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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916172
Clone id YMU001_000084_B07
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGGCTCTTCACTGTCTAGTTCCTCCACATACACTTTCCAATCTTCAGGCACCTCGTAAT
AAGCGTTTATAAAACCAGGGGCCATCCACAAGTCCTCCTCTTCATACATGTAGGGATGTG
AGGGGTCCGTAAATGGACCTTTAACTTGCCGCACCATTCCATCTGGCTTGTTTGCAAACA
TTCTGGCTTTTGCAGCTGCCACTTCTGCAAGACCAGCATGTAAAGCAGTGTAATCAATAG
TGCACTCATCAGGATCAGGTAGCAACTCTCCAAAGTAAAATTTACCCCAGATAGCACGGC
CATTTACTTCATACACTCCACAGCCATGGAAGCGACTATGCTTCCATTGCCCAGCGTATT
TGTAGTGCCCCTTTTCCGGGAGCTCACCAAACTCCTCAATCCACCCTTCTTTTTCTTCCC
AAGGCGTAAAAACTCTACCATGTTCCT
■■Homology search results ■■ -
sp_hit_id Q8UCC9
Definition sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Align length 54
Score (bit) 32.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916172|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_B07.
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC OS=Agrob...    32   1.2  
sp|P26703|V119_ASFL5 Protein LIS 119-1 OS=African swine fever vi...    31   2.7  
sp|P26710|V290_ASFL5 Protein LIS 290 OS=African swine fever viru...    30   4.6  
sp|Q08CH7|RS10B_DANRE Radial spoke head 10 homolog B OS=Danio re...    30   4.6  
sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c...    30   4.6  
sp|P26702|V117_ASFL5 Protein LIS 117 OS=African swine fever viru...    30   6.0  
sp|Q54DS4|Y2056_DICDI WD repeat-containing protein DDB_G0292056 ...    29   7.8  

>sp|Q8UCC9|THIC_AGRT5 Thiamine biosynthesis protein thiC
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=thiC PE=3 SV=2
          Length = 607

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
 Frame = -3

Query: 175 ANKPDGMVRQVKGPFTDPSHPYMYE------EEDLWMAPGFINAY---YEVPED 41
           A +P   V    GP+TDPSHP + E        D  +A G + AY   +  PED
Sbjct: 46  AGEPPVTVYDSSGPYTDPSHPVLIENGLPRLRHDWVVARGDVEAYEGRHVKPED 99


>sp|P26703|V119_ASFL5 Protein LIS 119-1 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS119-1 PE=3 SV=1
          Length = 119

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 239 Y*LHCFTCWSCRSGSCKSQ 183
           Y  HC  CW CR+G CK++
Sbjct: 48  YGKHCDFCWECRNGICKNK 66


>sp|P26710|V290_ASFL5 Protein LIS 290 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS290 PE=3 SV=1
          Length = 290

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 239 Y*LHCFTCWSCRSGSCKSQ 183
           Y  HC  CW+C+ G CK++
Sbjct: 208 YAKHCDFCWTCKDGMCKNK 226


>sp|Q08CH7|RS10B_DANRE Radial spoke head 10 homolog B OS=Danio rerio
           GN=rsph10b PE=2 SV=1
          Length = 731

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 358 YAGQWKHSRFHGCGVYEV-NGRAIWGKF 278
           Y GQWK+ + HG G Y   NGR   G+F
Sbjct: 307 YCGQWKYDKKHGQGRYIFENGRVYEGEF 334


>sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c
           PE=2 SV=2
          Length = 705

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 125 VRKWTFNLPHHSIWLVCK 178
           VR W    PHH +WL CK
Sbjct: 190 VRSWVTRSPHHVVWLNCK 207


>sp|P26702|V117_ASFL5 Protein LIS 117 OS=African swine fever virus
           (isolate Portugal/Lis 57/1957) GN=LIS117 PE=3 SV=1
          Length = 117

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 239 Y*LHCFTCWSCRSGSCKSQ 183
           Y  HC  CW C++G CK++
Sbjct: 48  YGKHCDFCWDCKNGICKNK 66


>sp|Q54DS4|Y2056_DICDI WD repeat-containing protein DDB_G0292056
            OS=Dictyostelium discoideum GN=DDB_G0292056 PE=4 SV=1
          Length = 1823

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 376  EKGH-YKYAGQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTID 233
            +KGH Y Y GQ +HS +H  G    N    +G      +  DP+ C +D
Sbjct: 1501 QKGHLYNYYGQQQHSHYHH-GYQHHNIHQTYGSHPNDVITYDPNLCLLD 1548
tr_hit_id A9TKY9
Definition tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 125
Score (bit) 196.0
E-value 5.0e-49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916172|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_B07.
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella paten...   196   5e-49
tr|Q8LPR8|Q8LPR8_ARATH AT5g22640/MDJ22_6 OS=Arabidopsis thaliana...   177   3e-43
tr|A7PQJ5|A7PQJ5_VITVI Chromosome chr6 scaffold_25, whole genome...   173   3e-42
tr|Q9FNJ7|Q9FNJ7_ARATH Arabidopsis thaliana genomic DNA, chromos...    99   8e-20
tr|Q00YE4|Q00YE4_OSTTA Phosphatidylinositol-4-phosphate 5-kinase...    51   2e-05
tr|A4S579|A4S579_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.004
tr|Q4D4Q3|Q4D4Q3_TRYCR Putative uncharacterized protein OS=Trypa...    36   0.82 
tr|Q4CU33|Q4CU33_TRYCR Putative uncharacterized protein OS=Trypa...    36   0.82 
tr|Q4DTU0|Q4DTU0_TRYCR Putative uncharacterized protein OS=Trypa...    36   1.1  
tr|Q4DGJ8|Q4DGJ8_TRYCR Putative uncharacterized protein OS=Trypa...    36   1.1  
tr|Q245C2|Q245C2_TETTH Putative uncharacterized protein OS=Tetra...    35   1.4  
tr|A0C0R8|A0C0R8_PARTE Chromosome undetermined scaffold_140, who...    35   1.8  
tr|B4LD91|B4LD91_DROVI GJ14095 OS=Drosophila virilis GN=GJ14095 ...    35   2.4  
tr|A0DV54|A0DV54_PARTE Chromosome undetermined scaffold_65, whol...    35   2.4  
tr|Q580Z8|Q580Z8_9TRYP Putative uncharacterized protein OS=Trypa...    34   3.1  
tr|Q4QHJ9|Q4QHJ9_LEIMA Putative uncharacterized protein OS=Leish...    34   3.1  
tr|B4KV36|B4KV36_DROMO GI13750 OS=Drosophila mojavensis GN=GI137...    34   3.1  
tr|A4HUC7|A4HUC7_LEIIN Putative uncharacterized protein OS=Leish...    34   3.1  
tr|A0D4G7|A0D4G7_PARTE Chromosome undetermined scaffold_37, whol...    34   3.1  
tr|Q8L7W4|Q8L7W4_ARATH AT4g17080/dl4570w OS=Arabidopsis thaliana...    34   4.1  
tr|O23552|O23552_ARATH Putative uncharacterized protein AT4g1708...    34   4.1  
tr|B8XY96|B8XY96_BRARP MORN OS=Brassica rapa subsp. pekinensis P...    34   4.1  
tr|Q586U2|Q586U2_9TRYP Putative uncharacterized protein OS=Trypa...    34   4.1  
tr|B3RI84|B3RI84_TRIAD Putative uncharacterized protein OS=Trich...    34   4.1  
tr|A0EF01|A0EF01_PARTE Chromosome undetermined scaffold_92, whol...    34   4.1  
tr|A0EEG6|A0EEG6_PARTE Chromosome undetermined scaffold_91, whol...    34   4.1  
tr|Q18BW3|Q18BW3_CLOD6 Putative uncharacterized protein OS=Clost...    33   5.3  
tr|Q0T4Z5|Q0T4Z5_SHIF8 Putative dioxygenase alpha subunit OS=Shi...    33   5.3  
tr|Q45QX6|Q45QX6_CHLRE Central apparatus associated protein C1a-...    33   5.3  
tr|A4HCH7|A4HCH7_LEIBR Putative uncharacterized protein OS=Leish...    33   5.3  

>tr|A9TKY9|A9TKY9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170651 PE=4 SV=1
          Length = 860

 Score =  196 bits (498), Expect = 5e-49
 Identities = 85/125 (68%), Positives = 98/125 (78%)
 Frame = -3

Query: 379 PEKGHYKYAGQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTXXXXXXXXX 200
           PEKGHYKYAGQWKHSR HGCGVYE+NGR  WGKFYFGE+LPD +EC    +         
Sbjct: 341 PEKGHYKYAGQWKHSRMHGCGVYELNGRQTWGKFYFGEMLPDEEECDDKLSAMHASLAEV 400

Query: 199 XXXXARMFANKPDGMVRQVKGPFTDPSHPYMYEEEDLWMAPGFINAYYEVPEDWKVYVEE 20
               ARMF NKPDGMVR++KGPF+DP HPYMYEEED+WMAPGFIN +Y VPE W+ YV+E
Sbjct: 401 AAAKARMFVNKPDGMVREMKGPFSDPQHPYMYEEEDMWMAPGFINQFYPVPEVWERYVKE 460

Query: 19  LDSEE 5
           +DSE+
Sbjct: 461 VDSEQ 465


>tr|Q8LPR8|Q8LPR8_ARATH AT5g22640/MDJ22_6 OS=Arabidopsis thaliana
           GN=At5g22640 PE=2 SV=1
          Length = 871

 Score =  177 bits (448), Expect = 3e-43
 Identities = 76/124 (61%), Positives = 91/124 (73%)
 Frame = -3

Query: 379 PEKGHYKYAGQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTXXXXXXXXX 200
           PEKG Y+YAGQWKHSR HGCGVYEVN R ++G+FYFGELL +   CT+D           
Sbjct: 330 PEKGRYRYAGQWKHSRMHGCGVYEVNERILYGRFYFGELLEEEHGCTVDICALHSGLAEV 389

Query: 199 XXXXARMFANKPDGMVRQVKGPFTDPSHPYMYEEEDLWMAPGFINAYYEVPEDWKVYVEE 20
               ARMF NKPDGM+R+ +GP+ DP HPY YEE+D+WMAPGFIN +YEVPE W+ YV E
Sbjct: 390 AAAKARMFVNKPDGMIREERGPYGDPQHPYFYEEDDVWMAPGFINQFYEVPEYWETYVGE 449

Query: 19  LDSE 8
           +D E
Sbjct: 450 VDQE 453


>tr|A7PQJ5|A7PQJ5_VITVI Chromosome chr6 scaffold_25, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022091001
           PE=4 SV=1
          Length = 845

 Score =  173 bits (439), Expect = 3e-42
 Identities = 77/124 (62%), Positives = 90/124 (72%)
 Frame = -3

Query: 379 PEKGHYKYAGQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTXXXXXXXXX 200
           PEKG Y+YAGQWKH R HGCGVYEVN R I+G+FYFGELL D   C  + +         
Sbjct: 319 PEKGRYRYAGQWKHGRMHGCGVYEVNERTIYGRFYFGELLEDFYGCDENTSALHSGIAEV 378

Query: 199 XXXXARMFANKPDGMVRQVKGPFTDPSHPYMYEEEDLWMAPGFINAYYEVPEDWKVYVEE 20
               ARMF NKPDGMVR+ +GP++DP HPY YEEED+WMAPGFIN +YEVP+ WK YV E
Sbjct: 379 AAAKARMFINKPDGMVREERGPYSDPQHPYFYEEEDVWMAPGFINQFYEVPDYWKTYVSE 438

Query: 19  LDSE 8
           +D E
Sbjct: 439 VDQE 442


>tr|Q9FNJ7|Q9FNJ7_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MDJ22 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 942

 Score = 99.4 bits (246), Expect = 8e-20
 Identities = 44/76 (57%), Positives = 51/76 (67%)
 Frame = -3

Query: 379 PEKGHYKYAGQWKHSRFHGCGVYEVNGRAIWGKFYFGELLPDPDECTIDYTXXXXXXXXX 200
           PEKG Y+YAGQWKHSR HGCGVYEVN R ++G+FYFGELL +   CT+D           
Sbjct: 330 PEKGRYRYAGQWKHSRMHGCGVYEVNERILYGRFYFGELLEEEHGCTVDICALHSGLAEV 389

Query: 199 XXXXARMFANKPDGMV 152
               ARMF NKPDG +
Sbjct: 390 AAAKARMFVNKPDGSI 405



 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 31/50 (62%), Positives = 41/50 (82%)
 Frame = -3

Query: 157 MVRQVKGPFTDPSHPYMYEEEDLWMAPGFINAYYEVPEDWKVYVEELDSE 8
           ++R+ +GP+ DP HPY YEE+D+WMAPGFIN +YEVPE W+ YV E+D E
Sbjct: 475 LIREERGPYGDPQHPYFYEEDDVWMAPGFINQFYEVPEYWETYVGEVDQE 524


>tr|Q00YE4|Q00YE4_OSTTA Phosphatidylinositol-4-phosphate 5-kinase
           (ISS) OS=Ostreococcus tauri GN=Ot12g00080 PE=4 SV=1
          Length = 724

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
 Frame = -3

Query: 358 YAGQWKHSRFHGCGVYEVNGRAI----W-GKFYFGELLPDPDECTIDYTXXXXXXXXXXX 194
           Y G+WK++  +GCGV      A+    W    Y GE       C  D             
Sbjct: 494 YFGEWKNNSQNGCGVKLYGSGAVEVGEWKDDQYLGEYT---GRCGEDEQDTAMFNAMKAA 550

Query: 193 XXARMFANKPDGMVRQVKGPFTDP----SHPYMYEEEDLWMAPGFINAYYEVPEDW 38
             ARMF NKPDG V  +K          +HP +YE    WM PG+    YE P D+
Sbjct: 551 NRARMFTNKPDGEVTILKNIARPEESVNNHPVVYEGGTEWMMPGYKGEQYEPPADF 606


>tr|A4S579|A4S579_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_26666 PE=4 SV=1
          Length = 325

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
 Frame = -3

Query: 358 YAGQWKHSRFHGCGVYEVNGRAI----W-GKFYFGELLPDPDECTIDYTXXXXXXXXXXX 194
           Y G W+++  +GCGV      A+    W    Y GE       C  D             
Sbjct: 74  YYGHWQNNSQNGCGVKLYGSGAVEVGEWKDDQYLGEYT---GRCGEDEQNRAMMHAMEVA 130

Query: 193 XXARMFANKPDGMV---RQVKGPFTDPSH-PYMYEEEDLWMAPGFINAYYEVPED 41
             AR+F  KPDG V     +  P T  SH P +Y+    W  PG+    +E P D
Sbjct: 131 TRARLFTGKPDGEVVVLENISNPDTAESHHPVVYDRGTEWQMPGYKGEQFEPPAD 185


>tr|Q4D4Q3|Q4D4Q3_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506229.20 PE=4 SV=1
          Length = 171

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 358 YAGQWKHSRFHGCGVY-EVNGRAIWGKFYFG 269
           Y G W+ +R HG G Y +VNG+   GKFY G
Sbjct: 106 YEGAWRANRMHGLGTYTDVNGKVWNGKFYNG 136


>tr|Q4CU33|Q4CU33_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511573.30 PE=4 SV=1
          Length = 171

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 358 YAGQWKHSRFHGCGVY-EVNGRAIWGKFYFG 269
           Y G W+ +R HG G Y +VNG+   GKFY G
Sbjct: 106 YEGAWRANRMHGLGTYTDVNGKVWNGKFYNG 136


>tr|Q4DTU0|Q4DTU0_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053504741.50 PE=4 SV=1
          Length = 175

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 361 KYAGQWKHSRFHGCGVY-EVNGRAIWGKFYFG 269
           +Y GQW+++R HG GVY +  G    GKFY G
Sbjct: 133 RYEGQWENNRMHGFGVYVDAQGGRWAGKFYRG 164


>tr|Q4DGJ8|Q4DGJ8_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511625.20 PE=4 SV=1
          Length = 175

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 361 KYAGQWKHSRFHGCGVY-EVNGRAIWGKFYFG 269
           +Y GQW+++R HG GVY +  G    GKFY G
Sbjct: 133 RYEGQWENNRMHGFGVYVDAQGGRWAGKFYRG 164