NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916183
Clone id YMU001_000084_C07
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACATGCTGTAGTCTTATTAAGAAGTCTAGGCTGATTGGCTGGACAGAAATTTCATGGAAA
TCGATCCTTAGCTCGTCAACTTTGTCGCTTGATGGATGGGTGCCCTTAATAATGAAATCG
AATTTGGGACTAGATCAAAAGCCAACATCTTTGAGAGTGTCTGTCTCCATCACGCCCCCT
ACAGCTGTGCCTTTTTTACTTCGGATGGAGTACCCGCTCCTCAGAAATGGAAAGAGAGAT
TACCTATCAAAGACTGTCTATAACCATCAAAATAAAAAGGCTTTCATGGTAAAAATCAAT
GGTCTAGGTGCAAAGGAGACATCAGTGATTCAAGTTTACAGAATTGGTTGCAAAGAGTCT
CCAGAGATTTTGTTGGGATCGGCAGCACGTATCGGGCCTGCTAGCACGGCTTGGAGTTTG
CTGGATGGTGACATGCATCTTATCATTAATTCCACAGTACAAGGTTGCCAACTTAATATT
ATACCAACCACTCCTTCAGAGAATTCTGT
■■Homology search results ■■ -
sp_hit_id Q49YE4
Definition sp|Q49YE4|TPX_STAS1 Probable thiol peroxidase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
Align length 52
Score (bit) 31.2
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916183|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_C07.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q49YE4|TPX_STAS1 Probable thiol peroxidase OS=Staphylococcus ...    31   2.8  
sp|A6VML2|HTPG_ACTSZ Chaperone protein htpG OS=Actinobacillus su...    31   3.5  
sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransf...    30   6.0  
sp|Q4TU93|MRC2_RAT C-type mannose receptor 2 OS=Rattus norvegicu...    30   6.1  
sp|Q90375|GHR_COLLI Growth hormone receptor OS=Columba livia GN=...    30   6.1  
sp|Q02092|GHR_CHICK Growth hormone receptor OS=Gallus gallus GN=...    30   6.1  
sp|Q68DN6|RGPD1_HUMAN RANBP2-like and GRIP domain-containing pro...    30   7.9  

>sp|Q49YE4|TPX_STAS1 Probable thiol peroxidase OS=Staphylococcus
           saprophyticus subsp. saprophyticus (strain ATCC 15305 /
           DSM 20229) GN=tpx PE=3 SV=1
          Length = 164

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 340 RIGCKESPEILLGSAARIGPASTAWSLLDGDMHLIINSTVQGCQLNIIPTTP 495
           +I  K+ P  LLGS  + G  +  ++LLD D++ +  ST  G Q  +I   P
Sbjct: 3   QITFKQEPITLLGSQVKTGETAPEFTLLDNDLNEVNLSTYDG-QKKLISVVP 53


>sp|A6VML2|HTPG_ACTSZ Chaperone protein htpG OS=Actinobacillus
           succinogenes (strain ATCC 55618 / 130Z) GN=htpG PE=3
           SV=1
          Length = 628

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 300 WSRCKGDISDSSLQNWLQRVSRDF 371
           W+R KG+ISD   Q + + +S DF
Sbjct: 237 WTRAKGEISDEEYQEFYKHISHDF 260


>sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide
           N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2
          Length = 663

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 374 WDRQHVSGLLARLGVCWMVTCILSLI 451
           WD+  + G+L RLGV + V  +L L+
Sbjct: 368 WDKVRIPGVLQRLGVTYFVVAVLELL 393


>sp|Q4TU93|MRC2_RAT C-type mannose receptor 2 OS=Rattus norvegicus
           GN=Mrc2 PE=1 SV=1
          Length = 1480

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
 Frame = +1

Query: 367 ILLGSAARIG-PASTAWSLLDGDMHLIINSTVQGC------QLNIIP 486
           +LL    R+G PA +A +LL+ D+ LI +  +QGC      Q+ +IP
Sbjct: 19  VLLLGGLRLGHPADSAAALLEPDVFLIFSQGMQGCLEAQGVQVRVIP 65


>sp|Q90375|GHR_COLLI Growth hormone receptor OS=Columba livia GN=GHR
           PE=2 SV=1
          Length = 611

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 154 RVSVSITPPTAVPFLLRMEYPLLRNGKRDYLSKTVYNHQNKK 279
           R+ + I PP  VP +  ++  LL+ GK D ++  + +H N K
Sbjct: 268 RLKMLIFPPVPVPKIKGIDPDLLKKGKLDEVNSILASHDNYK 309


>sp|Q02092|GHR_CHICK Growth hormone receptor OS=Gallus gallus GN=GHR
           PE=1 SV=1
          Length = 608

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 154 RVSVSITPPTAVPFLLRMEYPLLRNGKRDYLSKTVYNHQNKK 279
           R+ + I PP  VP +  ++  LL+ GK D ++  + +H N K
Sbjct: 265 RLKMLIFPPVPVPKIKGIDPDLLKKGKLDEVNSILASHDNYK 306


>sp|Q68DN6|RGPD1_HUMAN RANBP2-like and GRIP domain-containing
           protein 1 OS=Homo sapiens GN=RGPD1 PE=1 SV=1
          Length = 1748

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 309 CKGDISDSSLQNWLQRVSRDFVGIGSTYRAC*HGLEFAG 425
           CK D++D   + W++R ++ F G  + Y+   H L+  G
Sbjct: 96  CKNDVTDGRAKYWVERAAKLFPGSPAIYKLKEHLLDCEG 134
tr_hit_id B8LME0
Definition tr|B8LME0|B8LME0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 89
Score (bit) 40.0
E-value 0.061
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916183|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_C07.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LME0|B8LME0_PICSI Putative uncharacterized protein OS=Picea...    40   0.061
tr|A9RTE2|A9RTE2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.10 
tr|A9U387|A9U387_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.52 
tr|A7PRZ1|A7PRZ1_VITVI Chromosome chr14 scaffold_27, whole genom...    37   0.52 
tr|A9P1C9|A9P1C9_PICSI Putative uncharacterized protein OS=Picea...    36   0.88 
tr|Q9ZQ47|Q9ZQ47_ARATH Putative uncharacterized protein At2g2266...    35   1.5  
tr|Q2V469|Q2V469_ARATH Uncharacterized protein At2g22660.1 OS=Ar...    35   1.5  
tr|B4S175|B4S175_ALTMD Signaling protein with a acyltransferase ...    35   2.0  
tr|Q677B7|Q677B7_HYAOR Glycine-rich protein (Fragment) OS=Hyacin...    33   5.7  
tr|A9T666|A9T666_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.7  
tr|Q73KL7|Q73KL7_TREDE Methionine gamma-lyase OS=Treponema denti...    33   7.5  
tr|A3X9N2|A3X9N2_9RHOB Methionine gamma-lyase OS=Roseobacter sp....    33   9.8  

>tr|B8LME0|B8LME0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 815

 Score = 40.0 bits (92), Expect = 0.061
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
 Frame = +1

Query: 91  DGWVPLIMKSNLGLDQKPTSLRVSVSITPPTAVPFLL----------RMEY-PLLRNGKR 237
           + W PL      G   KP SL ++VS+TPPT  P+LL          + ++   +R  KR
Sbjct: 427 ENWFPLSRNGQPG-GFKPISLHIAVSVTPPTIAPYLLWSVRSHCFERKFQFLECIRRIKR 485

Query: 238 DYLSKTVYNHQNKKAFMVKINGLGAKETS 324
             +     +H +K+ F+VK        TS
Sbjct: 486 AEMVMRFVDHDDKEVFIVKTRTTAKPYTS 514


>tr|A9RTE2|A9RTE2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160875 PE=4 SV=1
          Length = 771

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 25/145 (17%)
 Frame = +1

Query: 127 GLDQKPTSLRVSVSITPPTAVPFLLR----MEYPLLRNGKRDYLSKTVYNHQNKKAFMVK 294
           G    P SL VS SITPP A P+LLR     +  +L+ G   Y  + V++H + +  M+ 
Sbjct: 449 GKSSPPPSLHVSASITPPVAAPYLLRTLEVSQDRVLKEGS-FYSFRNVFDHADNERLMLH 507

Query: 295 IN-------GLGAKETSVIQVYRIGCKES--------PEILLGSAARIGPASTA------ 411
           I         +G      ++V +   K+S           LLG A  +  + +       
Sbjct: 508 IQYDSEGSFKVGPSSIQEVRVLQGAQKKSRFTKRKMNSGTLLGRAQPLVKSDSGKSNARH 567

Query: 412 WSLLDGDMHLIINSTVQGCQLNIIP 486
           W L D  + L I       Q ++ P
Sbjct: 568 WQLFDNSIQLTIRKRADDNQWHLRP 592


>tr|A9U387|A9U387_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_173440 PE=4 SV=1
          Length = 928

 Score = 37.0 bits (84), Expect = 0.52
 Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 43/190 (22%)
 Frame = +1

Query: 4    CCSLIKKSRLIGWTEIXXXXXXXXXXXXXDGWVPLIMKS-NLGLDQKPTSLRVSVSITPP 180
            C    +K++ IG  ++             D   PL  K  N    ++   + + VSITPP
Sbjct: 508  CMRTFRKTKCIGRAKLTWHELQKAPMLYHDVMFPLSAKRFNSPESKQSCQVGLEVSITPP 567

Query: 181  TAVPFLLR-------------MEYPLLRNGKRD-----YLSKTVYNHQNKKAFMVKINGL 306
                +LL+             +   +LR    +     ++S+TV NH  K+ F+++I   
Sbjct: 568  VQAAYLLKSVPDRVTDDSGAMLSSVILRRRHNEPQSGRWISRTVLNHAGKETFVIRIRAA 627

Query: 307  GAKETS-------------VIQVYRIGCK-------ESPEILLGSAA----RIGPASTAW 414
                TS             VI V+  G          SPE ++GSA      +     +W
Sbjct: 628  KGAWTSRGDRPVGVDWNERVINVHGGGWNYVSNHVGTSPEKIVGSAVPLAHELEEYKLSW 687

Query: 415  SLLDGDMHLI 444
            +L  GD  ++
Sbjct: 688  ALSTGDTLIV 697


>tr|A7PRZ1|A7PRZ1_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022690001
           PE=4 SV=1
          Length = 771

 Score = 37.0 bits (84), Expect = 0.52
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 47/175 (26%)
 Frame = +1

Query: 97  WVPLIMKSNLGLDQK-PTSLRVSVSITPPTAVPFL--------------------LRMEY 213
           W  L+   +L L+ K    +RV VSITPP   P+L                    LRM  
Sbjct: 409 WNDLLRSPSLTLESKVDEQVRVVVSITPPAQAPYLFKCVPDRVTDDSGAMISDVVLRMNS 468

Query: 214 PLLRNGKRDYLSKTVYNHQNKKAFMVKINGLGA-------------KETSVIQV------ 336
              + G+  +LS+TV +H  ++ F+V++   G              +E  +I++      
Sbjct: 469 YRPQEGR--WLSRTVLDHAGRECFVVRMRVAGGFWRRGGETPSAVKREDRIIEIREGSWS 526

Query: 337 YRIG-CKESPEILLGSAARIGP---ASTAWSLLDGD---MHLIINSTVQGCQLNI 480
           Y  G     PE ++G+A    P     +AW    GD   +H  ++S+  G   ++
Sbjct: 527 YLAGTIGRLPEKVVGTATPKEPPDHQKSAWCFSTGDELTIHWDLSSSTAGLNFSL 581


>tr|A9P1C9|A9P1C9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 235

 Score = 36.2 bits (82), Expect = 0.88
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
 Frame = +1

Query: 10  SLIKKSRLIGWTEIXXXXXXXXXXXXXDGWVPL--IMKSNLGLDQKPTSLRVSVSITP-- 177
           S+ + S+L+GW EI             + W PL  I  S  G  Q+P SL V++ + P  
Sbjct: 110 SMFRASKLVGWIEIPWKKLLASPTLSINNWFPLIPINTSVSGGSQRPPSLHVAICLKPLN 169

Query: 178 ------PTAVPFLLRMEY--PLLRNGKRDYLS 249
                  TA  +   ME   P +   +R+Y++
Sbjct: 170 LVDSVSQTAKQYEAEMEIYDPEVNENRRNYVN 201


>tr|Q9ZQ47|Q9ZQ47_ARATH Putative uncharacterized protein At2g22660
           OS=Arabidopsis thaliana GN=At2g22660 PE=2 SV=1
          Length = 819

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +1

Query: 97  WVPLIMKSNLGLDQKPTSLRVSVSITPPTAVPFLLRM 207
           W+ L        D KP SLRV+VS TPP   P +L M
Sbjct: 436 WLELTPSKGSQTDTKPISLRVAVSFTPPVRSPSVLHM 472


>tr|Q2V469|Q2V469_ARATH Uncharacterized protein At2g22660.1
           OS=Arabidopsis thaliana GN=At2g22660 PE=4 SV=1
          Length = 586

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +1

Query: 97  WVPLIMKSNLGLDQKPTSLRVSVSITPPTAVPFLLRM 207
           W+ L        D KP SLRV+VS TPP   P +L M
Sbjct: 436 WLELTPSKGSQTDTKPISLRVAVSFTPPVRSPSVLHM 472


>tr|B4S175|B4S175_ALTMD Signaling protein with a acyltransferase and
           GGDEF domains OS=Alteromonas macleodii (strain DSM 17117
           / Deep ecotype) GN=MADE_00565 PE=4 SV=1
          Length = 628

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +1

Query: 97  WVPLIMKSNLGLDQKPTSLRVSVSITPPTAVPFLLRMEYPLLRNGKRDYLSKTVYNHQNK 276
           W P+    NLG+D       + VS T  +   FLL ++YPLL     D+L   VY+    
Sbjct: 66  WRPVASPVNLGMDSNVHWFSMVVSPTQTSESRFLLHIDYPLL-----DHLDVAVYSQIGS 120

Query: 277 KAFMVKING 303
           K  +    G
Sbjct: 121 KPIVTFTGG 129


>tr|Q677B7|Q677B7_HYAOR Glycine-rich protein (Fragment)
           OS=Hyacinthus orientalis PE=2 SV=1
          Length = 160

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 130 LDQKPTSLRVSVSITPPTAVPFLLRM--EYPLLRNGKRDYLSKTVYNHQNKKAFMVKING 303
           LD KP SLRV+ S T P   P +LRM   +P+  N     LS  V  H  +    V +NG
Sbjct: 21  LDSKPISLRVAASFTVPVPAPQVLRMFKSHPISLNACFFPLSGKV-QHIRRWTRFVDVNG 79


>tr|A9T666|A9T666_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_88601 PE=4 SV=1
          Length = 882

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 18/72 (25%)
 Frame = +1

Query: 136 QKPTSLRVSVSITPPTAVPFLLR-------------MEYPLLRNGKRD-----YLSKTVY 261
           ++P  LR+ VSITPP    + L+             +   +LR  + +     ++S+TV 
Sbjct: 502 RQPLQLRLDVSITPPVQAAYFLKSLPDRVTDDQGAMLSGTILRKRRWEPQAGRWISRTVV 561

Query: 262 NHQNKKAFMVKI 297
           NH  K+ F+++I
Sbjct: 562 NHAGKENFVIRI 573