BP916190
Clone id YMU001_000084_D02
Library
Length 350
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAATACTCACCCAAACTGAGTGAGTTGTGATAAATTGAAGACATAAAGTTATACATCAAA
TCCATGCTCAAACAGAGCCATGGAAGCAAAAATAATTAAATCGGTTCCATAAGGCCACTG
CATATCCGAGCACATTGAAGCCAACAAGAACTACCAAAACACATCATGAGGCTGCCACTG
AAAACCCAAGGACTGCTACTCCCATGAGAAATCATCTTCAAATGAGACATGAGACCACAC
ACTAGTACACTGGCTGAACAAGGGGCCGCCCTTTTGAACATTAAAAAAAAAAGGAAGAAT
GGCCAAGCTACCCTATCACCACCTGAGACCACCTGGAGTGCCACCATGAG
■■Homology search results ■■ -
sp_hit_id Q04EH1
Definition sp|Q04EH1|RL20_OENOB 50S ribosomal protein L20 OS=Oenococcus oeni (strain BAA-331 / PSU-1)
Align length 35
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916190|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D02.
(350 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q04EH1|RL20_OENOB 50S ribosomal protein L20 OS=Oenococcus oen... 32 1.3
sp|Q7N3Z4|NHAB_PHOLL Na(+)/H(+) antiporter nhaB OS=Photorhabdus ... 32 1.3
sp|Q3UXZ9|JAD1A_MOUSE Histone demethylase JARID1A OS=Mus musculu... 31 1.7
sp|P29375|JAD1A_HUMAN Histone demethylase JARID1A OS=Homo sapien... 31 1.7
sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1... 31 2.2
sp|Q4P0G6|CWC21_USTMA Pre-mRNA-splicing factor CWC21 OS=Ustilago... 30 2.8
sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis... 29 6.3
sp|Q87KQ7|NUDC_VIBPA NADH pyrophosphatase OS=Vibrio parahaemolyt... 29 8.2
sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Ze... 29 8.2

>sp|Q04EH1|RL20_OENOB 50S ribosomal protein L20 OS=Oenococcus oeni
(strain BAA-331 / PSU-1) GN=rplT PE=3 SV=1
Length = 196

Score = 31.6 bits (70), Expect = 1.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3

Query: 96 LNRFHKATAYPSTLKPTRTTKTHHEAATENPRTAT 200
+ R K A P L+P ++TKT A E P TA+
Sbjct: 132 IERIEKGAAKPVVLEPGKSTKTQEVAVAEKPTTAS 166


>sp|Q7N3Z4|NHAB_PHOLL Na(+)/H(+) antiporter nhaB OS=Photorhabdus
luminescens subsp. laumondii GN=nhaB PE=3 SV=1
Length = 515

Score = 31.6 bits (70), Expect = 1.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -1

Query: 311 VAWPFFLFFLMFKRAAPCSASVLVCGLM-----SHLKMISHGSSSP 189
V W F FF+ R AP + V +CGL+ H K+ +G+ P
Sbjct: 233 VNWDFVTFFI---RMAPITLPVFICGLLVCFLVEHFKLFGYGTELP 275


>sp|Q3UXZ9|JAD1A_MOUSE Histone demethylase JARID1A OS=Mus musculus
GN=Jarid1a PE=2 SV=2
Length = 1690

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1

Query: 248 VLVCGLMSHLKMISHGSSSPWVFSGSLMMCFGSSCW 141
VL +++H+ + G PW++ G MCF S CW
Sbjct: 450 VLEQSVLAHINVDISGMKVPWLYVG---MCFSSFCW 482


>sp|P29375|JAD1A_HUMAN Histone demethylase JARID1A OS=Homo sapiens
GN=JARID1A PE=1 SV=3
Length = 1690

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1

Query: 248 VLVCGLMSHLKMISHGSSSPWVFSGSLMMCFGSSCW 141
VL +++H+ + G PW++ G MCF S CW
Sbjct: 450 VLEQSVLAHINVDISGMKVPWLYVG---MCFSSFCW 482


>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1
OS=Schizosaccharomyces pombe GN=rpb1 PE=1 SV=1
Length = 1752

Score = 30.8 bits (68), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1

Query: 95 LFLLPWLCLSMDLMYNFMSSIYHNSLS 15
++L+PW+ +MDL N + I H +LS
Sbjct: 1121 IYLMPWIAANMDLAKNVQTQIEHTTLS 1147


>sp|Q4P0G6|CWC21_USTMA Pre-mRNA-splicing factor CWC21 OS=Ustilago
maydis GN=CWC21 PE=3 SV=1
Length = 348

Score = 30.4 bits (67), Expect = 2.8
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3

Query: 45 KVIHQIHAQTEPWKQK*LNRFHKATAYPSTLKPTRTTKTHHEAATENPRTATPMR 209
K +IH Q + ++Q+ L R A+ P P R + TH ++ + + ++ P +
Sbjct: 164 KKSERIHQQRQAYQQRQLARASHASTQPPPHPPARCSSTHSQSTSSSSPSSPPRK 218


>sp|Q23541|JAD1_CAEEL Histone demethylase rbr-2 OS=Caenorhabditis
elegans GN=rbr-2 PE=1 SV=2
Length = 1477

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1

Query: 248 VLVCGLMSHLKMISHGSSSPWVFSGSLMMCFGSSCW 141
VL ++SH G PWV+ G MCF + CW
Sbjct: 481 VLRESVLSHFNTGISGMMVPWVYVG---MCFSTFCW 513


>sp|Q87KQ7|NUDC_VIBPA NADH pyrophosphatase OS=Vibrio
parahaemolyticus GN=nudC PE=3 SV=1
Length = 260

Score = 28.9 bits (63), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1

Query: 224 HLKMISHGSSSPWVFSGSLMMCF 156
H+K I + S PW F S+MM F
Sbjct: 187 HVKNIRYFGSQPWAFPSSMMMAF 209


>sp|Q8S4P4|EZ3_MAIZE Histone-lysine N-methyltransferase EZ3 OS=Zea
mays GN=EZ3 PE=2 SV=1
Length = 895

Score = 28.9 bits (63), Expect = 8.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2

Query: 59 NPCSNRAMEAKIIKSVP*GHCISEHIEANKNYQNTS*GCH*KPKDCYSHE 208
NPC + M K V G C ++ +K+ +N GCH C S +
Sbjct: 648 NPCVCQQMCGKDCPCVENGTCCEKYCGCSKSCKNKFRGCHCAKSQCRSRQ 697


tr_hit_id B4M2W2
Definition tr|B4M2W2|B4M2W2_DROVI GJ17128 OS=Drosophila virilis
Align length 29
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916190|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D02.
(350 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4M2W2|B4M2W2_DROVI GJ17128 OS=Drosophila virilis GN=GJ17128 ... 33 5.4
tr|Q8A657|Q8A657_BACTN Putative uncharacterized protein OS=Bacte... 33 7.0
tr|Q6CS65|Q6CS65_KLULA Chitin synthase OS=Kluyveromyces lactis G... 33 9.2

>tr|B4M2W2|B4M2W2_DROVI GJ17128 OS=Drosophila virilis GN=GJ17128
PE=4 SV=1
Length = 919

Score = 33.5 bits (75), Expect = 5.4
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3

Query: 117 TAYPSTLKPTRTTKTHHEAATENPRTATP 203
T PST KPT+T +T + +TENP T P
Sbjct: 870 TIQPSTPKPTQTNRTTKKPSTENPTTFKP 898


>tr|Q8A657|Q8A657_BACTN Putative uncharacterized protein
OS=Bacteroides thetaiotaomicron GN=BT_2029 PE=4 SV=1
Length = 172

Score = 33.1 bits (74), Expect = 7.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1

Query: 215 MISHGSSSPWVFSGSLMMCFGSSCW 141
M+S G+SS W S + +C GSSCW
Sbjct: 29 MLSFGASSCWFLSYWVPLCLGSSCW 53


>tr|Q6CS65|Q6CS65_KLULA Chitin synthase OS=Kluyveromyces lactis
GN=KLLA0D03542g PE=3 SV=1
Length = 918

Score = 32.7 bits (73), Expect = 9.2
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Frame = -1

Query: 347 MVALQVVSGGDRVAWPFFLFFLMFKRAAPCSASVLVCGLMSHLKMISHGSSSPWVFSG-- 174
+ AL ++S G+R LF CS LVCGL+ +K + G+ VF
Sbjct: 645 LCALFIISMGNRPQGANHLFISSMVMLTICSTYALVCGLVFAIKTLDDGTEEHSVFVNIV 704

Query: 173 -SLMMCFGSSCWLQCARICSGLMEPI*LFLLPWLCLSMDLMYNFM 42
SL+ +G + L+L PW + + Y M
Sbjct: 705 VSLLSTYGLYAFTSL------------LYLDPWHIFTSSVQYLLM 737