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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916193
Clone id YMU001_000084_D05
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTTAAAAGTGATGATGCAGTGGATGATGAGACTGAAGCCTCAGGTAAGAGAAGCCGACAA
GGGGCGAAGCCAAAGAAGGATGCTATGGTCTCTGGGGCTGGCCGAGCGTAGAGGAAAGCT
CCAAGGATTTGATTGTTCCAACTCTTGTATCTTCTAGAAGCGGTAAATGTGGATGCTGGA
TTCTTCAAGGTGATGTTGGTGATGATGGAGAGCTTGGGCAGTAGTGTAAATGCTGGCCTA
GAAGAAATGCCCAGAATGATACATGTCTTGCATAAGAGGGAAGTGGTGGCTCCATTTGGC
CACCAGTGTAAGGTATTTGATGTATTCCTTATGTTGTTTTCATATATCCAAGATGGAGGA
GACTTGTGTATACTCATTATGCCCTCAAATCTTTAGGGGGAGGGGCTGTTAATGTCCTTT
TGTAAGATGTAC
■■Homology search results ■■ -
sp_hit_id Q54ML4
Definition sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog OS=Dictyostelium discoideum
Align length 60
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916193|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D05.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog O...    32   0.99 
sp|P46947|CWC26_YEAST Pre-mRNA-splicing factor CWC26 OS=Saccharo...    31   2.2  
sp|Q12884|SEPR_HUMAN Seprase OS=Homo sapiens GN=FAP PE=1 SV=4          30   3.8  
sp|Q42396|CDPKC_ARATH Calcium-dependent protein kinase 12 OS=Ara...    30   4.9  
sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g...    29   6.4  
sp|Q5UR32|YR556_MIMIV Uncharacterized protein R556 OS=Acanthamoe...    29   8.4  
sp|Q2J2E9|UGPC_RHOP2 sn-glycerol-3-phosphate import ATP-binding ...    29   8.4  
sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondr...    29   8.4  
sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1 OS=Arab...    27   9.0  

>sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog
            OS=Dictyostelium discoideum GN=heatr1 PE=3 SV=1
          Length = 2237

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +2

Query: 8    DDETEASGKRSRQGAKPKKDAMVSGAGRA*RKAPRI*LFQLLYLLEAVNVDAGFFKVMLV 187
            DDE   S        KPKK  +V+G  ++ +  P I    LL+  + VN  A   K + V
Sbjct: 1929 DDEENGSDDEESDEDKPKKKKLVNGKSKSTKTQPEISKDNLLFFYKIVNSLASNLKTIFV 1988


>sp|P46947|CWC26_YEAST Pre-mRNA-splicing factor CWC26
           OS=Saccharomyces cerevisiae GN=BUD13 PE=1 SV=1
          Length = 266

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -2

Query: 186 TNITLKNPASTFTASRRYKSWNNQILGAFLYARPAPE 76
           +++T+++PA TFT  +  ++    +LG  LY +PAPE
Sbjct: 186 SSLTIEDPAITFTHDKE-RTVKTSLLGRKLYDKPAPE 221


>sp|Q12884|SEPR_HUMAN Seprase OS=Homo sapiens GN=FAP PE=1 SV=4
          Length = 760

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 417 YILQKDINSPSP*RFEGIMS-IHKSPPSWIYENNIRNTSNTLHWWPNG 277
           Y+ Q+  + P    F G  + I    P W+YE  +  T   L W PNG
Sbjct: 171 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLPTKYALWWSPNG 218


>sp|Q42396|CDPKC_ARATH Calcium-dependent protein kinase 12
           OS=Arabidopsis thaliana GN=CPK12 PE=1 SV=1
          Length = 490

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = +1

Query: 85  WPSVEESSKDLIVPTLVSSRSGK-------CGCWILQGDVGDDGEL 201
           WPS+ ES+KDLI   L S+   +       C  WI+   V  D  L
Sbjct: 246 WPSISESAKDLIKKMLESNPKKRLTAHQVLCHPWIVDDKVAPDKPL 291


>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles
           gambiae GN=nkd PE=2 SV=1
          Length = 886

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 276 ATTSLLCKTCIILGISSRPAFTLLPKLSIITNITLKNPASTFTASRRYK 130
           +T +L+C  C+  G    P  TLLP LS +  + +  P++  T   + K
Sbjct: 457 STAALICHDCVDGGA---PTTTLLPPLSTLETVVIPAPSAGVTGRAKRK 502


>sp|Q5UR32|YR556_MIMIV Uncharacterized protein R556 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R556 PE=4 SV=1
          Length = 293

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 345 PPSWIYENNIRNTSNTLHWWPNGATTSLLCKTCII 241
           P +W YE    N +N LH+  +     L C  CII
Sbjct: 110 PNNWYYEKT--NNTNVLHYIESHMINQLFCTICII 142


>sp|Q2J2E9|UGPC_RHOP2 sn-glycerol-3-phosphate import ATP-binding
           protein ugpC OS=Rhodopseudomonas palustris (strain HaA2)
           GN=ugpC PE=3 SV=1
          Length = 364

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 99  LYARPAPETIASFFGFAPCRLLLPEA 22
           +YARPA   +ASF G  P  L+L +A
Sbjct: 222 VYARPATTFVASFIGAPPMNLMLLDA 247


>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial
           OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1
          Length = 582

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 73  GLWGWPSVEESSKDLIVPTLVSSRSGKCGCWILQGDVGDDGELG 204
           G  G+P ++ + K+L+    +S+R  +  C  L  D+G D  +G
Sbjct: 431 GRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMG 474


>sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1
           OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1
          Length = 610

 Score = 26.6 bits (57), Expect(2) = 9.0
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = +1

Query: 85  WPSVEESSKDLIVPTLV-------SSRSGKCGCWILQGDVGDDGEL 201
           WPS+ ES+KDL+   LV       ++    C  W+    V  D  L
Sbjct: 374 WPSISESAKDLVRKMLVRDPKKRLTAHQVLCHPWVQVDGVAPDKPL 419



 Score = 20.8 bits (42), Expect(2) = 9.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 185 VMMESLGSSVNAGLEEMPRMI 247
           V+ ESL     AGL+EM  MI
Sbjct: 443 VIAESLSEEEIAGLKEMFNMI 463
tr_hit_id Q2YCH0
Definition tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)
Align length 47
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916193|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D05.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis OS=Nitros...    35   2.4  

>tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis
           OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
           11849) GN=Nmul_A0243 PE=4 SV=1
          Length = 463

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = -2

Query: 237 GISSRPAFTLLPKLSIITNITLKNPASTFTASRRYKSWNNQILGAFL 97
           GIS R A T L  LS+ TNIT  NPAS  +     K   N ++  FL
Sbjct: 359 GISQRSALTRLESLSVQTNITPLNPASVPSEPSSPKLLLNTLISIFL 405