BP916196
Clone id YMU001_000084_D09
Library
Length 311
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GCTACATCATCTTGTCACGACGGCATGTAGCATATCCTCTGTAACATGACCGCAATTTGT
GAGGTCAAGTTTAAGAGTATGTTGAAAAGCCTCATCAACCACTGACATGTGCACCGGAGG
TAGCTCTATCCTTAGTTCATGCAAACCCCCTACTAATCTGGTTAGCGGGTGGTTTTCCTT
TGGGCATGTAATCTGTACTGTAGCCTCCCCATTTTTCATGTGAATGTTAACATGTTGCAT
CGTACCAGCAGATGGAGAGTTGGCCCCCTCTTTGGTCTGCGAAATGGCCGACACTTCGCC
CCCATCTGCAT
■■Homology search results ■■ -
sp_hit_id Q9LNJ5
Definition sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana
Align length 85
Score (bit) 40.0
E-value 0.004
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916196|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D09.
(311 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis... 40 0.004
sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis ... 37 0.023
sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis t... 36 0.052
sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE... 36 0.068
sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis th... 35 0.15
sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis th... 33 0.44
sp|O15439|MRP4_HUMAN Multidrug resistance-associated protein 4 O... 30 3.7
sp|Q8K4E0|ALMS1_MOUSE Alstrom syndrome protein 1 homolog OS=Mus ... 30 3.7
sp|Q30S57|PDXJ_SULDN Pyridoxine 5'-phosphate synthase OS=Sulfuri... 30 4.9
sp|P38079|YRO2_YEAST Protein YRO2 OS=Saccharomyces cerevisiae GN... 29 6.4
sp|Q12117|MRH1_YEAST Protein MRH1 OS=Saccharomyces cerevisiae GN... 29 6.4
sp|P21333|FLNA_HUMAN Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4 29 6.4
sp|Q8PAD0|3HAO_XANCP 3-hydroxyanthranilate 3,4-dioxygenase OS=Xa... 29 6.4
sp|Q4UT95|3HAO_XANC8 3-hydroxyanthranilate 3,4-dioxygenase OS=Xa... 29 6.4

>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis
thaliana GN=BHLH13 PE=2 SV=1
Length = 590

Score = 40.0 bits (92), Expect = 0.004
Identities = 19/85 (22%), Positives = 42/85 (49%)
Frame = -3

Query: 264 ANSPSAGTMQHVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAF 85
+++P +N+ + TV+I CP E+HP +R+ E ++E+ ++ V +
Sbjct: 495 SSNPPISLDSDINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTV 554

Query: 84 QHTLKLDLTNCGHVTEDMLHAVVTR 10
HT + +T++ L + ++R
Sbjct: 555 LHTF---VVKSEELTKEKLISALSR 576


>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis
thaliana GN=BHLH3 PE=2 SV=1
Length = 467

Score = 37.4 bits (85), Expect = 0.023
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = -3

Query: 243 TMQHVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAFQHTLKL 67
T V+ ++ +A V+++CP E HP+++++ L E + ++++ +E HT L
Sbjct: 388 TPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTL 446


>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis
thaliana GN=BHLH4 PE=2 SV=1
Length = 589

Score = 36.2 bits (82), Expect = 0.052
Identities = 24/97 (24%), Positives = 43/97 (44%)
Frame = -3

Query: 303 GGEVSAISQTKEGANSPSAGTMQHVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIE 124
G S++ K S V++ + +A ++I C K NHP + + L EL +E
Sbjct: 487 GNAKSSVKDRKCLNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLE 546

Query: 123 LPPVHMSVVDEAFQHTLKLDLTNCGHVTEDMLHAVVT 13
+ +SVV++ + + N T+D L +T
Sbjct: 547 VNHASLSVVNDLMIQQATVKMGN-QFFTQDQLKVALT 582


>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE
OS=Arabidopsis thaliana GN=AIB PE=2 SV=2
Length = 566

Score = 35.8 bits (81), Expect = 0.068
Identities = 15/70 (21%), Positives = 33/70 (47%)
Frame = -3

Query: 264 ANSPSAGTMQHVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAF 85
+N+ + V+I N E V++ P ++HP +R++ + + L +S+ ++
Sbjct: 461 SNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTM 520

Query: 84 QHTLKLDLTN 55
HT + N
Sbjct: 521 FHTFVIKSNN 530


>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis
thaliana GN=RAP1 PE=1 SV=2
Length = 623

Score = 34.7 bits (78), Expect = 0.15
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3

Query: 231 VNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAF--QHTLKL 67
+ + + +A +++ K NHP RL+ L +L +E+ MSVV++ Q T+K+
Sbjct: 548 IEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVKM 604


>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis
thaliana GN=ATR2 PE=1 SV=1
Length = 592

Score = 33.1 bits (74), Expect = 0.44
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = -3

Query: 282 SQTKEGANSPSAGTMQHVNIHMK--NGEATVQITCPKENHPLTRLVGGLHELRIELPPVH 109
++ ++ +N S + + I +K + +++ C K++HP R + L EL +E+
Sbjct: 495 AKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHAS 554

Query: 108 MSVVDEAF--QHTLKL 67
+SVV++ Q T+K+
Sbjct: 555 LSVVNDLMIQQATVKM 570


>sp|O15439|MRP4_HUMAN Multidrug resistance-associated protein 4
OS=Homo sapiens GN=ABCC4 PE=1 SV=3
Length = 1325

Score = 30.0 bits (66), Expect = 3.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1

Query: 125 SYLRCTCQWLMRLFNILLNLTSQIAVMLQ 39
+Y R W++ +F ILLN +Q+A +LQ
Sbjct: 703 NYFRAGAHWIVFIFLILLNTAAQVAYVLQ 731


>sp|Q8K4E0|ALMS1_MOUSE Alstrom syndrome protein 1 homolog OS=Mus
musculus GN=Alms1 PE=1 SV=1
Length = 3251

Score = 30.0 bits (66), Expect = 3.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2

Query: 56 FVRSSLRVC*KASSTTDMCTGGSSIL 133
F+RS VC K SSTTD+CT S +
Sbjct: 1457 FIRSKKVVCFKESSTTDVCTQRESFV 1482


>sp|Q30S57|PDXJ_SULDN Pyridoxine 5'-phosphate synthase
OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=pdxJ PE=3 SV=1
Length = 260

Score = 29.6 bits (65), Expect = 4.9
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -3

Query: 294 VSAISQTKE-GANSPSAGTMQHVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELP 118
+ A+ ++KE GA T N++ A + + P NH + L HEL I L
Sbjct: 135 IEAVEKSKELGAEMVELHTGAFANLY-----AMLSSSLPHSNHSIKELELPRHELSIRLE 189

Query: 117 PVHMSVVDEAFQHTLKLDL 61
+ +DEA +H K+ L
Sbjct: 190 K-SILAIDEAAKHAKKIGL 207


>sp|P38079|YRO2_YEAST Protein YRO2 OS=Saccharomyces cerevisiae
GN=YRO2 PE=1 SV=1
Length = 344

Score = 29.3 bits (64), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2

Query: 256 SICWYDATC*HSHEKWGGYS 197
++CW A C HS KWG Y+
Sbjct: 153 TVCWLIAACVHSTYKWGYYT 172


tr_hit_id B8LLA6
Definition tr|B8LLA6|B8LLA6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 68
Score (bit) 54.3
E-value 3.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916196|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D09.
(311 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LLA6|B8LLA6_PICSI Putative uncharacterized protein OS=Picea... 54 3e-06
tr|A9SFN9|A9SFN9_PHYPA Predicted protein OS=Physcomitrella paten... 49 1e-04
tr|B8LLU3|B8LLU3_PICSI Putative uncharacterized protein OS=Picea... 44 0.005
tr|B4FY42|B4FY42_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.007
tr|Q41102|Q41102_PHAVU Phaseolin G-box binding protein PG2 (Frag... 41 0.034
tr|Q400L2|Q400L2_CATRO MYC2 OS=Catharanthus roseus GN=myc2 PE=2 ... 40 0.045
tr|A7PC89|A7PC89_VITVI Chromosome chr2 scaffold_11, whole genome... 39 0.13
tr|Q700C0|Q700C0_SOLTU MYC transcription factor (Fragment) OS=So... 39 0.17
tr|Q27IK8|Q27IK8_PEA G-box element binding protein OS=Pisum sati... 39 0.17
tr|Q5N8F6|Q5N8F6_ORYSJ BHLH protein-like (Os01g0705700 protein) ... 38 0.22
tr|Q41101|Q41101_PHAVU Phaseolin G-box binding protein PG1 OS=Ph... 38 0.22
tr|A2ZX10|A2ZX10_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.22
tr|A2WU88|A2WU88_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.22
tr|Q4JKA7|Q4JKA7_RHEAU Basic helix-loop-helix transcription fact... 38 0.29
tr|Q25BJ5|Q25BJ5_BRAOL Basic helix-loop-helix (BHLH) family tran... 38 0.29
tr|A7QWE9|A7QWE9_VITVI Chromosome undetermined scaffold_203, who... 37 0.38
tr|Q700B9|Q700B9_SOLTU MYC transcription factor (Fragment) OS=So... 37 0.65
tr|A6NAB4|A6NAB4_VITVI Myc2 bHLH protein OS=Vitis vinifera GN=My... 37 0.65
tr|Q9AYK0|Q9AYK0_ORYSA Putative MYC transcription factor OS=Oryz... 36 0.85
tr|Q6QJB9|Q6QJB9_ORYSA MYC protein OS=Oryza sativa PE=2 SV=1 36 0.85
tr|Q336P5|Q336P5_ORYSJ Os10g0575000 protein OS=Oryza sativa subs... 36 0.85
tr|B8BIE0|B8BIE0_ORYSI Putative uncharacterized protein OS=Oryza... 36 0.85
tr|A3C7K7|A3C7K7_ORYSJ Putative uncharacterized protein OS=Oryza... 36 0.85
tr|Q9ZPN6|Q9ZPN6_MAIZE Transcription factor MYC7E (Fragment) OS=... 35 1.4
tr|B6TSQ0|B6TSQ0_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 35 1.9
tr|B1N8M0|B1N8M0_BRAOG MYC OS=Brassica oleracea var. gemmifera P... 35 2.5
tr|B5YLJ3|B5YLJ3_THAPS Predicted protein OS=Thalassiosira pseudo... 34 4.2
tr|A9SFN7|A9SFN7_PHYPA Predicted protein OS=Physcomitrella paten... 34 4.2
tr|A9VBS9|A9VBS9_MONBE Predicted protein OS=Monosiga brevicollis... 34 4.2
tr|B0CXT8|B0CXT8_LACBS Predicted protein (Fragment) OS=Laccaria ... 34 4.2

>tr|B8LLA6|B8LLA6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 590

Score = 54.3 bits (129), Expect = 3e-06
Identities = 23/68 (33%), Positives = 44/68 (64%)
Frame = -3

Query: 231 VNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAFQHTLKLDLTNC 52
+++ M +GEATV+++CPKE+HP+ R++ L L++++ ++S +E HT + L
Sbjct: 510 IDVQMMSGEATVRVSCPKESHPVGRVMLALQRLQLDVHHANISAANENILHTFVIKLGGA 569

Query: 51 GHVTEDML 28
+T+D L
Sbjct: 570 QVLTKDQL 577


>tr|A9SFN9|A9SFN9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_164647 PE=4 SV=1
Length = 800

Score = 49.3 bits (116), Expect = 1e-04
Identities = 26/95 (27%), Positives = 51/95 (53%)
Frame = -3

Query: 288 AISQTKEGANSPSAGTMQHVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVH 109
+++ T N+PS GT + +H+ EA ++I C K++ L +++ L ELR+E+ +
Sbjct: 682 SVNSTSISGNAPS-GTKPTIAVHILGQEAMIRINCLKDSVALLQMMMALQELRLEVRHSN 740

Query: 108 MSVVDEAFQHTLKLDLTNCGHVTEDMLHAVVTR*C 4
S + H + + + H T++ L A++ R C
Sbjct: 741 TSTTQDMVLHIVIVKIEPTEHYTQEQLCAILERSC 775


>tr|B8LLU3|B8LLU3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 582

Score = 43.5 bits (101), Expect = 0.005
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = -3

Query: 207 EATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVV-DEAFQHTLKLDLTNCGHVTEDM 31
EA ++I C K NHP+ RL+ L EL +E+ +S V D T+ + +T G TE+
Sbjct: 511 EAIIRIQCTKHNHPVARLMTALQELDLEVLHASISTVKDSLIIQTVIVKMTR-GLYTEEQ 569

Query: 30 LHAVVTR 10
LHA++ +
Sbjct: 570 LHALLCK 576


>tr|B4FY42|B4FY42_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 349

Score = 43.1 bits (100), Expect = 0.007
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Frame = -3

Query: 267 GANSPSAGTMQHVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSV--VD 94
GA + + V + M G A++++ + L +LV GLH+LRI PP+H++V VD
Sbjct: 246 GAAGAAGSAVADVEVTMVEGHASLKVLARRRPKQLLKLVAGLHQLRI--PPLHLNVTTVD 303

Query: 93 EAFQHTLKL---DLTNCGHVTEDMLHAV 19
+T L D +N G V ED+ AV
Sbjct: 304 AMVLYTFSLKVEDDSNMGSV-EDIAAAV 330


>tr|Q41102|Q41102_PHAVU Phaseolin G-box binding protein PG2
(Fragment) OS=Phaseolus vulgaris GN=PG2 PE=2 SV=1
Length = 614

Score = 40.8 bits (94), Expect = 0.034
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = -3

Query: 282 SQTKEGANSPSAGTMQ-----HVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELP 118
+ TK G NS + Q +++ + +A ++I C K+NHP RL+ L EL +++
Sbjct: 514 NHTKHGGNSNIKSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVH 573

Query: 117 PVHMSVVDEAF--QHTLKL 67
+SVV++ Q T+K+
Sbjct: 574 HASVSVVNDLMIQQATVKM 592


>tr|Q400L2|Q400L2_CATRO MYC2 OS=Catharanthus roseus GN=myc2 PE=2
SV=1
Length = 699

Score = 40.4 bits (93), Expect = 0.045
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = -3

Query: 294 VSAISQTKEGANSPSAGTMQ-HVNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELP 118
+S+ Q + +N S G + +++ + EA +++ K NHP R++G L +L +EL
Sbjct: 594 LSSPDQDLKSSNKQSVGNLDMDIDVKIIGREAMIRVQSSKNNHPAARVMGALKDLDLELL 653

Query: 117 PVHMSVVDEAF--QHTLKL 67
+SVV++ Q+T+++
Sbjct: 654 HASVSVVNDLMIQQNTVRM 672


>tr|A7PC89|A7PC89_VITVI Chromosome chr2 scaffold_11, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015763001
PE=4 SV=1
Length = 501

Score = 38.9 bits (89), Expect = 0.13
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = -3

Query: 231 VNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAF--QHTLKL 67
+++ + +A ++I C K+NHP +L+G L EL +++ +SVV++ Q T+K+
Sbjct: 423 IDVKIIGWDAMIRIQCSKKNHPAAKLMGALKELDLDVNHASVSVVNDLMIQQATVKM 479


>tr|Q700C0|Q700C0_SOLTU MYC transcription factor (Fragment)
OS=Solanum tuberosum GN=jamyc2 PE=2 SV=1
Length = 692

Score = 38.5 bits (88), Expect = 0.17
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = -3

Query: 231 VNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAF--QHTLKLDLT 58
+++ + +A + I C K+NHP RL+ L EL +++ +SVV++ Q T+K+
Sbjct: 610 IDVKIIGWDAMIGIQCNKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKM--- 666

Query: 57 NCGHVTEDMLHAVV 16
H TE+ L +
Sbjct: 667 GSRHYTEEQLRVAL 680


>tr|Q27IK8|Q27IK8_PEA G-box element binding protein OS=Pisum sativum
GN=GBF PE=2 SV=1
Length = 646

Score = 38.5 bits (88), Expect = 0.17
Identities = 16/74 (21%), Positives = 41/74 (55%)
Frame = -3

Query: 231 VNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAFQHTLKLDLTNC 52
+++ + +A ++I C K+NHP +L+ L EL +++ +SVV++ +++ +
Sbjct: 568 IDVKIMGWDAMIRIQCSKKNHPAAKLMAALKELDLDVNHASVSVVNDLMIQQASINMGSR 627

Query: 51 GHVTEDMLHAVVTR 10
+ E +L + ++
Sbjct: 628 FYTQEQLLSVLSSK 641


>tr|Q5N8F6|Q5N8F6_ORYSJ BHLH protein-like (Os01g0705700 protein)
OS=Oryza sativa subsp. japonica GN=P0692C11.13 PE=4 SV=1
Length = 460

Score = 38.1 bits (87), Expect = 0.22
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = -3

Query: 231 VNIHMKNGEATVQITCPKENHPLTRLVGGLHELRIELPPVHMSVVDEAFQHTLKLDLTNC 52
V + E +++T P + HP++R+ + E +I + ++V D+A HTL +
Sbjct: 378 VEVKAMQDEVVLRVTTPLDEHPISRVFHAMRESQISVVASDVAVSDDAVTHTLMVRSAGP 437

Query: 51 GHVTEDMLHAVVTR 10
+T + + A ++R
Sbjct: 438 ERLTAETVLAAMSR 451