NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916198
Clone id YMU001_000084_D11
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCAGAGTGCCTCTTAACCAACCTTTACTCCCCCCTTTCCTCCTTTATACAGCCACCCCTC
ACTTCTTTGCTGTATTCCATTCAATAGCCTCCTCCTACCCCTTCCCTCTCCTTGCCAATT
TCCACCTTTTCTCTACATTCTGTGTCTATGCTTCATTACCATGTTGAGCTTAAACCCCAG
CATTTGCATACAGTTTGGACTTGATATTGCTGCCCATACATGTCATGAGTATCGTTCTCG
TTCCCTGCCGCAGTCGCTCAAGCTCCGGCTCCGTGGATGCTTCACTATAATTAGCTTAAT
CACAAGGCACATAAACAAAGGCTCATAGTTTAATGTACTGCACACATGCTATTTATATCC
ATTAAGTAGCACCAACAATGCTGTTGGCAGCTTGCCTTTGCCCAGAGCCTGGCGTGAAGT
GCACAACATGGAGCTTCTGTTTTCTTAATTTACTATGGTCCAGCCCCAAGGACTCCATGC
AAAAGTTGTTCGCTACTCAAGCATGGATTGCATACTTGTATAGTGTAGAATAAA
■■Homology search results ■■ -
sp_hit_id Q9KV27
Definition sp|Q9KV27|NUDC_VIBCH NADH pyrophosphatase OS=Vibrio cholerae
Align length 35
Score (bit) 30.0
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916198|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D11.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KV27|NUDC_VIBCH NADH pyrophosphatase OS=Vibrio cholerae GN=...    30   6.9  
sp|A5F3M9|NUDC_VIBC3 NADH pyrophosphatase OS=Vibrio cholerae ser...    30   6.9  
sp|Q7VSR5|MNME_BORPE tRNA modification GTPase mnmE OS=Bordetella...    30   6.9  
sp|Q7W2J0|MNME_BORPA tRNA modification GTPase mnmE OS=Bordetella...    30   6.9  
sp|Q7WDI4|MNME_BORBR tRNA modification GTPase mnmE OS=Bordetella...    30   6.9  

>sp|Q9KV27|NUDC_VIBCH NADH pyrophosphatase OS=Vibrio cholerae
           GN=nudC PE=3 SV=1
          Length = 269

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
 Frame = -3

Query: 348 HVCSTLNYEPLFMCLVI------KLIIVKHPRSRS 262
           H C TL+Y  +F C+++      ++++ +HPR R+
Sbjct: 129 HDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRN 163


>sp|A5F3M9|NUDC_VIBC3 NADH pyrophosphatase OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=nudC PE=3 SV=1
          Length = 269

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 6/35 (17%)
 Frame = -3

Query: 348 HVCSTLNYEPLFMCLVI------KLIIVKHPRSRS 262
           H C TL+Y  +F C+++      ++++ +HPR R+
Sbjct: 129 HDCRTLHYPRIFPCIIVAVRKQQQILLAQHPRHRN 163


>sp|Q7VSR5|MNME_BORPE tRNA modification GTPase mnmE OS=Bordetella
           pertussis GN=mnmE PE=3 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 338 LHTCYLYPLSSTNNAVGSLPLPRAWREVHNMELLFS*FTMVQ-PQGLHAKVVR 493
           LH      L  T++AV S+ + R W+E+   +L+     + Q P  L A++VR
Sbjct: 269 LHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPDHLDAQIVR 321


>sp|Q7W2J0|MNME_BORPA tRNA modification GTPase mnmE OS=Bordetella
           parapertussis GN=mnmE PE=3 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 338 LHTCYLYPLSSTNNAVGSLPLPRAWREVHNMELLFS*FTMVQ-PQGLHAKVVR 493
           LH      L  T++AV S+ + R W+E+   +L+     + Q P  L A++VR
Sbjct: 269 LHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPDHLDAQIVR 321


>sp|Q7WDI4|MNME_BORBR tRNA modification GTPase mnmE OS=Bordetella
           bronchiseptica GN=mnmE PE=3 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 338 LHTCYLYPLSSTNNAVGSLPLPRAWREVHNMELLFS*FTMVQ-PQGLHAKVVR 493
           LH      L  T++AV S+ + R W+E+   +L+     + Q P  L A++VR
Sbjct: 269 LHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPDHLDAQIVR 321
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916198|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_D11.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******