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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916200
Clone id YMU001_000084_E01
Library
Length 396
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGATATCCTTCCCACTTAAGGAATCCTTGAAGACTCCGACATCCAATCGTAAAAATGA
GCCACTGCAATTCCATACCTCAAGCTTTAGGTTGGTCCTATAGGTCGTGCACCGTCATGC
GGTGCGATTGTCAAGTACTATCACTATGCCTCCTCTTTAGAAAGTGAGGTTTCTCTTTTC
TCTAGCAGCCAAGATCTCAAGCTTGCATTCTTTTATGTGTGCTAGTTGAGACAATGTAAG
ATCATCTCCCAAGAAAATCCTTGGTTGCTTTAGCGTAGGCCTCTTTTTAAGGAAGTCCTT
CCTCTCTTCTATGGTAGTGAAACGCATGATTAGAGCACGTTCCTTGGAGGTTCCTACATC
ACCTACTCCTTTTTTTCCCACTCTCCATACTCCGGT
■■Homology search results ■■ -
sp_hit_id P38427
Definition sp|P38427|TSL1_YEAST Trehalose synthase complex regulatory subunit TSL1 OS=Saccharomyces cerevisiae
Align length 67
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916200|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E01.
         (396 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38427|TSL1_YEAST Trehalose synthase complex regulatory subun...    33   0.58 
sp|Q1CTU5|PYRC_HELPH Dihydroorotase OS=Helicobacter pylori (stra...    30   4.9  
sp|P82231|RRFC_SPIOL Ribosome-recycling factor, chloroplastic OS...    29   8.3  
sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2...    29   8.3  
sp|P14616|INSRR_HUMAN Insulin receptor-related protein OS=Homo s...    29   8.3  

>sp|P38427|TSL1_YEAST Trehalose synthase complex regulatory subunit
           TSL1 OS=Saccharomyces cerevisiae GN=TSL1 PE=1 SV=1
          Length = 1098

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -1

Query: 357 VGTSKERALIMRFTTIEERKDFLKKRPTLKQPRIFLGDDLTLSQ-LAHIKECKLEILAA- 184
           +G+SK+  L  +   + +R + L    ++ QP +FL  DL  SQ LA   E  L ++++ 
Sbjct: 647 IGSSKDVELERQIMIVVDRINSLSTNISISQPVVFLHQDLDFSQYLALSSEADLFVVSSL 706

Query: 183 REKRNLT 163
           RE  NLT
Sbjct: 707 REGMNLT 713


>sp|Q1CTU5|PYRC_HELPH Dihydroorotase OS=Helicobacter pylori (strain
           HPAG1) GN=pyrC PE=3 SV=1
          Length = 339

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 339 RALIMRFTTIEERKDFLKKRPTLKQ-PRIFLGDDLTLSQLAHIKECKLEILAAREKRNLT 163
           + LI   TT+E  ++ LK     K    ++  DDLTL +L    E  +  L    K   T
Sbjct: 43  KPLIDTPTTLEYEEEILKNSSNFKPLMSLYFNDDLTLEELQRAHEKGVRFLKLYPKGMTT 102

Query: 162 F*RGGIVIVLDNRT 121
             + G   +LD +T
Sbjct: 103 NAQNGTSDLLDEKT 116


>sp|P82231|RRFC_SPIOL Ribosome-recycling factor, chloroplastic
           OS=Spinacia oleracea GN=RRF PE=1 SV=1
          Length = 271

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 111 CTTYRTNLKLEVWNCSGSFLRLDVGVFKDSLSGKDII 1
           C   RTN+   VW  S +++R+D GV K   SGK ++
Sbjct: 33  CNIARTNVS--VWRSSANYVRMDCGVKK--FSGKAVV 65


>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2
           OS=Ashbya gossypii GN=RPB2 PE=3 SV=1
          Length = 1222

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 309 EERKDFLKKRPTLKQPRIFLGDDLTLSQLAHIKECKLEI 193
           EE K F+ + P + + +  L DDL+ S L  +KEC  ++
Sbjct: 156 EEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDM 194


>sp|P14616|INSRR_HUMAN Insulin receptor-related protein OS=Homo
           sapiens GN=INSRR PE=2 SV=2
          Length = 1297

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 333 LIMRFTTIEERKDFLKKRPTLKQPRIFLGDDLTLSQLAHIKECKLEILAA 184
           L+ R   +E  +D       ++  R+FLG  L + ++ H+++  L  L A
Sbjct: 84  LLFRVYGLESLRDLFPNLAVIRGTRLFLGYALVIFEMPHLRDVALPALGA 133
tr_hit_id B4RTV5
Definition tr|B4RTV5|B4RTV5_ALTMD BatD protein OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype)
Align length 69
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916200|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E01.
         (396 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4RTV5|B4RTV5_ALTMD BatD protein OS=Alteromonas macleodii (st...    35   1.9  
tr|B5VP33|B5VP33_YEAS6 YML100Wp-like protein OS=Saccharomyces ce...    33   9.2  
tr|B3LLF8|B3LLF8_YEAS1 Alpha,alpha-trehalose-phosphate synthase ...    33   9.2  
tr|A6ZLW7|A6ZLW7_YEAS7 Putative uncharacterized protein OS=Sacch...    33   9.2  

>tr|B4RTV5|B4RTV5_ALTMD BatD protein OS=Alteromonas macleodii
           (strain DSM 17117 / Deep ecotype) GN=MADE_02707 PE=4
           SV=1
          Length = 586

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 372 KGVGDVGTSKERALIMRFTTIEERKDFLKKRPTLKQ-PRIFLGDDLTLSQLAHIKECKLE 196
           KGV  +G + E+A   R  ++ +  D     P L+Q  +   GD+  LSQ A I     E
Sbjct: 471 KGVSVLGHTDEKAQFQRVMSLIKANDTRALTPALQQWLKTLTGDNAQLSQFASINSLMSE 530

Query: 195 ILAAREKRN 169
           + AAR  +N
Sbjct: 531 LYAARFAKN 539


>tr|B5VP33|B5VP33_YEAS6 YML100Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_130370 PE=4
           SV=1
          Length = 1061

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -1

Query: 357 VGTSKERALIMRFTTIEERKDFLKKRPTLKQPRIFLGDDLTLSQ-LAHIKECKLEILAA- 184
           +G+SK+  L  +   + +R + L    ++ QP +FL  DL  SQ LA   E  L ++++ 
Sbjct: 610 IGSSKDVELERQIMIVVDRINSLSTNISISQPVVFLHQDLDFSQYLALSSEADLFVVSSL 669

Query: 183 REKRNLT 163
           RE  NLT
Sbjct: 670 REGMNLT 676


>tr|B3LLF8|B3LLF8_YEAS1 Alpha,alpha-trehalose-phosphate synthase 123
           kDa subunit OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_01800 PE=4 SV=1
          Length = 1098

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -1

Query: 357 VGTSKERALIMRFTTIEERKDFLKKRPTLKQPRIFLGDDLTLSQ-LAHIKECKLEILAA- 184
           +G+SK+  L  +   + +R + L    ++ QP +FL  DL  SQ LA   E  L ++++ 
Sbjct: 647 IGSSKDVELERQIMIVVDRINSLSTNISISQPVVFLHQDLDFSQYLALSSEADLFVVSSL 706

Query: 183 REKRNLT 163
           RE  NLT
Sbjct: 707 REGMNLT 713


>tr|A6ZLW7|A6ZLW7_YEAS7 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_4079
           PE=4 SV=1
          Length = 741

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -1

Query: 357 VGTSKERALIMRFTTIEERKDFLKKRPTLKQPRIFLGDDLTLSQ-LAHIKECKLEILAA- 184
           +G+SK+  L  +   + +R + L    ++ QP +FL  DL  SQ LA   E  L ++++ 
Sbjct: 290 IGSSKDVELERQIMIVVDRINSLSTNISISQPVVFLHQDLDFSQYLALSSEADLFVVSSL 349

Query: 183 REKRNLT 163
           RE  NLT
Sbjct: 350 REGMNLT 356