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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916202
Clone id YMU001_000084_E03
Library
Length 173
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGGAGTAATGTAGTTGGGACACCAGCTGCAATGCTGCTTCAGCTGCCATCAAGCAACTG
TCACAGTAGTACATTCTTACACTCCCAACCCAGCAGAAGTTACACGAAGAGCAGATATTG
TGATTGCAGCTGTTGGTGTAGCTCACTTGGTTGGAGGAGACTGGATTAAGCCT
■■Homology search results ■■ -
sp_hit_id Q5N421
Definition sp|Q5N421|FOLD_SYNP6 Bifunctional protein folD OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
Align length 40
Score (bit) 58.9
E-value 7.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916202|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E03.
         (173 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5N421|FOLD_SYNP6 Bifunctional protein folD OS=Synechococcus ...    59   7e-09
sp|Q31Q60|FOLD_SYNE7 Bifunctional protein folD OS=Synechococcus ...    59   7e-09
sp|Q2G338|FOLD_NOVAD Bifunctional protein folD OS=Novosphingobiu...    56   6e-08
sp|A5VAA8|FOLD3_SPHWW Bifunctional protein folD 3 OS=Sphingomona...    54   2e-07
sp|Q28TR2|FOLD_JANSC Bifunctional protein folD OS=Jannaschia sp....    54   2e-07
sp|A0LE04|FOLD_MAGSM Bifunctional protein folD OS=Magnetococcus ...    54   3e-07
sp|Q5LNV2|FOLD1_SILPO Bifunctional protein folD 1/3 OS=Silicibac...    54   3e-07
sp|Q167Y9|FOLD1_ROSDO Bifunctional protein folD 1 OS=Roseobacter...    54   3e-07
sp|Q2JT84|FOLD_SYNJA Bifunctional protein folD OS=Synechococcus ...    53   5e-07
sp|A5CU17|FOLD_CLAM3 Bifunctional protein folD OS=Clavibacter mi...    53   5e-07
sp|O96553|C1TC_DROME C-1-tetrahydrofolate synthase, cytoplasmic ...    53   5e-07
sp|Q93E15|FOLD_RHILT Bifunctional protein folD OS=Rhizobium legu...    52   9e-07
sp|Q1MLB6|FOLD_RHIL3 Bifunctional protein folD OS=Rhizobium legu...    52   9e-07
sp|Q1QQJ9|FOLD_NITHX Bifunctional protein folD OS=Nitrobacter ha...    52   9e-07
sp|Q2JZV0|FOLD2_RHIEC Bifunctional protein folD 2 OS=Rhizobium e...    52   9e-07
sp|Q2KCC6|FOLD1_RHIEC Bifunctional protein folD 1 OS=Rhizobium e...    52   9e-07
sp|Q3SVE4|FOLD_NITWN Bifunctional protein folD OS=Nitrobacter wi...    52   1e-06
sp|A8LIR3|FOLD_DINSH Bifunctional protein folD OS=Dinoroseobacte...    52   1e-06
sp|B0RDR2|FOLD_CLAMS Bifunctional protein folD OS=Clavibacter mi...    52   1e-06
sp|A5EX57|FOLD_DICNV Bifunctional protein folD OS=Dichelobacter ...    51   2e-06
sp|Q5NP22|FOLD_ZYMMO Bifunctional protein folD OS=Zymomonas mobi...    51   2e-06
sp|Q2VYZ7|FOLD_MAGMM Bifunctional protein folD OS=Magnetospirill...    51   2e-06
sp|Q24UZ7|FOLD2_DESHY Bifunctional protein folD 2 OS=Desulfitoba...    51   2e-06
sp|Q6F8N7|FOLD2_ACIAD Bifunctional protein folD 2 OS=Acinetobact...    51   2e-06
sp|A8LWI0|FOLD1_SALAI Bifunctional protein folD 1 OS=Salinispora...    51   2e-06
sp|Q1GNH1|FOLD_SPHAL Bifunctional protein folD OS=Sphingopyxis a...    50   3e-06
sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitochondria...    50   3e-06
sp|Q1GE28|FOLD_SILST Bifunctional protein folD OS=Silicibacter s...    50   3e-06
sp|A6UB98|FOLD2_SINMW Bifunctional protein folD 2 OS=Sinorhizobi...    50   3e-06
sp|Q27772|C1TC_SPOFR C-1-tetrahydrofolate synthase, cytoplasmic ...    50   3e-06

>sp|Q5N421|FOLD_SYNP6 Bifunctional protein folD OS=Synechococcus sp.
           (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=folD
           PE=3 SV=2
          Length = 289

 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATVT+ HS TPN  EV R+ADIV+AAVG   LVG DWIKP
Sbjct: 184 ATVTIAHSRTPNLPEVCRQADIVVAAVGRPELVGADWIKP 223


>sp|Q31Q60|FOLD_SYNE7 Bifunctional protein folD OS=Synechococcus
           elongatus (strain PCC 7942) GN=folD PE=3 SV=1
          Length = 289

 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATVT+ HS TPN  EV R+ADIV+AAVG   LVG DWIKP
Sbjct: 184 ATVTIAHSRTPNLPEVCRQADIVVAAVGRPELVGADWIKP 223


>sp|Q2G338|FOLD_NOVAD Bifunctional protein folD OS=Novosphingobium
           aromaticivorans (strain DSM 12444) GN=folD PE=3 SV=1
          Length = 297

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 31/50 (62%), Positives = 33/50 (66%)
 Frame = +3

Query: 24  QLQCCFSCHQATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           QL    SC   TVTV HS T N  EV RRADIV+AAVG   +V GDWIKP
Sbjct: 177 QLLIAESC---TVTVAHSRTKNLPEVVRRADIVVAAVGRPEMVKGDWIKP 223


>sp|A5VAA8|FOLD3_SPHWW Bifunctional protein folD 3 OS=Sphingomonas
           wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=folD3
           PE=3 SV=1
          Length = 304

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 26/53 (49%), Positives = 33/53 (62%)
 Frame = +3

Query: 15  LGHQLQCCFSCHQATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           +G  +         TVT+ HS T + AEV RRADIV+AAVG   +V GDWI+P
Sbjct: 177 VGKPMAALLLAENCTVTIAHSRTRDLAEVVRRADIVVAAVGRPEMVRGDWIRP 229


>sp|Q28TR2|FOLD_JANSC Bifunctional protein folD OS=Jannaschia sp.
           (strain CCS1) GN=folD PE=3 SV=1
          Length = 308

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = +3

Query: 57  TVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           TVT+ HS T + A+V RRADI++AAVG A +V GDWIKP
Sbjct: 194 TVTIAHSRTKDLADVCRRADILVAAVGRAEMVRGDWIKP 232


>sp|A0LE04|FOLD_MAGSM Bifunctional protein folD OS=Magnetococcus sp.
           (strain MC-1) GN=folD PE=3 SV=1
          Length = 285

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIK 170
           ATVT+ HS TP+ AE  +RADIV+AAVG A++V G WIK
Sbjct: 183 ATVTICHSRTPDLAETVKRADIVVAAVGRANMVPGSWIK 221


>sp|Q5LNV2|FOLD1_SILPO Bifunctional protein folD 1/3 OS=Silicibacter
           pomeroyi GN=folD1 PE=3 SV=1
          Length = 296

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +3

Query: 57  TVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           TVT+ HS T + A+V RRADIV+AAVG   +V GDWIKP
Sbjct: 185 TVTIAHSRTKDLADVVRRADIVVAAVGRPEMVPGDWIKP 223


>sp|Q167Y9|FOLD1_ROSDO Bifunctional protein folD 1 OS=Roseobacter
           denitrificans (strain ATCC 33942 / OCh 114) GN=folD1
           PE=3 SV=1
          Length = 300

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +3

Query: 57  TVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           TVT+ HS T + A+V RRADIV+AAVG   +V GDWIKP
Sbjct: 185 TVTIAHSRTKDLADVVRRADIVVAAVGRPEMVPGDWIKP 223


>sp|Q2JT84|FOLD_SYNJA Bifunctional protein folD OS=Synechococcus sp.
           (strain JA-3-3Ab) GN=folD PE=3 SV=1
          Length = 289

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 28/53 (52%), Positives = 32/53 (60%)
 Frame = +3

Query: 15  LGHQLQCCFSCHQATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           +G  L        ATVTV HS TPN AEVTR ADIV+ AVG   L+  D +KP
Sbjct: 171 VGKPLSLMLLAADATVTVAHSRTPNLAEVTRSADIVVMAVGRPRLLTADMVKP 223


>sp|A5CU17|FOLD_CLAM3 Bifunctional protein folD OS=Clavibacter
           michiganensis subsp. michiganensis (strain NCPPB 382)
           GN=folD PE=3 SV=1
          Length = 300

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATVT+ HS T +  +  RRADIV+AAVGVAHL+  +W+KP
Sbjct: 189 ATVTLTHSRTRDLEQEVRRADIVVAAVGVAHLIKPEWVKP 228
tr_hit_id A9NV85
Definition tr|A9NV85|A9NV85_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 42
Score (bit) 67.8
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916202|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E03.
         (173 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NV85|A9NV85_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|A9TUE6|A9TUE6_PHYPA Predicted protein OS=Physcomitrella paten...    67   6e-10
tr|A9STN3|A9STN3_PHYPA Predicted protein (Fragment) OS=Physcomit...    63   9e-10
tr|A9TNY3|A9TNY3_PHYPA Predicted protein (Fragment) OS=Physcomit...    62   1e-09
tr|Q8W527|Q8W527_MAIZE Methylenetetrahydrofolate dehydrogenase/m...    65   1e-09
tr|B7ZXD5|B7ZXD5_MAIZE Putative uncharacterized protein OS=Zea m...    65   1e-09
tr|B6SJR7|B6SJR7_MAIZE C-1-tetrahydrofolate synthase, cytoplasmi...    65   1e-09
tr|Q0E4G1|Q0E4G1_ORYSJ Os02g0120900 protein OS=Oryza sativa subs...    62   2e-08
tr|A9SWW0|A9SWW0_PHYPA Predicted protein OS=Physcomitrella paten...    62   2e-08
tr|A3A2J6|A3A2J6_ORYSJ Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|A2X091|A2X091_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|A9SGC7|A9SGC7_PHYPA Predicted protein OS=Physcomitrella paten...    61   2e-08
tr|A9RVT5|A9RVT5_PHYPA Predicted protein (Fragment) OS=Physcomit...    61   3e-08
tr|Q2HVK9|Q2HVK9_MEDTR Tetrahydrofolate dehydrogenase/cyclohydro...    56   3e-08
tr|Q6K2P4|Q6K2P4_ORYSJ Os09g0327300 protein OS=Oryza sativa subs...    60   5e-08
tr|B0FBR6|B0FBR6_ORYSI Tetrahydrofolate dehydrogenase/cyclohydro...    60   5e-08
tr|A3BXI3|A3BXI3_ORYSJ Putative uncharacterized protein OS=Oryza...    60   5e-08
tr|A2YZX2|A2YZX2_ORYSI Putative uncharacterized protein OS=Oryza...    60   5e-08
tr|A2RVV7|A2RVV7_ARATH At2g38660 OS=Arabidopsis thaliana PE=2 SV=1     59   6e-08
tr|Q9ZVI8|Q9ZVI8_ARATH Methylenetetrahydrofolate dehydrogenase O...    59   6e-08
tr|Q015L3|Q015L3_OSTTA Methylenetetrahydrofolate dehydrogenase/m...    60   7e-08
tr|A4RZZ1|A4RZZ1_OSTLU Predicted protein OS=Ostreococcus lucimar...    60   7e-08
tr|B3E2I3|B3E2I3_GEOLS Methenyltetrahydrofolate cyclohydrolase O...    59   9e-08
tr|A7PZ86|A7PZ86_VITVI Chromosome chr15 scaffold_40, whole genom...    57   1e-07
tr|Q5WN02|Q5WN02_ORYSJ Os05g0150800 protein OS=Oryza sativa subs...    59   1e-07
tr|Q2PES9|Q2PES9_TRIPR Putative tetrahydrofolate synthase OS=Tri...    59   1e-07
tr|A6XMY4|A6XMY4_TRIMO 5,10-methylene-tetrahydrofolate dehydroge...    59   1e-07
tr|A3B016|A3B016_ORYSJ Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A2Y0G7|A2Y0G7_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|B6TJF9|B6TJF9_MAIZE FolD bifunctional protein OS=Zea mays PE=...    58   3e-07

>tr|A9NV85|A9NV85_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 393

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/42 (71%), Positives = 36/42 (85%)
 Frame = +3

Query: 48  HQATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           H ATVT+VHSYT N  ++TR ADIVI+AVGVA+LV GDW+KP
Sbjct: 283 HNATVTIVHSYTKNAEDITREADIVISAVGVANLVRGDWLKP 324


>tr|A9TUE6|A9TUE6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_150920 PE=4 SV=1
          Length = 307

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 30/40 (75%), Positives = 34/40 (85%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATVTVVHS TPNPAE+TR ADI++AA G A LV GDW+KP
Sbjct: 197 ATVTVVHSQTPNPAEITREADILVAAAGKAELVRGDWLKP 236


>tr|A9STN3|A9STN3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_135105 PE=4 SV=1
          Length = 306

 Score = 62.8 bits (151), Expect(2) = 9e-10
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIK 170
           ATVTVVH +TPNPAE TR+ADIV++A GVA LV G W+K
Sbjct: 181 ATVTVVHEHTPNPAEATRKADIVVSATGVAQLVRGHWLK 219



 Score = 23.5 bits (49), Expect(2) = 9e-10
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 5   SNVVGTPAAMLLQ 43
           SNVVG P A+LLQ
Sbjct: 165 SNVVGLPTALLLQ 177


>tr|A9TNY3|A9TNY3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_148331 PE=4 SV=1
          Length = 308

 Score = 62.4 bits (150), Expect(2) = 1e-09
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIK 170
           ATVTV+H +TPNPAE T+RADIV++A GVA LV G W+K
Sbjct: 181 ATVTVIHEHTPNPAEATKRADIVVSATGVAQLVRGHWLK 219



 Score = 23.5 bits (49), Expect(2) = 1e-09
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 5   SNVVGTPAAMLLQ 43
           SNVVG P A+LLQ
Sbjct: 165 SNVVGLPTALLLQ 177


>tr|Q8W527|Q8W527_MAIZE Methylenetetrahydrofolate
           dehydrogenase/methylenetetrahydrofolate cylcohydrolase
           isoform 2 (Fragment) OS=Zea mays PE=2 SV=1
          Length = 160

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATV++VHS T NP ++TR+ADIVIAAVGVA+LV GDWIKP
Sbjct: 70  ATVSIVHSQTKNPEQITRQADIVIAAVGVANLVRGDWIKP 109


>tr|B7ZXD5|B7ZXD5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 369

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATV++VHS T NP ++TR+ADIVIAAVGVA+LV GDWIKP
Sbjct: 261 ATVSIVHSQTKNPEQITRQADIVIAAVGVANLVRGDWIKP 300


>tr|B6SJR7|B6SJR7_MAIZE C-1-tetrahydrofolate synthase, cytoplasmic
           OS=Zea mays PE=2 SV=1
          Length = 369

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATV++VHS T NP ++TR+ADIVIAAVGVA+LV GDWIKP
Sbjct: 261 ATVSIVHSQTKNPEQITRQADIVIAAVGVANLVRGDWIKP 300


>tr|Q0E4G1|Q0E4G1_ORYSJ Os02g0120900 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0120900 PE=4 SV=1
          Length = 371

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATV++VHS T  P E+TR+ADIVIAAVGVA+LV G WIKP
Sbjct: 263 ATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKP 302


>tr|A9SWW0|A9SWW0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234304 PE=4 SV=1
          Length = 402

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATVTVVHS+TPN AEVTR +DIVIAA GV  +V G W+KP
Sbjct: 292 ATVTVVHSHTPNLAEVTRNSDIVIAAAGVPFMVQGSWLKP 331


>tr|A3A2J6|A3A2J6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005018 PE=4 SV=1
          Length = 371

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = +3

Query: 54  ATVTVVHSYTPNPAEVTRRADIVIAAVGVAHLVGGDWIKP 173
           ATV++VHS T  P E+TR+ADIVIAAVGVA+LV G WIKP
Sbjct: 263 ATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKP 302