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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916203
Clone id YMU001_000084_E04
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAATAAGGAGGTAGACTTTCATTTTTTGTGCAATTGAGACCTTCGTGCAAAAGCAAGGTC
TAATTTTTGTGGCACAAACAAAAATTTAAGCAACTATCTGTATTATGCAGCCCCCATAAA
CTAGATTCAGCAATTTGTTTTGTTCCGACTCTTGTACACAGTGTAGCTGCTATTCACTAA
CTGTAGCTCATCCTATCGCACTCTCTTGTTCACATTTTTGACAGTTCGCTTGTCTCTCAA
CTTTGTTCAATTCCTCCCAAAACAGCTTCAAGGTAGTTCTCCCTGTTCCTACAAATAATG
ATACATAAGGATGTTAATCCCTCATGTACTAAAGTCAAACCTCTGCCTCTATGTGTGTCT
GGGGGAGTAGGAAAGAAAAGAACACGCTACTGTACTCTTGCATGCAATGATCCCACAGCA
CCTTTTATATACTGAGCAACAGGCAAGTCAACCATCCTCAGCATTGTGACGTAAATCCAA
TCAAAATGCTCAG
■■Homology search results ■■ -
sp_hit_id A1JKW8
Definition sp|A1JKW8|MDTD_YERE8 Putative multidrug resistance protein mdtD OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length 46
Score (bit) 30.8
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916203|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E04.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1JKW8|MDTD_YERE8 Putative multidrug resistance protein mdtD ...    31   3.5  
sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taur...    30   5.9  
sp|B1JSD2|MDTD_YERPY Putative multidrug resistance protein mdtD ...    30   7.8  
sp|Q668C4|MDTD_YERPS Putative multidrug resistance protein mdtD ...    30   7.8  
sp|A4TMR4|MDTD_YERPP Putative multidrug resistance protein mdtD ...    30   7.8  
sp|Q1CK62|MDTD_YERPN Putative multidrug resistance protein mdtD ...    30   7.8  
sp|A9QZU7|MDTD_YERPG Putative multidrug resistance protein mdtD ...    30   7.8  
sp|Q7CJL1|MDTD_YERPE Putative multidrug resistance protein mdtD ...    30   7.8  
sp|B2K9M2|MDTD_YERPB Putative multidrug resistance protein mdtD ...    30   7.8  
sp|Q1C5L8|MDTD_YERPA Putative multidrug resistance protein mdtD ...    30   7.8  
sp|A7FG15|MDTD_YERP3 Putative multidrug resistance protein mdtD ...    30   7.8  

>sp|A1JKW8|MDTD_YERE8 Putative multidrug resistance protein mdtD
           OS=Yersinia enterocolitica serotype O:8 / biotype 1B
           (strain 8081) GN=mdtD PE=3 SV=2
          Length = 469

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G +GS+ AR+   +L F TP     G G T  H GL  + +II
Sbjct: 259 YSLGLIGSMSARIGSGMLPFMTPVFLQIGLGFTPFHAGLMMIPMII 304


>sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos
          taurus GN=SIL1 PE=2 SV=1
          Length = 462

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -3

Query: 95 SCLNFCLCHKN 63
          SC NFCLCHKN
Sbjct: 24 SCFNFCLCHKN 34


>sp|B1JSD2|MDTD_YERPY Putative multidrug resistance protein mdtD
           OS=Yersinia pseudotuberculosis serotype O:3 (strain
           YPIII) GN=mdtD PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q668C4|MDTD_YERPS Putative multidrug resistance protein mdtD
           OS=Yersinia pseudotuberculosis GN=mdtD PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|A4TMR4|MDTD_YERPP Putative multidrug resistance protein mdtD
           OS=Yersinia pestis (strain Pestoides F) GN=mdtD PE=3
           SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q1CK62|MDTD_YERPN Putative multidrug resistance protein mdtD
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdtD
           PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|A9QZU7|MDTD_YERPG Putative multidrug resistance protein mdtD
           OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdtD
           PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q7CJL1|MDTD_YERPE Putative multidrug resistance protein mdtD
           OS=Yersinia pestis GN=mdtD PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|B2K9M2|MDTD_YERPB Putative multidrug resistance protein mdtD
           OS=Yersinia pseudotuberculosis serotype IB (strain
           PB1/+) GN=mdtD PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308


>sp|Q1C5L8|MDTD_YERPA Putative multidrug resistance protein mdtD
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdtD
           PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 431 YIKGAVGSLHARVQ*RVLFFPTPPDTHRGRGLTLVHEGLTSLCIII 294
           Y  G VGS+ AR+   +L F TP     G G +  H GL  + +II
Sbjct: 263 YTLGLVGSMSARIGSGMLPFMTPIFLQIGLGFSPFHAGLMMIPMII 308
tr_hit_id A0CEY8
Definition tr|A0CEY8|A0CEY8_PARTE Chromosome undetermined scaffold_173, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 94
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916203|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E04.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0CEY8|A0CEY8_PARTE Chromosome undetermined scaffold_173, who...    33   7.1  

>tr|A0CEY8|A0CEY8_PARTE Chromosome undetermined scaffold_173, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00037794001 PE=4 SV=1
          Length = 1183

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/94 (24%), Positives = 35/94 (37%)
 Frame = +3

Query: 99   CIMQPP*TRFSNLFCSDSCTQCSCYSLTVAHPIALSCSHF*QFACLSTLFNSSQNSFKVV 278
            CI Q      SN    DSC+Q +       +     C+   +     T+ NS  N     
Sbjct: 1015 CIWQEQVNSTSNCLQMDSCSQANSIEKNCKN---FGCAFIPEALINGTVQNSQCNQMDCS 1071

Query: 279  LPVPTNNDT*GC*SLMY*SQTSASMCVWGSRKEK 380
            L  P +N   GC  L+       ++C W ++  K
Sbjct: 1072 LLNPNSNSDIGCKPLINTINKQITLCAWSTKTNK 1105