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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916208
Clone id YMU001_000084_E10
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGTCAAGTTTAAGCTATATCAATGAGGGTAGCCGCAGGAAGGGGATGTTACAGATAATG
ATGAGTGGGACTTCTTTGGTTACATCTTCAACAAATGATGCACAATAAATATTGTTACAA
AGAATGTATGATTTTCTTCTTTACATTGGGTAAACTTCTGAAGCTCTATGTAATCAATGA
AGTGAAGACAAGAACCTAAAAGCGATTGCTGAGAATGTGTGGGTTTGATCCACTTGTGTA
TGCAGCATCCAAGCTGTTTAGCTTGGACATGCGTTGAAGCAAAATTTGTATGTGCCGAAT
GTGAGGGCTCCCTATATGGTGAGGATTACAACCATTGAAAGGGTCAGGCCTTAAGTAAGT
GAACCTTTACTCTGATGAACAGTTAGCAATACGAGGGTGCCCGTCGTGTAGGGCTAAAGA
ATGAGGCCGAGCAAGGCTGGAATCACCCAAAGAGTTCGCCAAGAGAAGAGCTACTTGATG
CTATGAACAGAGATGCTACCGCTGGAGCTGCCTTGAAAGCAATGTGGGGTGCAAATCCAA
TGA
■■Homology search results ■■ -
sp_hit_id Q71QF9
Definition sp|Q71QF9|PRIC1_RAT Prickle-like protein 1 OS=Rattus norvegicus
Align length 56
Score (bit) 30.0
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916208|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E10.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q71QF9|PRIC1_RAT Prickle-like protein 1 OS=Rattus norvegicus ...    30   7.6  
sp|Q3U5C7|PRIC1_MOUSE Prickle-like protein 1 OS=Mus musculus GN=...    30   7.6  
sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 OS=Homo sapiens GN=...    30   7.6  

>sp|Q71QF9|PRIC1_RAT Prickle-like protein 1 OS=Rattus norvegicus
           GN=Prickle1 PE=2 SV=2
          Length = 831

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 207 C*ECVGLIHLCMQHPSCLAWTCVEAKFVCAECEGSLYGEDYNH*KGQALSK*TFTL 374
           C E +G+ H  M +     W   EA F CA+C+ SL G  +   +GQ     T +L
Sbjct: 254 CGEHIGVDHAQMTYDG-QHWHATEACFSCAQCKASLLGCPFLPKQGQIYCSKTCSL 308


>sp|Q3U5C7|PRIC1_MOUSE Prickle-like protein 1 OS=Mus musculus
           GN=Prickle1 PE=2 SV=1
          Length = 832

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 207 C*ECVGLIHLCMQHPSCLAWTCVEAKFVCAECEGSLYGEDYNH*KGQALSK*TFTL 374
           C E +G+ H  M +     W   EA F CA+C+ SL G  +   +GQ     T +L
Sbjct: 254 CGEHIGVDHAQMTYDG-QHWHATEACFSCAQCKASLLGCPFLPKQGQIYCSKTCSL 308


>sp|Q96MT3|PRIC1_HUMAN Prickle-like protein 1 OS=Homo sapiens
           GN=PRICKLE1 PE=1 SV=2
          Length = 831

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 207 C*ECVGLIHLCMQHPSCLAWTCVEAKFVCAECEGSLYGEDYNH*KGQALSK*TFTL 374
           C E +G+ H  M +     W   EA F CA+C+ SL G  +   +GQ     T +L
Sbjct: 254 CGEHIGVDHAQMTYDG-QHWHATEACFSCAQCKASLLGCPFLPKQGQIYCSKTCSL 308
tr_hit_id A9DFC9
Definition tr|A9DFC9|A9DFC9_9GAMM 3-hydroxyisobutyrate dehydrogenase OS=Shewanella benthica KT99
Align length 30
Score (bit) 34.7
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916208|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E10.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9DFC9|A9DFC9_9GAMM 3-hydroxyisobutyrate dehydrogenase OS=She...    35   3.4  
tr|A8ABR2|A8ABR2_IGNH4 NAD-dependent epimerase/dehydratase OS=Ig...    34   4.4  

>tr|A9DFC9|A9DFC9_9GAMM 3-hydroxyisobutyrate dehydrogenase
           OS=Shewanella benthica KT99 GN=KT99_05482 PE=4 SV=1
          Length = 300

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 16  YINEGSRRKGMLQIMMSGTSLVTSSTNDAQ 105
           Y+ EGS  KG+L ++ +GT L+  ST DAQ
Sbjct: 75  YLGEGSSDKGLLDVLAAGTLLIDCSTIDAQ 104


>tr|A8ABR2|A8ABR2_IGNH4 NAD-dependent epimerase/dehydratase
           OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 /
           JCM 14125) GN=Igni_1187 PE=4 SV=1
          Length = 262

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 161 KLYVINEVKTRT*KRLLRMCGFDPLVYAASKLF 259
           ++Y+I+E+     + +L  CG D +VYAA KLF
Sbjct: 45  EMYLIDEISEEELREVLERCGADAVVYAAGKLF 77