BP916209
Clone id YMU001_000084_E11
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATACATGGACACCTACAAGAAAGAGCTCGACGCAAGGAAGGCAGAAAAGGAGCAGAAAGA
GGAAATGCGCAAACAGGAGTCGCTGGCAAAGCTTAAACAAGATATCGAAGAATCTAAAGG
GAAAAAAGTAGTGTTGAGCTCAATCAAAGGGAAGGAGAAAATGAAAGAGGAAGAGGATTA
TGAGGAAGAAGGAATGTATGAACAGGATGATGATAGTGAAGATAATGAAGAGGAAGAGGA
TAGTGATACTTGATATGCATCAAGGTCATGCTTGACGGGGTAAAAAAGGTTAGAAATATG
CATACATCTGGTTATCTTTTCTTTTGAATCCTTTCCATGCCCTCGACTAACTCTTTTTTG
TAGCCTATTTAACTTGTTTTTGATCTCATCAGTCTTTGAACTCTTCACTAGCGCAAGCGC
TCACCGT
■■Homology search results ■■ -
sp_hit_id A3LU10
Definition sp|A3LU10|MSH3_PICST DNA mismatch repair protein MSH3 OS=Pichia stipitis
Align length 43
Score (bit) 30.4
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916209|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E11.
(427 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A3LU10|MSH3_PICST DNA mismatch repair protein MSH3 OS=Pichia ... 30 3.1
sp|O13761|YF2B_SCHPO Uncharacterized protein C17A2.11, mitochond... 30 5.3

>sp|A3LU10|MSH3_PICST DNA mismatch repair protein MSH3 OS=Pichia
stipitis GN=MSH3 PE=3 SV=3
Length = 1025

Score = 30.4 bits (67), Expect = 3.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2

Query: 417 LALVKSSKTDEIKNKLNRLQKRVSRGHGKDSKEKITRCMHISN 289
L L + SKT + N LN++ + KD +E++T+ ++ N
Sbjct: 561 LELSEMSKTTVVSNLLNKINRSYVMNESKDPEEQVTQFFNLDN 603


>sp|O13761|YF2B_SCHPO Uncharacterized protein C17A2.11,
mitochondrial OS=Schizosaccharomyces pombe
GN=SPAC17A2.11 PE=2 SV=2
Length = 217

Score = 29.6 bits (65), Expect = 5.3
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2

Query: 296 ICIHLVIFSFESFPCPRLTLFCSLFNLFLISSVFELFTSASA 421
I H + FSF SFP LF F+LFL S+ F L + S+
Sbjct: 177 ISFHFLFFSFLSFPLLSFILF-PCFSLFLSSNSFSLASPFSS 217


tr_hit_id A9SSV0
Definition tr|A9SSV0|A9SSV0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 33.5
E-value 5.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916209|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_E11.
(427 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SSV0|A9SSV0_PHYPA Predicted protein OS=Physcomitrella paten... 33 5.5
tr|Q9SVR7|Q9SVR7_ARATH Putative uncharacterized protein F17L22.2... 33 9.4
tr|Q8W586|Q8W586_ARATH AT4g21800/F17L22_260 OS=Arabidopsis thali... 33 9.4
tr|Q8L9E7|Q8L9E7_ARATH Putative uncharacterized protein OS=Arabi... 33 9.4
tr|O49703|O49703_ARATH Putative uncharacterized protein T8O5.10 ... 33 9.4

>tr|A9SSV0|A9SSV0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_215392 PE=4 SV=1
Length = 374

Score = 33.5 bits (75), Expect = 5.5
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2

Query: 2 YMDTYKKELDXXXXXXXXXXXXXXXXSLAKLKQDIEESKGKKVVLSS 142
YM++Y+ +L+ ++A+L++D+++SKG+ VVLS+
Sbjct: 283 YMESYRPDLEKRKAEKAQVEAKRREANMARLQKDLDDSKGQNVVLSA 329


>tr|Q9SVR7|Q9SVR7_ARATH Putative uncharacterized protein F17L22.260
(Putative uncharacterized protein AT4g21800) (Fragment)
OS=Arabidopsis thaliana GN=F17L22.260 PE=2 SV=1
Length = 372

Score = 32.7 bits (73), Expect = 9.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2

Query: 2 YMDTYKKELDXXXXXXXXXXXXXXXXSLAKLKQDIEESKGKKVVLSS 142
YM+TYK +LD + KL++D+E S+G VVL++
Sbjct: 280 YMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLNT 326


>tr|Q8W586|Q8W586_ARATH AT4g21800/F17L22_260 OS=Arabidopsis thaliana
GN=At4g21800 PE=2 SV=1
Length = 379

Score = 32.7 bits (73), Expect = 9.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2

Query: 2 YMDTYKKELDXXXXXXXXXXXXXXXXSLAKLKQDIEESKGKKVVLSS 142
YM+TYK +LD + KL++D+E S+G VVL++
Sbjct: 287 YMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLNT 333


>tr|Q8L9E7|Q8L9E7_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 379

Score = 32.7 bits (73), Expect = 9.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2

Query: 2 YMDTYKKELDXXXXXXXXXXXXXXXXSLAKLKQDIEESKGKKVVLSS 142
YM+TYK +LD + KL++D+E S+G VVL++
Sbjct: 287 YMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLNT 333


>tr|O49703|O49703_ARATH Putative uncharacterized protein T8O5.10
OS=Arabidopsis thaliana GN=T8O5.10 PE=4 SV=1
Length = 373

Score = 32.7 bits (73), Expect = 9.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2

Query: 2 YMDTYKKELDXXXXXXXXXXXXXXXXSLAKLKQDIEESKGKKVVLSS 142
YM+TYK +LD + KL++D+E S+G VVL++
Sbjct: 281 YMETYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLNT 327