BP916222
Clone id YMU001_000084_G01
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAAGACAAGAGATTGCAGGGTGAGCTTCCACAGATATGAAGCTCACACCTACTTACATAC
AACAAACTTTTTCTGCTTGGAGTGAAGGACTATCATGTTATCCACACTGACCTGGCCATG
CGCTGACTACCGACGTATTACACATAGAACTCTGCTGCACATTATCATGGATTTTCCCCT
TACCATCCCCCATCATCATCTTCCCACAACTCCATCACGGGCACCTTCGACTTTCCCATT
TCTGTGACGCTTCCATGATTTCCATCAAAATTGATGCAATATAACTGACACTTGGTCGGG
CCACCGGATCTTGAGAATACTACACCGACTTGCCAACAATAACATCTTCATGGCGCAATG
CAGAGGATACTGACCTTTCAATGTGGGATCCACCCAATGTTTCAGGTTCTCTTGAGCAAC
GACATCGTCACCTTGTAACACAGAGTTTGTCGACTCCCACAGGAATG
■■Homology search results ■■ -
sp_hit_id Q5YWC9
Definition sp|Q5YWC9|NUOC_NOCFA NADH-quinone oxidoreductase subunit C OS=Nocardia farcinica
Align length 65
Score (bit) 30.8
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916222|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_G01.
(467 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5YWC9|NUOC_NOCFA NADH-quinone oxidoreductase subunit C OS=No... 31 3.1
sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musc... 30 4.0
sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sap... 30 6.8
sp|Q87C26|SYH_XYLFT Histidyl-tRNA synthetase OS=Xylella fastidio... 29 8.9
sp|Q9PBC2|SYH_XYLFA Histidyl-tRNA synthetase OS=Xylella fastidio... 29 8.9
sp|Q09429|ABCC8_RAT ATP-binding cassette transporter sub-family ... 29 8.9
sp|Q09428|ABCC8_HUMAN ATP-binding cassette transporter sub-famil... 29 8.9
sp|Q09427|ABCC8_CRICR ATP-binding cassette transporter sub-famil... 29 8.9

>sp|Q5YWC9|NUOC_NOCFA NADH-quinone oxidoreductase subunit C
OS=Nocardia farcinica GN=nuoC PE=3 SV=1
Length = 253

Score = 30.8 bits (68), Expect = 3.1
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Frame = +2

Query: 131 RRITHRTLLHIIMDFPLTIPH-----HHLPTTPSRAPSTFPFL*RFHDFHQN*CNIT--D 289
R ITH LL + P T PH PTT T+ F D H + IT D
Sbjct: 159 RSITHNRLLRVETCAPDTDPHIPSLFEVYPTTDWHERETYDFFGILFDGHPSLTRITMPD 218

Query: 290 TWSGH 304
W GH
Sbjct: 219 DWRGH 223


>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musculus
GN=Zfhx4 PE=1 SV=1
Length = 3550

Score = 30.4 bits (67), Expect = 4.0
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +1

Query: 235 PISVTLP*FPSKLMQYN*HLVGPPDLENTTPTCQQ*HLHGAMQRILTFQCGIHPMF 402
P+S+ LP FPS +MQ H PP L P Q L + ++ Q GI P F
Sbjct: 2010 PVSLDLPLFPSIMMQPVQHPALPPQLALQLP--QMDTLSADLTQLCQQQLGIDPNF 2063


>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sapiens
GN=ZFHX4 PE=1 SV=1
Length = 3567

Score = 29.6 bits (65), Expect = 6.8
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1

Query: 235 PISVTLP*FPSKLMQYN*HLVGPPDLENTTPTCQQ*HLHGAMQRILTFQCGIHPMF 402
P+S+ LP FPS +MQ H PP L P Q L + ++ Q G+ P F
Sbjct: 2025 PVSLDLPLFPSIMMQPVQHPALPPQLALQLP--QMDALSADLTQLCQQQLGLDPNF 2078


>sp|Q87C26|SYH_XYLFT Histidyl-tRNA synthetase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=hisS PE=3 SV=1
Length = 466

Score = 29.3 bits (64), Expect = 8.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1

Query: 323 VVFSRSGGPTKCQLYCINFDGNHGSVTEMGKSKVPVMEL 207
V+ ++SGG T+ Q+Y + G + E G +++P + L
Sbjct: 50 VLLTKSGGETERQVYFVQSTGTLANAAESGATRLPELAL 88


>sp|Q9PBC2|SYH_XYLFA Histidyl-tRNA synthetase OS=Xylella fastidiosa
GN=hisS PE=3 SV=1
Length = 466

Score = 29.3 bits (64), Expect = 8.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1

Query: 323 VVFSRSGGPTKCQLYCINFDGNHGSVTEMGKSKVPVMEL 207
V+ ++SGG T+ Q+Y + G + E G +++P + L
Sbjct: 50 VLLTKSGGETERQVYFVQSTGTLANAAESGATRLPELAL 88


>sp|Q09429|ABCC8_RAT ATP-binding cassette transporter sub-family C
member 8 OS=Rattus norvegicus GN=Abcc8 PE=1 SV=4
Length = 1582

Score = 29.3 bits (64), Expect = 8.9
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2

Query: 278 NITDTWSGHRILRILHRLANNNIFMAQCRGY*PFNVGSTQCFRFS*ATTSSPCNTEFVDS 457
++T W+G ++ + LHR N I +A R + +GS RF SS CNT +D
Sbjct: 1083 SVTVEWTGLKVAKRLHRSLLNRIILAPMRFFETTPLGSI-LNRF-----SSDCNT--IDQ 1134

Query: 458 H 460
H
Sbjct: 1135 H 1135


>sp|Q09428|ABCC8_HUMAN ATP-binding cassette transporter sub-family C
member 8 OS=Homo sapiens GN=ABCC8 PE=1 SV=5
Length = 1581

Score = 29.3 bits (64), Expect = 8.9
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2

Query: 278 NITDTWSGHRILRILHRLANNNIFMAQCRGY*PFNVGSTQCFRFS*ATTSSPCNTEFVDS 457
++T W+G ++ + LHR N I +A R + +GS RF SS CNT +D
Sbjct: 1082 SVTVEWTGLKVAKRLHRSLLNRIILAPMRFFETTPLGSI-LNRF-----SSDCNT--IDQ 1133

Query: 458 H 460
H
Sbjct: 1134 H 1134


>sp|Q09427|ABCC8_CRICR ATP-binding cassette transporter sub-family C
member 8 OS=Cricetus cricetus GN=ABCC8 PE=1 SV=3
Length = 1582

Score = 29.3 bits (64), Expect = 8.9
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2

Query: 278 NITDTWSGHRILRILHRLANNNIFMAQCRGY*PFNVGSTQCFRFS*ATTSSPCNTEFVDS 457
++T W+G ++ + LHR N I +A R + +GS RF SS CNT +D
Sbjct: 1083 SVTVEWTGLKVAKRLHRSLLNRIILAPMRFFETTPLGSI-LNRF-----SSDCNT--IDQ 1134

Query: 458 H 460
H
Sbjct: 1135 H 1135


tr_hit_id Q1EP38
Definition tr|Q1EP38|Q1EP38_MUSBA Protein kinase family protein OS=Musa balbisiana
Align length 47
Score (bit) 38.5
E-value 0.003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916222|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_G01.
(467 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1EP38|Q1EP38_MUSBA Protein kinase family protein OS=Musa bal... 39 0.003
tr|A9SNC9|A9SNC9_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.004
tr|A7QPK0|A7QPK0_VITVI Chromosome chr18 scaffold_137, whole geno... 38 0.015
tr|O22808|O22808_ARATH At2g33580 OS=Arabidopsis thaliana GN=At2g... 39 0.015
tr|A5YJW0|A5YJW0_SOYBN LYK11 OS=Glycine max GN=LYK11 PE=4 SV=1 33 0.043
tr|A9U5R6|A9U5R6_PHYPA Predicted protein OS=Physcomitrella paten... 35 0.045
tr|Q0E358|Q0E358_ORYSJ Os02g0193000 protein OS=Oryza sativa subs... 39 0.10
tr|A3A421|A3A421_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.10
tr|A2X1X5|A2X1X5_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.10
tr|A7PV21|A7PV21_VITVI Chromosome chr4 scaffold_32, whole genome... 31 0.15
tr|A7QY05|A7QY05_VITVI Chromosome undetermined scaffold_235, who... 31 0.20
tr|A2ZXP0|A2ZXP0_ORYSJ Putative uncharacterized protein OS=Oryza... 32 0.25
tr|Q9FZA7|Q9FZA7_ARATH Putative uncharacterized protein T14L22.1... 31 0.26
tr|A7P727|A7P727_VITVI Chromosome chr9 scaffold_7, whole genome ... 31 0.26
tr|Q5JNK2|Q5JNK2_ORYSJ Putative Nod-factor receptor 1b (Os01g074... 32 0.26
tr|A5YJW4|A5YJW4_SOYBN LYK8 OS=Glycine max GN=LYK8 PE=4 SV=1 38 0.29
tr|B8A9D5|B8A9D5_ORYSI Putative uncharacterized protein OS=Oryza... 31 0.33
tr|A9ST60|A9ST60_PHYPA Predicted protein OS=Physcomitrella paten... 35 0.34
tr|A3FMG8|A3FMG8_SESRO LysM-domain containing receptor-like kina... 33 0.43
tr|Q69TY6|Q69TY6_ORYSJ Os06g0625300 protein OS=Oryza sativa subs... 37 0.50
tr|A2YF75|A2YF75_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.50
tr|A7PV22|A7PV22_VITVI Chromosome chr4 scaffold_32, whole genome... 37 0.65
tr|B8A0N7|B8A0N7_MAIZE Putative uncharacterized protein OS=Zea m... 30 0.71
tr|B6SWW8|B6SWW8_MAIZE LysM receptor-like kinase OS=Zea mays PE=... 30 0.71
tr|A9TY98|A9TY98_PHYPA Predicted protein OS=Physcomitrella paten... 28 0.92
tr|Q69TY8|Q69TY8_ORYSJ Os06g0625200 protein OS=Oryza sativa subs... 36 1.1
tr|A2YF72|A2YF72_ORYSI Putative uncharacterized protein OS=Oryza... 36 1.1
tr|A7PV20|A7PV20_VITVI Chromosome chr4 scaffold_32, whole genome... 34 1.2
tr|B6SWT1|B6SWT1_MAIZE Protein kinase OS=Zea mays PE=2 SV=1 35 1.4
tr|A7PX72|A7PX72_VITVI Chromosome chr12 scaffold_36, whole genom... 32 1.5

>tr|Q1EP38|Q1EP38_MUSBA Protein kinase family protein OS=Musa
balbisiana GN=MBP_91N22.28 PE=4 SV=1
Length = 328

Score = 38.5 bits (88), Expect(2) = 0.003
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = -3

Query: 462 LWESTNSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
L STNSV+ G +L+ +VDP+L YP C KM +LA +C
Sbjct: 243 LRSSTNSVIMG-------SLRDYVDPSLMNLYPHDCVYKMAMLAKQC 282



Score = 25.4 bits (54), Expect(2) = 0.003
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2

Query: 310 DPVARPSVSYIASILMEIMEASQKWES 230
DP+ RP + + L +I+ +S +WE+
Sbjct: 286 DPILRPDMKQVVISLSQILLSSIEWEA 312


>tr|A9SNC9|A9SNC9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_132645 PE=4 SV=1
Length = 658

Score = 37.0 bits (84), Expect(2) = 0.004
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = -3

Query: 447 NSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
++VL GDD +A+ L+ W+DP L+ YP A+ + +LA C
Sbjct: 577 SNVLSGDDQMAK--LQAWMDPRLQNAYPSDIALSVAILAKSC 616



Score = 26.2 bits (56), Expect(2) = 0.004
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2

Query: 310 DPVARPSVSYIASILMEIMEASQKWE 233
DP +RP + I+ L ++ ASQ+W+
Sbjct: 620 DPRSRPDMKQISFALSKMSSASQEWQ 645


>tr|A7QPK0|A7QPK0_VITVI Chromosome chr18 scaffold_137, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00002969001
PE=4 SV=1
Length = 1238

Score = 37.7 bits (86), Expect(2) = 0.015
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -3

Query: 453 STNSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
S N VLQGD+V ++ L+ ++DP L +YP A M LA C
Sbjct: 605 SINEVLQGDNV--RDKLRGFIDPCLAHEYPFDLAFSMAQLAKSC 646



Score = 23.5 bits (49), Expect(2) = 0.015
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2

Query: 316 SQDPVARPSVSYIASILMEIMEASQKWE 233
+ D ARP++S I IL +I+ +S W+
Sbjct: 648 AHDLNARPTMSDIFVILSKILSSSLDWD 675



Score = 37.0 bits (84), Expect(2) = 0.032
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3

Query: 453 STNSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
S N VL+GDDV + L+ ++DP L YP A M LA C
Sbjct: 1154 SVNEVLEGDDV--RHKLRGFIDPCLTHDYPFDLAFTMAQLAKSC 1195



Score = 23.1 bits (48), Expect(2) = 0.032
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2

Query: 316 SQDPVARPSVSYIASILMEIMEASQKWES 230
+ D ARP++ I IL +I+ +S W+S
Sbjct: 1197 AHDLNARPTMFDILIILSKILSSSLDWDS 1225


>tr|O22808|O22808_ARATH At2g33580 OS=Arabidopsis thaliana
GN=At2g33580/F4P9.35 PE=2 SV=1
Length = 664

Score = 38.9 bits (89), Expect(2) = 0.015
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = -3

Query: 447 NSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRCSILKIRWPDQVSVIL 277
NSVL G++V +E LK ++DP+L +YPL A M LA C + V+ +L
Sbjct: 583 NSVLGGENV--REKLKEFMDPSLGNEYPLELAYTMAQLAKSCVATDLNSRPSVTQVL 637



Score = 22.3 bits (46), Expect(2) = 0.015
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2

Query: 301 ARPSVSYIASILMEIMEASQKWE 233
+RPSV+ + + L I+ +S WE
Sbjct: 629 SRPSVTQVLTTLSMIVSSSIDWE 651


>tr|A5YJW0|A5YJW0_SOYBN LYK11 OS=Glycine max GN=LYK11 PE=4 SV=1
Length = 779

Score = 33.5 bits (75), Expect(2) = 0.043
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3

Query: 426 DVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
D V+ + ++ VDP + YP C KM +LA +C
Sbjct: 542 DTVSMSSTRNLVDPIMMDMYPHDCVYKMAMLAKQC 576



Score = 26.2 bits (56), Expect(2) = 0.043
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2

Query: 313 QDPVARPSVSYIASILMEIMEASQKWES 230
QDPV RP + + L + + +S +WE+
Sbjct: 579 QDPVLRPDMKQVVISLSQTLLSSVEWEA 606


>tr|A9U5R6|A9U5R6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_157257 PE=4 SV=1
Length = 322

Score = 34.7 bits (78), Expect(2) = 0.045
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3

Query: 405 LKHWVDPTLKGQYPLHCAMKMLLLASRC 322
++ W+DP L+ +PL CA+K LA C
Sbjct: 249 IRAWIDPVLRDDFPLDCALKAAKLARSC 276



Score = 25.0 bits (53), Expect(2) = 0.045
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2

Query: 310 DPVA--RPSVSYIASILMEIMEASQKWESR 227
DPVA RP +S ++ L++I +S+ W+ +
Sbjct: 278 DPVANRRPDMSNVSMTLLQIQMSSKIWDDK 307


>tr|Q0E358|Q0E358_ORYSJ Os02g0193000 protein OS=Oryza sativa subsp.
japonica GN=Os02g0193000 PE=4 SV=1
Length = 689

Score = 39.3 bits (90), Expect = 0.10
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3

Query: 462 LWEST-NSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
LWES +++ G A N++ ++DP L G YPL AM + LA+RC
Sbjct: 599 LWESAAEALVDGGGEDAGSNVRAFMDPRLGGDYPLDLAMAVASLAARC 646


>tr|A3A421|A3A421_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_005543 PE=4 SV=1
Length = 620

Score = 39.3 bits (90), Expect = 0.10
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3

Query: 462 LWEST-NSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
LWES +++ G A N++ ++DP L G YPL AM + LA+RC
Sbjct: 530 LWESAAEALVDGGGEDAGSNVRAFMDPRLGGDYPLDLAMAVASLAARC 577


>tr|A2X1X5|A2X1X5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06201 PE=4 SV=1
Length = 689

Score = 39.3 bits (90), Expect = 0.10
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -3

Query: 462 LWEST-NSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
LWES +++ G A N++ ++DP L G YPL AM + LA+RC
Sbjct: 599 LWESAAEALVDGGGEDAGSNVRAFMDPRLGGDYPLDLAMAVASLAARC 646


>tr|A7PV21|A7PV21_VITVI Chromosome chr4 scaffold_32, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025017001
PE=4 SV=1
Length = 617

Score = 31.2 bits (69), Expect(2) = 0.15
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3

Query: 462 LWESTNSVLQGDDVVAQENLKHWVDPTLKGQYPLHCAMKMLLLASRC 322
L E +VL DD +E L ++DP+L G YP A+ M+ L C
Sbjct: 537 LSEVLAAVLHEDD--GKEKLGDFIDPSLDGNYPPELAIFMIRLIDSC 581



Score = 26.6 bits (57), Expect(2) = 0.15
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2

Query: 307 PVARPSVSYIASILMEIMEASQKWES 230
P RP + I L I+ +SQ WES
Sbjct: 586 PAGRPDMDEIVQSLSRILASSQAWES 611