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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916224
Clone id YMU001_000084_G05
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGAATTCGCGGCCGCGAATAGCAATCCTCCAGAAAGGGTTACAGGAGATAATACA
AAAACTCATGACGGCGTTATTGACCTAGAAAACTACATATTATGACTTTCATTATAAAAG
AATAACACCCACCAACCTATTAGTATTTAAACTTTTCTCATTGATAATGAAAACCTCTAG
TATACAACAAAGATGGTCATCAGCACTACAACTGGATTGCAGACAAGCCCATTCTGATGT
ATCTCTTCAACTTACTCAAGGTCAGCTCAACCACCGTGCCACTCCATCCTCTTCGCCAAT
CACTGCTAGAATCTCCACAGCAACATCCAACGAAACGGTACGAAACTTGCTGTTAGTAAG
TCTGCATTCCTGTAAGACAGTACCTTCTAACATCCAACTCTCCCAAACATCAAAGGTATG
ATTAACAA
■■Homology search results ■■ -
sp_hit_id Q5E9X0
Definition sp|Q5E9X0|GFRA2_BOVIN GDNF family receptor alpha-2 OS=Bos taurus
Align length 36
Score (bit) 28.9
E-value 8.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916224|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_G05.
         (403 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5E9X0|GFRA2_BOVIN GDNF family receptor alpha-2 OS=Bos taurus...    29   8.2  

>sp|Q5E9X0|GFRA2_BOVIN GDNF family receptor alpha-2 OS=Bos taurus
           GN=GFRA2 PE=2 SV=1
          Length = 464

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 184 QLDCRQAHSDVSLQLTQGQLNHRATPSSSPITARIS 291
           +L C Q +  + L LT+G+  + A+P   P+TAR+S
Sbjct: 102 ELQCLQIYWSIHLGLTEGEEFYEASP-YEPVTARLS 136
tr_hit_id Q7XAP1
Definition tr|Q7XAP1|Q7XAP1_MARPO C-terminal binding protein OS=Marchantia polymorpha
Align length 54
Score (bit) 95.1
E-value 1.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916224|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_G05.
         (403 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XAP1|Q7XAP1_MARPO C-terminal binding protein OS=Marchantia ...    95   1e-18
tr|Q7XAP0|Q7XAP0_MARPO C-terminal binding protein OS=Marchantia ...    95   1e-18
tr|A9TKR3|A9TKR3_PHYPA Predicted protein OS=Physcomitrella paten...    89   1e-16
tr|A9U1D5|A9U1D5_PHYPA Predicted protein (Fragment) OS=Physcomit...    86   1e-15
tr|B3XZL7|B3XZL7_9CONI Carboxy-terminal binding protein OS=Larix...    82   1e-14
tr|A7PZI9|A7PZI9_VITVI Chromosome chr15 scaffold_40, whole genom...    75   2e-12
tr|Q8S5W4|Q8S5W4_ORYSJ Putative C-terminal binding protein OS=Or...    75   2e-12
tr|Q10SD4|Q10SD4_ORYSJ C-terminal binding protein OS=Oryza sativ...    75   2e-12
tr|Q0DVK1|Q0DVK1_ORYSJ Os03g0126100 protein (Fragment) OS=Oryza ...    75   2e-12
tr|B8AMF2|B8AMF2_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A3ADP2|A3ADP2_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|Q8LN38|Q8LN38_ORYSJ Os10g0533000 protein OS=Oryza sativa subs...    70   5e-11
tr|B8BI01|B8BI01_ORYSI Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|A3C6S4|A3C6S4_ORYSJ Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|B6U1W6|B6U1W6_MAIZE Angustifolia OS=Zea mays PE=2 SV=1              68   3e-10
tr|Q948X7|Q948X7_ARATH C-terminal binding protein OS=Arabidopsis...    65   2e-09
tr|Q93YQ6|Q93YQ6_ARATH Putative uncharacterized protein (Putativ...    65   2e-09
tr|Q7DLS3|Q7DLS3_ARATH DNA, 40 kb surrounding ACS1 locus OS=Arab...    65   2e-09
tr|O23702|O23702_ARATH Dehydrogenase OS=Arabidopsis thaliana GN=...    65   2e-09
tr|O03984|O03984_ARATH Putative dehydrogenase (Fragment) OS=Arab...    65   2e-09
tr|Q84JM5|Q84JM5_IPONI Angustifolia OS=Ipomoea nil GN=IAN PE=2 SV=1    64   4e-09
tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana G...    58   2e-07
tr|A5AX58|A5AX58_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|Q1YFW8|Q1YFW8_MOBAS Putative dihydropteroate synthase OS=Mang...    34   3.2  
tr|Q54WQ7|Q54WQ7_DICDI Putative uncharacterized protein OS=Dicty...    33   5.5  
tr|Q982B9|Q982B9_RHILO Oligopeptide ABC transporter ATP-binding ...    33   7.2  
tr|Q0YIU5|Q0YIU5_9DELT Geobacter sulfurreducens, CxxxxCH...CXXCH...    33   7.2  
tr|Q54AT5|Q54AT5_DICDI Putative uncharacterized protein OS=Dicty...    33   7.2  
tr|A1ZDI6|A1ZDI6_9SPHI Oxidoreductase, 2OG-Fe(II) oxygenase fami...    33   9.1  
tr|Q55CQ2|Q55CQ2_DICDI Putative uncharacterized protein OS=Dicty...    33   9.4  

>tr|Q7XAP1|Q7XAP1_MARPO C-terminal binding protein OS=Marchantia
           polymorpha GN=MpAN PE=4 SV=1
          Length = 688

 Score = 95.1 bits (235), Expect = 1e-18
 Identities = 41/54 (75%), Positives = 49/54 (90%)
 Frame = -3

Query: 401 VNHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWLS 240
           VNHTFDVWESW++EG+ L++C LTNSKFR VSLDV++EILA +GEEDGV RWLS
Sbjct: 635 VNHTFDVWESWIVEGSTLEDCTLTNSKFRGVSLDVSIEILAAVGEEDGVVRWLS 688


>tr|Q7XAP0|Q7XAP0_MARPO C-terminal binding protein OS=Marchantia
           polymorpha GN=MpAN PE=2 SV=1
          Length = 688

 Score = 95.1 bits (235), Expect = 1e-18
 Identities = 41/54 (75%), Positives = 49/54 (90%)
 Frame = -3

Query: 401 VNHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWLS 240
           VNHTFDVWESW++EG+ L++C LTNSKFR VSLDV++EILA +GEEDGV RWLS
Sbjct: 635 VNHTFDVWESWIVEGSTLEDCTLTNSKFRGVSLDVSIEILAAVGEEDGVVRWLS 688


>tr|A9TKR3|A9TKR3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94037 PE=4 SV=1
          Length = 605

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 38/54 (70%), Positives = 47/54 (87%)
 Frame = -3

Query: 401 VNHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWLS 240
           VNHTFDVWESW++EG  L  C LTNS+FR+V+L V++EILA +GEEDG+ARWLS
Sbjct: 552 VNHTFDVWESWIVEGRQLDNCSLTNSRFRSVTLQVSMEILAAVGEEDGIARWLS 605


>tr|A9U1D5|A9U1D5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_30727 PE=4 SV=1
          Length = 622

 Score = 85.5 bits (210), Expect = 1e-15
 Identities = 36/53 (67%), Positives = 46/53 (86%)
 Frame = -3

Query: 401 VNHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWL 243
           VNHTFDVWESW++EG  L  C LTNS+FR+V+L V+++ILA +GEEDG+ARWL
Sbjct: 570 VNHTFDVWESWIVEGRHLDNCSLTNSRFRSVTLQVSMKILAAVGEEDGIARWL 622


>tr|B3XZL7|B3XZL7_9CONI Carboxy-terminal binding protein OS=Larix
           gmelinii GN=LgAN PE=2 SV=1
          Length = 646

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 33/53 (62%), Positives = 46/53 (86%)
 Frame = -3

Query: 398 NHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWLS 240
           +H FD WE+W+LEG+ L+ECRL N++  +V+LDV++EILA +GEEDG+ARWLS
Sbjct: 594 SHNFDAWENWILEGSTLEECRLINTRSPSVALDVSIEILAAVGEEDGIARWLS 646


>tr|A7PZI9|A7PZI9_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026896001
           PE=4 SV=1
          Length = 644

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 35/52 (67%), Positives = 41/52 (78%)
 Frame = -3

Query: 398 NHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWL 243
           +H+FDVWESWMLEG+ L+ECRL N +     LDV VEILA +GEEDGV RWL
Sbjct: 593 SHSFDVWESWMLEGS-LEECRLVNCRNPLAVLDVRVEILAAVGEEDGVTRWL 643


>tr|Q8S5W4|Q8S5W4_ORYSJ Putative C-terminal binding protein OS=Oryza
           sativa subsp. japonica GN=OJ1015F07.3 PE=4 SV=1
          Length = 657

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = -3

Query: 398 NHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWL 243
           +HTFDVWESWMLEG++L+ C+L N +  +  LDV +EILA   EEDGV RWL
Sbjct: 605 SHTFDVWESWMLEGSLLEGCKLINCRNSSAVLDVCIEILAAASEEDGVTRWL 656


>tr|Q10SD4|Q10SD4_ORYSJ C-terminal binding protein OS=Oryza sativa
           subsp. japonica GN=LOC_Os03g03460 PE=2 SV=1
          Length = 424

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = -3

Query: 398 NHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWL 243
           +HTFDVWESWMLEG++L+ C+L N +  +  LDV +EILA   EEDGV RWL
Sbjct: 372 SHTFDVWESWMLEGSLLEGCKLINCRNSSAVLDVCIEILAAASEEDGVTRWL 423


>tr|Q0DVK1|Q0DVK1_ORYSJ Os03g0126100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0126100 PE=4 SV=1
          Length = 439

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = -3

Query: 398 NHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWL 243
           +HTFDVWESWMLEG++L+ C+L N +  +  LDV +EILA   EEDGV RWL
Sbjct: 387 SHTFDVWESWMLEGSLLEGCKLINCRNSSAVLDVCIEILAAASEEDGVTRWL 438


>tr|B8AMF2|B8AMF2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09809 PE=4 SV=1
          Length = 638

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = -3

Query: 398 NHTFDVWESWMLEGTVLQECRLTNSKFRTVSLDVAVEILAVIGEEDGVARWL 243
           +HTFDVWESWMLEG++L+ C+L N +  +  LDV +EILA   EEDGV RWL
Sbjct: 586 SHTFDVWESWMLEGSLLEGCKLINCRNSSAVLDVCIEILAAASEEDGVTRWL 637