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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916225
Clone id YMU001_000084_G06
Library
Length 574
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCTCAGCCTTGCCGTGCCAAACTACATATACTGTTGCCCTTTTTTTTTCCCCACCGGAT
TCATCCTCTTCGCTTTACCAAGGCACACCATATTCTCCACCTTCCCTAGTTGTATCGTCT
CATACAACCACCTGCTGCACCATTTTCTTGCAAGCGCACCCAAATCAGATCTAATTCATT
CAGTAGCTTCTTATTGGTGAGCCCGAACACTTCGCCAGCTGTTTGTTGCTCTCCTACAAG
CACTGCTATTGTTTCAAGGGCCTTGTTCACATGCGTCCAAGCCACAACAGGCCTTGCTCC
ATTCTTCACTGCTACTCGTCCAACGTTCAGCTTCACTGCACATTTACCACCTCCGAGGCT
ACGTACTTGGGGAGAAGGGATTGGCATAGCGCAAGCTATTGAGCTTGCCCCCCTTGCTTT
GCAAAGTGCCTTCATCAATCAATACGTCAAGCTTACTCATCTGCTACTGTTGAGAGCATC
TGTTGAATTTTCCATCATCTGTACCGTACTATGGCAAGAAGGAGTTGCCCATAACTGCTA
GTTGTTCAACCCTCGTGGCCTACAATCTTGCCAC
■■Homology search results ■■ -
sp_hit_id P18538
Definition sp|P18538|VGLB_GAHVR Glycoprotein B OS=Gallid herpesvirus 2 (strain RB-1b)
Align length 68
Score (bit) 32.7
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916225|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_G06.
         (574 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18538|VGLB_GAHVR Glycoprotein B OS=Gallid herpesvirus 2 (str...    33   1.3  
sp|Q0HIF6|CHEB2_SHESM Chemotaxis response regulator protein-glut...    32   2.3  
sp|Q02265|VE4_HPV13 Probable protein E4 OS=Human papillomavirus ...    32   3.0  
sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2         31   3.9  
sp|Q0HVI0|CHEB2_SHESR Chemotaxis response regulator protein-glut...    31   3.9  
sp|Q5M7C3|SP13B_XENLA Histone deacetylase complex subunit SAP130...    31   5.1  

>sp|P18538|VGLB_GAHVR Glycoprotein B OS=Gallid herpesvirus 2 (strain
           RB-1b) GN=GB PE=3 SV=1
          Length = 865

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
 Frame = +2

Query: 230 SPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPR-------LRTWGEGIGI 388
           SP++  + SR + + VQ +   + F+    P  S    L PPR          WGEGI I
Sbjct: 22  SPSTQNVTSREVVSSVQLSEEESTFYLCPPPVGSTVIRLEPPRKCPEPRKATEWGEGIAI 81

Query: 389 AQAIELAP 412
                ++P
Sbjct: 82  LFKENISP 89


>sp|Q0HIF6|CHEB2_SHESM Chemotaxis response regulator
           protein-glutamate methylesterase 2 OS=Shewanella sp.
           (strain MR-4) GN=cheB2 PE=3 SV=1
          Length = 351

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 146 SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTC-VQATTGLAPFFTATRP 322
           S    ++++   +  ++V P+  PA+     +T +V+    T   +A   L   F A  P
Sbjct: 128 SAAHAKLKTQRAAPAVVVQPSHKPALSSRVINTQLVAIGASTGGTEAILSLLQQFPAVMP 187

Query: 323 TFSFTAHLPPPRLRTWGE 376
               T H+PP   RT+ E
Sbjct: 188 PIVITQHMPPGFTRTFAE 205


>sp|Q02265|VE4_HPV13 Probable protein E4 OS=Human papillomavirus
           type 13 GN=E4 PE=3 SV=1
          Length = 118

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +2

Query: 125 QPPAAPFS--CKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLA 298
           Q PAAP    CKR  +  N      L +P T  A+C S T+T          VQ TT   
Sbjct: 48  QCPAAPRKNVCKRRLVNDNEDLHVPLETPRTHKALCVSQTTTP-------WTVQTTTSTL 100

Query: 299 PFFTATRPTFSFTAHL 346
              T T+   + T  L
Sbjct: 101 TITTITKDGTTVTVQL 116


>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
          Length = 5179

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +2

Query: 197  VSPNTSPAVCCSPTSTAIVSRALFTCVQATTGL---APFFTATRPTFSFTAHLPPPRLRT 367
            V+P  +P    +PT+T I +    T     TG     P  T+T P    T   PPP   T
Sbjct: 4161 VTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPESST 4220


>sp|Q0HVI0|CHEB2_SHESR Chemotaxis response regulator
           protein-glutamate methylesterase 2 OS=Shewanella sp.
           (strain MR-7) GN=cheB2 PE=3 SV=1
          Length = 351

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 146 SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTC-VQATTGLAPFFTATRP 322
           S    ++++   +  ++V P+  PA+     +T +V+    T   +A   L   F A  P
Sbjct: 128 SAAHAKLKTQRAAPAVVVQPSHKPALSNRVINTQLVAIGASTGGTEAILSLLQQFPAVMP 187

Query: 323 TFSFTAHLPPPRLRTWGE 376
               T H+PP   RT+ E
Sbjct: 188 PIVITQHMPPGFTRTFAE 205


>sp|Q5M7C3|SP13B_XENLA Histone deacetylase complex subunit SAP130-B
           OS=Xenopus laevis GN=sap130-B PE=2 SV=1
          Length = 1041

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = +2

Query: 233 PTSTAIVSRALFTCVQATTGLAPFFTAT---------RPTFSFTAHLPP 352
           P +T  VS A+   V AT   +P  T T         RPT +F  H PP
Sbjct: 245 PVTTTSVSPAVVATVSATRAQSPVITTTPAHAAEPVLRPTLAFQQHPPP 293
tr_hit_id B4L481
Definition tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis
Align length 69
Score (bit) 40.0
E-value 0.091
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916225|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_G06.
         (574 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis GN=GI156...    40   0.091
tr|B6KYB4|B6KYB4_BRAFL Putative uncharacterized protein OS=Branc...    36   1.3  
tr|Q4S628|Q4S628_TETNG Chromosome 9 SCAF14729, whole genome shot...    35   2.3  
tr|B4JNT3|B4JNT3_DROGR GH24882 (Fragment) OS=Drosophila grimshaw...    35   2.3  
tr|Q2IA52|Q2IA52_KARMI Chloroplast mRNA binding protein csp41 OS...    34   5.0  
tr|A4I578|A4I578_LEIIN Putative uncharacterized protein OS=Leish...    34   5.0  
tr|Q62I80|Q62I80_BURMA Putative uncharacterized protein OS=Burkh...    34   6.5  
tr|Q3JPF4|Q3JPF4_BURP1 Membrane protein, putative OS=Burkholderi...    34   6.5  
tr|A4XD18|A4XD18_SALTO LPXTG-motif cell wall anchor domain OS=Sa...    34   6.5  
tr|B7GD26|B7GD26_PHATR Predicted protein OS=Phaeodactylum tricor...    34   6.5  
tr|Q7QFG1|Q7QFG1_ANOGA AGAP000468-PA (Fragment) OS=Anopheles gam...    33   8.6  
tr|B6M8V1|B6M8V1_BRAFL Putative uncharacterized protein OS=Branc...    33   8.6  
tr|Q6UG74|Q6UG74_SSV2 ORF 82b OS=Sulfolobus virus-like particle ...    33   8.6  

>tr|B4L481|B4L481_DROMO GI15699 OS=Drosophila mojavensis GN=GI15699
            PE=4 SV=1
          Length = 2164

 Score = 40.0 bits (92), Expect = 0.091
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +2

Query: 230  SPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPRLRTWGEGIGIAQAIELA 409
            SP +T+  + A+     ATT      T T  T S T  LP  RL  WG+ +G+      A
Sbjct: 1948 SPAATSATTAAITATAAATTAATTTATTTASTSSTTGTLPKDRLEEWGKPLGLPSP---A 2004

Query: 410  PLALQSAFI 436
            PL ++ A I
Sbjct: 2005 PLPVEGADI 2013


>tr|B6KYB4|B6KYB4_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_117208 PE=4 SV=1
          Length = 2419

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 146  SCKRTQIRSNSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTAT-RP 322
            S   T + S++ SS +    +TS A   S T+T   +    T  +ATT   P   AT RP
Sbjct: 1191 SSSTTPLSSSASSSTM----STSSASSSSSTTTTKATTTTSTKAEATTSTQPLVLATSRP 1246

Query: 323  TFSFTAHLPPPRLRT 367
            T   + HLPP R  T
Sbjct: 1247 TTVTSTHLPPTRSPT 1261


>tr|Q4S628|Q4S628_TETNG Chromosome 9 SCAF14729, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00023477001 PE=4 SV=1
          Length = 412

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +2

Query: 206 NTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPRLRTWGEGIG 385
           +TSP+   +PTST+  SR   + V  TT + P  T+T    + T   P P  +       
Sbjct: 208 STSPSTAATPTSTSAASRVSSSQV-PTTPITPSATSTASPTATTPSTPAPSSQAAAAAAS 266

Query: 386 IAQAIELAPLALQSAFIN-----QYVKLTHLL 466
            AQ I+L  L    A +N     Q V LT +L
Sbjct: 267 PAQPIQLRDLQSILATMNVPSSGQGVDLTSVL 298


>tr|B4JNT3|B4JNT3_DROGR GH24882 (Fragment) OS=Drosophila grimshawi
            GN=GH24882 PE=4 SV=1
          Length = 6469

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +2

Query: 173  NSFSSFLLVSPNTSPAVCCSPTSTAIVSRALFTCVQ------ATTGLAPFFTATRPTFSF 334
            N  +SF+  SP +S  V  + T+T I S A  T         ATT      T +  T S 
Sbjct: 6229 NLLASFISSSPASS-TVPTTLTATTIASAATVTATATATDATATTATTATTTTSGSTSST 6287

Query: 335  TAHLPPPRLRTWGEGIGIAQAIELAPLALQSAFI 436
            +  LP  RL  WG+ +G+      APL ++   I
Sbjct: 6288 SGTLPKDRLEEWGKPLGLPSP---APLPVEGGDI 6318


>tr|Q2IA52|Q2IA52_KARMI Chloroplast mRNA binding protein csp41
           OS=Karlodinium micrum PE=2 SV=1
          Length = 428

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 333 KLNVGR-VAVKNGARPVVAWTHVNKALETIAVLVGEQQTAGEVFGLTNKKLLNELDLI 163
           +L  GR V V NG    V  TH       IA  VG +  AGEVF      L+   DL+
Sbjct: 286 RLTNGRPVLVPNGGDQQVTMTHAADNAAMIAAAVGNEAAAGEVFNCATSTLITYDDLV 343


>tr|A4I578|A4I578_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ30.0830 PE=4 SV=1
          Length = 487

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 194 LVSPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPP 355
           L SP++SPA   +P +T ++     + +  T+   P   A  PT +   H PPP
Sbjct: 152 LASPSSSPATLNAPYTTPVIPPRASSTLTTTSPSLPLLPAPPPTPAGLPHSPPP 205


>tr|Q62I80|Q62I80_BURMA Putative uncharacterized protein
           OS=Burkholderia mallei GN=BMA2003 PE=4 SV=1
          Length = 509

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
 Frame = +2

Query: 200 SPNTSPAVCCS--PTSTAIVSRALFTC-VQATTGLAPFFTATRPTFSFTAHLPPPRLRTW 370
           +P T P       P + AIV  ALF   V A  GLA    ATRP  +  A   P   R  
Sbjct: 140 APATPPIAAAGLVPATVAIVLAALFAALVSAPAGLATGSAATRPPIA-PATGVPFAARAS 198

Query: 371 GEGIGIAQAIELAPLALQSAFINQYVKLTHLLLLRASVEFSIICTVLW 514
                 A A+  A LA +SAF      L   ++    + F+ + T L+
Sbjct: 199 VPATVFAAAVSAAGLATESAFARPLATLVMGVIGLLPIAFASVPTTLF 246


>tr|Q3JPF4|Q3JPF4_BURP1 Membrane protein, putative OS=Burkholderia
           pseudomallei (strain 1710b) GN=BURPS1710b_3177 PE=4 SV=1
          Length = 914

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
 Frame = +2

Query: 200 SPNTSPAVCCS--PTSTAIVSRALFTC-VQATTGLAPFFTATRPTFSFTAHLPPPRLRTW 370
           +P T P       P + AIV  ALF   V A  GLA    ATRP  +  A   P   R  
Sbjct: 265 APATPPIAAAGLVPATVAIVLAALFAALVSAPAGLATGSAATRPPIA-PATGVPFAARAS 323

Query: 371 GEGIGIAQAIELAPLALQSAFINQYVKLTHLLLLRASVEFSIICTVLW 514
                 A A+  A LA +SAF      L   ++    + F+ + T L+
Sbjct: 324 VPATVFAAAVSAAGLATESAFARPLATLVMGVIGLLPIAFASVPTTLF 371


>tr|A4XD18|A4XD18_SALTO LPXTG-motif cell wall anchor domain
           OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818
           / CNB-440) GN=Strop_4397 PE=4 SV=1
          Length = 493

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 31/90 (34%), Positives = 34/90 (37%)
 Frame = +2

Query: 200 SPNTSPAVCCSPTSTAIVSRALFTCVQATTGLAPFFTATRPTFSFTAHLPPPRLRTWGEG 379
           SP TSP    SPT TA VS        + TG  P  T + P  S     P P   +    
Sbjct: 406 SPTTSPTATGSPTPTATVSP-----TPSATGTVPSETPSAPPTSSAPVTPTPTTPS---- 456

Query: 380 IGIAQAIELAPLALQSAFINQYVKLTHLLL 469
                   L  L    A I  YV LT LLL
Sbjct: 457 --------LGGLPTTGAAITSYVLLTVLLL 478


>tr|B7GD26|B7GD26_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_50133 PE=4 SV=1
          Length = 629

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = +2

Query: 113 YRLIQPPAAPFSCKRTQIR----SNSFSSFLLVSPNTSPAVCCSPTST--AIVSRALFTC 274
           Y+L  PP  P++C+R   R        ++   V P  SP+   S  S+  ++VS     C
Sbjct: 121 YKLHLPPPLPWTCRRRANRLRQEQEQQAAIAKVLPEPSPSDQDSSVSSRESLVSHTSVEC 180

Query: 275 VQATTGLAPFFTATR--PTFSFTAHLPP 352
            QA T      T T    T S T+H  P
Sbjct: 181 AQAETSTTTLTTTTSTITTSSSTSHTTP 208