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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916232
Clone id YMU001_000084_H04
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATTCGCGGCCGCGAATTCGCCCATAAATCTAGACGAAGGTAAGGGCGGCGCTGCTTCCA
TTGTTGGTAGTCTCTCACAATACCTTCTCAAGGGTTGCACACCTTGGCATGAAGCCCCTT
CTTGCCCTGACTATGTTGGCCCTGTTGAGGTTGCTTGCACCCCCGATGGCTGCGGACGTG
GCCTCTTTGCAACACAAGATGTGCACGCAGGTACCCTTCTCCTCATCAGGAAGCCCATGG
CCATCTCCTACGATGATCCCCACCGCATCATGCTGCTCTCCAAACTGGTCACAATGGCAG
CAAAAGACCCTCTTTTCCTCAGGAAACTGCACTCTTTGGCTCACACCCAGAGCTCTCAAC
ATCGGTTAGAGGTGCCCTC
■■Homology search results ■■ -
sp_hit_id Q00VK4
Definition sp|Q00VK4|RL37A_OSTTA 60S ribosomal protein L37a OS=Ostreococcus tauri
Align length 75
Score (bit) 32.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916232|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H04.
         (356 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00VK4|RL37A_OSTTA 60S ribosomal protein L37a OS=Ostreococcus...    32   1.0  
sp|P52463|UL32_HHV6U Probable major envelope glycoprotein U36 OS...    31   2.2  
sp|Q2H9L1|DOT1_CHAGB Histone-lysine N-methyltransferase, H3 lysi...    30   3.8  
sp|Q9C0G0|ZN407_HUMAN Zinc finger protein 407 OS=Homo sapiens GN...    30   5.0  
sp|Q3TYX3|SMYD5_MOUSE SET and MYND domain-containing protein 5 O...    29   6.5  
sp|Q9NQ87|HEYL_HUMAN Hairy/enhancer-of-split related with YRPW m...    29   6.5  
sp|Q2NL18|HEYL_BOVIN Hairy/enhancer-of-split related with YRPW m...    29   6.5  
sp|Q13XD0|RNH2_BURXL Ribonuclease HII OS=Burkholderia xenovorans...    29   8.5  
sp|A9NEC4|MNMG_ACHLI tRNA uridine 5-carboxymethylaminomethyl mod...    29   8.5  
sp|O70394|I27RA_MOUSE Interleukin-27 receptor subunit alpha OS=M...    29   8.5  
sp|Q7Z407|CSMD3_HUMAN CUB and sushi domain-containing protein 3 ...    29   8.5  
sp|Q8XWW2|CAPP_RALSO Phosphoenolpyruvate carboxylase OS=Ralstoni...    29   8.5  

>sp|Q00VK4|RL37A_OSTTA 60S ribosomal protein L37a OS=Ostreococcus
           tauri GN=RPL37a PE=3 SV=2
          Length = 92

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 19/75 (25%), Positives = 28/75 (37%)
 Frame = -3

Query: 321 VSQRVQFPEEKRVFCCHCDQFGEQHDAVGIIVGDGHGLPDEEKGTCVHILCCKEATSAAI 142
           V ++ +  +  + FC  C ++G +  AVG                   I CCK       
Sbjct: 25  VVKKTEVSQHSKFFCDFCGKYGMKRQAVG-------------------IWCCKGCNKTKA 65

Query: 141 GGASNLNRANIVRAR 97
           GGA +LN    V  R
Sbjct: 66  GGAYSLNTGGSVTVR 80


>sp|P52463|UL32_HHV6U Probable major envelope glycoprotein U36
           OS=Human herpesvirus 6A (strain Uganda-1102) GN=U36 PE=3
           SV=1
          Length = 484

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +1

Query: 175 DVHAGTLLLIRKPMAISYDDPHRIMLLSKLVTMAAKDPLFLRKLH 309
           ++ AG +LL + P +I+ +    + LL +L+  + +D LFL+ LH
Sbjct: 262 ELTAGPILLAQIPFSITKNKTTSVCLLCELMAASKQDYLFLKYLH 306


>sp|Q2H9L1|DOT1_CHAGB Histone-lysine N-methyltransferase, H3
           lysine-79 specific OS=Chaetomium globosum GN=DOT1 PE=3
           SV=1
          Length = 510

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 197 RRVPACTSCVAKRPRPQP-SGVQATSTGPT*SGQEGAS 87
           R  P  +S   KRPRP+P +G  + +TGP+ S    AS
Sbjct: 48  RASPTPSSLQVKRPRPRPGAGAASPATGPSLSSSTSAS 85


>sp|Q9C0G0|ZN407_HUMAN Zinc finger protein 407 OS=Homo sapiens
           GN=ZNF407 PE=2 SV=2
          Length = 2248

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
 Frame = -3

Query: 354 GHL*PMLRALGVSQRVQFPEEKRVFCCHCDQFGEQHDAVGIIVGDGHGLPDEEKGTCVHI 175
           GHL      L         + K   CCHC    E   A+ + +   HG            
Sbjct: 192 GHLFSSCSDLEKHAESHMQQPKEHTCCHCSHKAESSSALHMHIKQAHGPQKVFSCDLCGF 251

Query: 174 LCCKE-ATSAAIGGASNLNRANIVRARRGFM 85
            C +E   +A   G ++L R N+  AR GF+
Sbjct: 252 QCSEENLLNAHYLGKTHLRRQNLA-ARGGFV 281


>sp|Q3TYX3|SMYD5_MOUSE SET and MYND domain-containing protein 5
           OS=Mus musculus GN=Smyd5 PE=2 SV=2
          Length = 416

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 115 GPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPM 216
           G VEV       G+GLFATQ +  G  + I +P+
Sbjct: 21  GSVEVRYVDSIKGKGLFATQLIRKGETIFIERPL 54


>sp|Q9NQ87|HEYL_HUMAN Hairy/enhancer-of-split related with YRPW
           motif-like protein OS=Homo sapiens GN=HEYL PE=2 SV=2
          Length = 328

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -1

Query: 164 KRPRPQPSGVQATSTGPT*SGQEGASCQGVQPL 66
           KRP+ +PSG    S GP   GQEG   Q  +PL
Sbjct: 2   KRPK-EPSGSDGESDGPIDVGQEGQLSQMARPL 33


>sp|Q2NL18|HEYL_BOVIN Hairy/enhancer-of-split related with YRPW
           motif-like protein OS=Bos taurus GN=HEYL PE=2 SV=3
          Length = 328

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 164 KRPRPQPSGVQATSTGPT*SGQEGASCQGVQPL 66
           KRPR +PSG  + S GP   G+EG   Q  +PL
Sbjct: 2   KRPR-EPSGSDSESDGPIDVGREGELSQMARPL 33


>sp|Q13XD0|RNH2_BURXL Ribonuclease HII OS=Burkholderia xenovorans
           (strain LB400) GN=rnhB PE=3 SV=1
          Length = 248

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +1

Query: 118 PVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAISYDDPHRIMLLSKLVTMAAKDPLF 294
           P ++ C  D  GRG  A   V A  +    KPM    DD       SK++T   +D L+
Sbjct: 27  PDDIVCGVDEAGRGPLAGPVVAAAVIFDPAKPMIRGLDD-------SKVLTAKKRDELY 78


>sp|A9NEC4|MNMG_ACHLI tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme mnmG OS=Acholeplasma laidlawii
           (strain PG-8A) GN=mnmG PE=3 SV=1
          Length = 617

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +1

Query: 142 DGCGRGLFATQDVHAGTLLLIRKPMAISYDDPHRIMLLSKLVTMAAKDPLFLRKLHSLAH 321
           +  G+GL A   ++AG  +  +KP+ +  D+ +  +L+  L+T    +P  L        
Sbjct: 375 EAAGQGLMA--GINAGLKVQGKKPLVLKRDEAYIGVLIDDLITKGTSEPYRLL------- 425

Query: 322 TQSSQHRL 345
           T  ++HRL
Sbjct: 426 TSRAEHRL 433


>sp|O70394|I27RA_MOUSE Interleukin-27 receptor subunit alpha OS=Mus
           musculus GN=Il27ra PE=2 SV=1
          Length = 623

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/54 (25%), Positives = 19/54 (35%)
 Frame = +2

Query: 179 CTQVXXXXXXXXXXXXTMIPTASCCSPNWSQWQQKTLFSSGNCTLWLTPRALNI 340
           C QV            T      CC      W +  + S GN T W+ P  L++
Sbjct: 255 CVQVTYTVWFGAGDITTTQEEVPCCKSPVPAWMEWAVVSPGNSTSWVPPTNLSL 308
tr_hit_id A9U604
Definition tr|A9U604|A9U604_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 53.9
E-value 4.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916232|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H04.
         (356 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U604|A9U604_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|A9TID7|A9TID7_PHYPA Predicted protein OS=Physcomitrella paten...    53   9e-06
tr|B4F9T1|B4F9T1_MAIZE Putative uncharacterized protein OS=Zea m...    49   1e-04
tr|A8JCM2|A8JCM2_CHLRE Histone methyltransferase OS=Chlamydomona...    48   3e-04
tr|A8I6N2|A8I6N2_CHLRE Histone methyltransferase OS=Chlamydomona...    43   0.007
tr|A5BCK6|A5BCK6_VITVI Putative uncharacterized protein OS=Vitis...    41   0.027
tr|A8PRY1|A8PRY1_MALGO Putative uncharacterized protein OS=Malas...    41   0.035
tr|A9SV99|A9SV99_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.045
tr|A8I6N8|A8I6N8_CHLRE Predicted protein (Fragment) OS=Chlamydom...    40   0.045
tr|A8I6N5|A8I6N5_CHLRE Predicted protein (Fragment) OS=Chlamydom...    40   0.059
tr|A7QUQ3|A7QUQ3_VITVI Chromosome chr10 scaffold_179, whole geno...    40   0.059
tr|Q9LQX6|Q9LQX6_ARATH T24P13.14 OS=Arabidopsis thaliana PE=4 SV=1     39   0.13 
tr|Q5NRN1|Q5NRN1_SOLDE TPR domain containing protein, putative O...    39   0.13 
tr|B7FQW4|B7FQW4_PHATR Predicted protein OS=Phaeodactylum tricor...    38   0.22 
tr|A8JBK7|A8JBK7_CHLRE Predicted protein OS=Chlamydomonas reinha...    38   0.22 
tr|Q5AY01|Q5AY01_EMENI Putative uncharacterized protein OS=Emeri...    38   0.22 
tr|Q6F2D2|Q6F2D2_SOLDE Putative TPR domain containing protein, i...    38   0.29 
tr|B8C5D6|B8C5D6_THAPS Predicted protein OS=Thalassiosira pseudo...    38   0.29 
tr|Q60D23|Q60D23_SOLDE TPR domain containing protein, putative O...    37   0.65 
tr|A8P160|A8P160_COPC7 Predicted protein OS=Coprinopsis cinerea ...    37   0.65 
tr|A4S4E3|A4S4E3_OSTLU Predicted protein OS=Ostreococcus lucimar...    36   0.85 
tr|Q4PDE6|Q4PDE6_USTMA Putative uncharacterized protein OS=Ustil...    36   0.85 
tr|B5HB10|B5HB10_STRPR Predicted protein OS=Streptomyces pristin...    35   1.5  
tr|A6SFP6|A6SFP6_BOTFB Putative uncharacterized protein OS=Botry...    35   2.5  
tr|A3P9M8|A3P9M8_BURP0 Putative uncharacterized protein OS=Burkh...    34   3.2  
tr|A3NP56|A3NP56_BURP6 Putative uncharacterized protein OS=Burkh...    34   3.2  
tr|B7CWA0|B7CWA0_BURPS Putative uncharacterized protein OS=Burkh...    34   3.2  
tr|B3XXH5|B3XXH5_9BACT Putative peptidase OS=uncultured bacteriu...    34   3.2  
tr|B8PN41|B8PN41_9APHY Predicted protein OS=Postia placenta Mad-...    34   3.2  
tr|A7EHL5|A7EHL5_SCLS1 Putative uncharacterized protein OS=Scler...    34   3.2  

>tr|A9U604|A9U604_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_173749 PE=4 SV=1
          Length = 1117

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 29/57 (50%), Positives = 35/57 (61%)
 Frame = +1

Query: 49  LSQYLLKGCTPWHEAPSCPDYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMA 219
           LS Y LKG     E+P C DY+GPV +     G GRGL  T+DV AG LLL+  P+A
Sbjct: 719 LSHYYLKGKQAG-ESPFCADYIGPVIITDVGRGRGRGLVLTKDVEAGELLLVSNPIA 774


>tr|A9TID7|A9TID7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170248 PE=4 SV=1
          Length = 1301

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 28/57 (49%), Positives = 35/57 (61%)
 Frame = +1

Query: 49  LSQYLLKGCTPWHEAPSCPDYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMA 219
           L+ Y LKG     E+P C DY+GPV +     G GRGL  T+DV AG LLL+  P+A
Sbjct: 795 LAHYYLKGRQAG-ESPFCADYIGPVIITDVGRGRGRGLVLTKDVEAGELLLVSNPIA 850


>tr|B4F9T1|B4F9T1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 544

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
 Frame = +1

Query: 49  LSQYLLKGCTPWHEAPSCPDYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAI-- 222
           LS+++L G +   + P   +YVG VEV  +P G GRG+FA ++V AGT L+I K +AI  
Sbjct: 149 LSEWVLAGFSG--KFPDLAEYVGCVEVRRSPHG-GRGVFAVKNVEAGTTLIIAKAVAIGR 205

Query: 223 ------SYDDPHRIM---LLSKLVTMAAKDPLFLRKLHSLAHTQSSQHRLEVP 354
                 S  D    +    + K++  A K P     +++L+  Q  Q  L VP
Sbjct: 206 GVIPDASGSDEKMFVWKDFVGKVLEAAEKCPKTAALIYTLSTGQERQDELAVP 258


>tr|A8JCM2|A8JCM2_CHLRE Histone methyltransferase OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_178280 PE=4 SV=1
          Length = 711

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 32/91 (35%), Positives = 47/91 (51%)
 Frame = +1

Query: 19  KGGAASIVGSLSQYLLKGCTPWHEAPSCPDYVGPVEVACTPDGCGRGLFATQDVHAGTLL 198
           +G A S V + +Q           A      VGPV +A   DG GRGL A++ V  G LL
Sbjct: 125 RGSAPSAVAAAAQAAADALFTDPGAGPLAPQVGPVAIADLGDGRGRGLVASRTVQPGELL 184

Query: 199 LIRKPMAISYDDPHRIMLLSKLVTMAAKDPL 291
           L  +P+A+++DD      L+ L +  A+DP+
Sbjct: 185 LAVRPLALAWDDG-----LAALGSSLAQDPV 210


>tr|A8I6N2|A8I6N2_CHLRE Histone methyltransferase OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_142738 PE=4 SV=1
          Length = 953

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +1

Query: 106 DYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAISY 228
           D++GPV+VA   +G GRGL+ T  V AG LLL  +  A+ Y
Sbjct: 431 DFIGPVQVADAGEGRGRGLYTTAPVRAGQLLLAMRADAVCY 471


>tr|A5BCK6|A5BCK6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_025097 PE=4 SV=1
          Length = 588

 Score = 41.2 bits (95), Expect = 0.027
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
 Frame = +1

Query: 94  PSCPDYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAI-----------SYDDPH 240
           P   +Y+G V++  + +  GRGLFAT++V AGTL+L+ K +A            S D+  
Sbjct: 227 PELAEYIGAVQIMKS-EISGRGLFATKNVDAGTLVLVTKAIATERCILPEQNDDSADNIQ 285

Query: 241 RIM---LLSKLVTMAAKDPLFLRKLHSLAHTQSS---QHRLEVP 354
            +M    + K+V  A+K     ++LH L    SS   +  LEVP
Sbjct: 286 LVMWKNFIDKVVESASK----CKRLHHLISVLSSGEXEDVLEVP 325


>tr|A8PRY1|A8PRY1_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_0153 PE=4 SV=1
          Length = 880

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 23/41 (56%), Positives = 26/41 (63%)
 Frame = +1

Query: 106 DYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAISY 228
           +YVGPV VA  P G GRGL  T+DV  G LLL  + M  SY
Sbjct: 443 EYVGPVCVADIP-GAGRGLVLTRDVEEGELLLFCRAMGSSY 482


>tr|A9SV99|A9SV99_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84447 PE=4 SV=1
          Length = 691

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 24/60 (40%), Positives = 34/60 (56%)
 Frame = +1

Query: 46  SLSQYLLKGCTPWHEAPSCPDYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAIS 225
           SL +Y L G       P   D++G V++    DG GRGL  + +V AG +LLI  P+AI+
Sbjct: 242 SLEEYCLSGGRML--PPLVEDFIGSVKINRVGDGRGRGLVLSSNVAAGDVLLICNPIAIA 299


>tr|A8I6N8|A8I6N8_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_142740 PE=4
           SV=1
          Length = 486

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = +1

Query: 106 DYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAISYD 231
           D++GPV+VA   +G GR L  +Q V AG LLL  +  A+ YD
Sbjct: 173 DFIGPVQVADAGEGRGRILVTSQPVRAGQLLLAMRADALCYD 214


>tr|A8I6N5|A8I6N5_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_142739 PE=4
           SV=1
          Length = 504

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +1

Query: 106 DYVGPVEVACTPDGCGRGLFATQDVHAGTLLLIRKPMAISY 228
           D++GPV+VA   +G GRGL+ T  V AG LLL  +    S+
Sbjct: 248 DFIGPVQVADAGEGRGRGLYMTAPVRAGQLLLAMRADVASF 288