BP916234 |
Clone id |
YMU001_000084_H06 |
Library |
YMU01 |
Length |
512 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000084_H06. |
Accession |
BP916234 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AAATTGTTGTTCTTTAGCCACAGTTTTCATACAGAGAGGACCATACAATAACGGCCACTA CATCAAATATCTGTTAGATTTGTGTGGCCAACGTGGAAAGTATCAAAGAGTGTGGACGTA AATAGAAGACTACCTGCCACCTTGCATGCCTTTTGACAATGTAGTTATATCGGCCTTGGT CAGATTGGAAGATAAGAGGCTGCAAAAATCCCAGTGGGCCTTCCAGATATCTCTGCAATG CCTTCCTTGCTTCAGAAATACACGAACTGGTTCGTCTCTTTGGACATTGAGTATAGTAAG GTGAGGTGAGCTTCTCAAATGTCAGGTCCTCCTTCAATACAGATGGATGCAAGCCCAGGT CTAAAAGTCGTTGACCGTTCATTGCAAAACATCAAGAAAATTCCGCCTTGCCTATTCCAA GTTGTATCGACCCATTGCCGCTGTCGTGCAGACGCAAGTTCAGCTGCATCACAAAAGGCA ATAGCTGCAGAGACTTTGCTCCCACGAGGGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5VN19 |
Definition |
sp|Q5VN19|MPK11_ORYSJ Mitogen-activated protein kinase 11 OS=Oryza sativa subsp. japonica |
Align length |
57 |
Score (bit) |
31.2 |
E-value |
2.8 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RGC6 |
Definition |
tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
63 |
Score (bit) |
58.2 |
E-value |
2.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916234|Adiantum capillus-veneris mRNA, clone: YMU001_000084_H06. (497 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella paten... 58 2e-07 tr|Q4PL84|Q4PL84_ARATH Putative uncharacterized protein OS=Arabi... 45 0.001 tr|Q4PL83|Q4PL83_ARATH Putative uncharacterized protein OS=Arabi... 45 0.001 tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genom... 40 0.047 tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis... 40 0.047 tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1 ... 37 0.40 tr|B7PJL4|B7PJL4_IXOSC Nuclear transcription factor, X-box bindi... 36 0.88 tr|Q2UCQ8|Q2UCQ8_ASPOR Putative u4/u6 small nuclear ribonucleopr... 35 1.5 tr|B8N4P5|B8N4P5_ASPFL U4/U6 small nuclear ribonucleoprotein, pu... 33 7.5
>tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65760 PE=4 SV=1 Length = 1055
Score = 58.2 bits (139), Expect = 2e-07 Identities = 30/63 (47%), Positives = 37/63 (58%) Frame = -1
Query: 491 RGSKVSAAIAFCDAAELASARQRQWVDTTWNRQGGIFLMFCNERSTTFRPGLASICIEGG 312 RGSK S AI C+ A L R RQ D W+ IFL+ N+ S+ +RP LASI IE G Sbjct: 992 RGSKSSLAIGVCEVAALGVLRARQMADKRWSSSSDIFLLARNKCSSMYRPALASIVIETG 1051
Query: 311 PDI 303 D+ Sbjct: 1052 DDL 1054
>tr|Q4PL84|Q4PL84_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana GN=At2g47290 PE=2 SV=1 Length = 826
Score = 45.4 bits (106), Expect = 0.001 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = -1
Query: 491 RGSKVSAAIAFCDAAELASARQRQWVD-TTWNRQGGIFLMFCNERSTTFRPGLASICIE 318 RGSK AA AFCDA L R QW D R+ I+++ N RS+ FR LA+I +E Sbjct: 758 RGSKKPAAEAFCDAVLLGRLRDEQWRDKDVRRRKKQIYVLVRNLRSSAFRLALATIVLE 816
>tr|Q4PL83|Q4PL83_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana GN=At2g47290 PE=2 SV=1 Length = 659
Score = 45.4 bits (106), Expect = 0.001 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = -1
Query: 491 RGSKVSAAIAFCDAAELASARQRQWVD-TTWNRQGGIFLMFCNERSTTFRPGLASICIE 318 RGSK AA AFCDA L R QW D R+ I+++ N RS+ FR LA+I +E Sbjct: 591 RGSKKPAAEAFCDAVLLGRLRDEQWRDKDVRRRKKQIYVLVRNLRSSAFRLALATIVLE 649
>tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018608001 PE=4 SV=1 Length = 806
Score = 40.4 bits (93), Expect = 0.047 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = -1
Query: 491 RGSKVSAAIAFCDAAELASARQRQWVDTTW-NRQGGIFLMFCNERSTTFRPGLASICIE 318 RGSK A A C+A LA R+ QW + R+ I+++ N RST +R LA+I +E Sbjct: 739 RGSKKLKAEALCEAILLARLREEQWNEMPMKERRKEIYVLVRNLRSTAYRLALATIILE 797
>tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012793 PE=4 SV=1 Length = 743
Score = 40.4 bits (93), Expect = 0.047 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = -1
Query: 491 RGSKVSAAIAFCDAAELASARQRQWVDTTW-NRQGGIFLMFCNERSTTFRPGLASICIE 318 RGSK A A C+A LA R+ QW + R+ I+++ N RST +R LA+I +E Sbjct: 676 RGSKKLKAEALCEAILLARLREEQWNEMPMKERRKEIYVLVRNLRSTAYRLALATIILE 734
>tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1 containing protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g45250 PE=4 SV=1 Length = 856
Score = 37.4 bits (85), Expect = 0.40 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -1
Query: 476 SAAIAFCDAAELASARQRQWVDTTWNRQGGIFLMFCNERSTTFRPGLASICIEGGPD 306 + A+AFC+A LA R++QW ++ I ++ N RS +R LA+I +E D Sbjct: 795 AVAVAFCEAKLLAVLRRQQWRTHESLKRKDICVLVRNARSAAYRRALATIVLEQQED 851
>tr|B7PJL4|B7PJL4_IXOSC Nuclear transcription factor, X-box binding protein, putative OS=Ixodes scapularis GN=IscW_ISCW018164 PE=4 SV=1 Length = 855
Score = 36.2 bits (82), Expect = 0.88 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = +3
Query: 339 PRSKSR*PFIAKHQENSALPIPSCIDPLPLSCRRKFSCITKGNSCRDFAP 488 PR+ P +A E A P P C +PLPL+CR + S T +C D P Sbjct: 588 PRAGPWEPIVAPRLEVVAQPCPPCKEPLPLACRGRHSVDT--FACSDLRP 635
>tr|Q2UCQ8|Q2UCQ8_ASPOR Putative u4/u6 small nuclear ribonucleoprotein OS=Aspergillus oryzae GN=AO090012000487 PE=4 SV=1 Length = 502
Score = 35.4 bits (80), Expect = 1.5 Identities = 22/66 (33%), Positives = 31/66 (46%) Frame = -2
Query: 427 SGNGSIQLGIGKAEFS*CFAMNGQRLLDLGLHPSVLKEDLTFEKLTSPYYTQCPKRRTSS 248 S NGS G G + G+ LD+GLHP++L + + F TQ RRT S Sbjct: 27 SNNGSPLPGQGAPASEDDGSSKGRGGLDVGLHPALLSDTVEFRGAKGRQSTQSKNRRTES 86
Query: 247 CISEAR 230 ++ R Sbjct: 87 PVTSGR 92
>tr|B8N4P5|B8N4P5_ASPFL U4/U6 small nuclear ribonucleoprotein, putative OS=Aspergillus flavus NRRL3357 GN=AFLA_017540 PE=4 SV=1 Length = 589
Score = 33.1 bits (74), Expect = 7.5 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -2
Query: 361 GQRLLDLGLHPSVLKEDLTFEKLTSPYYTQCPKRRTSSCISEAR 230 G+ LD+GLHP++L + + F TQ RRT S ++ R Sbjct: 136 GRGGLDVGLHPALLSDTVEFRGAKGRQSTQSKNRRTESPVTSGR 179
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