BP916234
Clone id YMU001_000084_H06
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAATTGTTGTTCTTTAGCCACAGTTTTCATACAGAGAGGACCATACAATAACGGCCACTA
CATCAAATATCTGTTAGATTTGTGTGGCCAACGTGGAAAGTATCAAAGAGTGTGGACGTA
AATAGAAGACTACCTGCCACCTTGCATGCCTTTTGACAATGTAGTTATATCGGCCTTGGT
CAGATTGGAAGATAAGAGGCTGCAAAAATCCCAGTGGGCCTTCCAGATATCTCTGCAATG
CCTTCCTTGCTTCAGAAATACACGAACTGGTTCGTCTCTTTGGACATTGAGTATAGTAAG
GTGAGGTGAGCTTCTCAAATGTCAGGTCCTCCTTCAATACAGATGGATGCAAGCCCAGGT
CTAAAAGTCGTTGACCGTTCATTGCAAAACATCAAGAAAATTCCGCCTTGCCTATTCCAA
GTTGTATCGACCCATTGCCGCTGTCGTGCAGACGCAAGTTCAGCTGCATCACAAAAGGCA
ATAGCTGCAGAGACTTTGCTCCCACGAGGGGC
■■Homology search results ■■ -
sp_hit_id Q5VN19
Definition sp|Q5VN19|MPK11_ORYSJ Mitogen-activated protein kinase 11 OS=Oryza sativa subsp. japonica
Align length 57
Score (bit) 31.2
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916234|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H06.
(497 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5VN19|MPK11_ORYSJ Mitogen-activated protein kinase 11 OS=Ory... 31 2.8
sp|A1CNW8|SSH4_ASPCL Protein ssh4 OS=Aspergillus clavatus GN=ssh... 31 3.6
sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase, decarboxy... 31 3.6
sp|Q85FL6|NDHK_ADICA NAD(P)H-quinone oxidoreductase subunit K, c... 30 6.1
sp|Q91309|F26_RANCA 6PF-2-K/Fru-2,6-P2ASE liver/muscle isozymes ... 30 6.1

>sp|Q5VN19|MPK11_ORYSJ Mitogen-activated protein kinase 11 OS=Oryza
sativa subsp. japonica GN=MPK11 PE=2 SV=2
Length = 570

Score = 31.2 bits (69), Expect = 2.8
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1

Query: 494 PRGSKV-SAAIAFCDAAELASARQRQWVDTTWNRQ-GGIFLMFCNERSTTFRPGLAS 330
PR + V SAAI D +AS+ + VD +WN Q G+ E ST RP ++S
Sbjct: 414 PRSTIVHSAAIPAKDYKHVASSSTKLAVDGSWNAQIQGVHANIAGEPSTIVRPAVSS 470


>sp|A1CNW8|SSH4_ASPCL Protein ssh4 OS=Aspergillus clavatus GN=ssh4
PE=3 SV=1
Length = 511

Score = 30.8 bits (68), Expect = 3.6
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2

Query: 77 RGKYQRVWT*IEDYLPPCMPFDNVVISALVRLEDKRLQKSQWAFQISLQCLPCFRNTRT 253
R +Y R +E Y P M D + +S + +++K + S W FQ L+ CF RT
Sbjct: 144 RSEYMRAKAFVEAYPPESMQTD-ISLSQFLAIQEKGV--SAWEFQPELEIANCFVEGRT 199


>sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase,
decarboxylating OS=Synechocystis sp. (strain PCC 6803)
GN=gnd PE=3 SV=1
Length = 482

Score = 30.8 bits (68), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2

Query: 8 VFIQRGPYNNGHYIKYLLDLCGQRG 82
+F ++ P GH I Y+LD GQ+G
Sbjct: 249 IFAKKDPETGGHLIDYILDAAGQKG 273


>sp|Q85FL6|NDHK_ADICA NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic OS=Adiantum capillus-veneris GN=ndhK PE=2
SV=2
Length = 250

Score = 30.0 bits (66), Expect = 6.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3

Query: 132 MQGGR*SSIYVHTL*YFPRWPHKSNRYLM*WPLLYGPLC 16
+QGG SI++ ++ F W S+ WPLLYG C
Sbjct: 33 LQGGMSDSIFMASISDFSNWSRLSSL----WPLLYGTSC 67


>sp|Q91309|F26_RANCA 6PF-2-K/Fru-2,6-P2ASE liver/muscle isozymes
OS=Rana catesbeiana PE=2 SV=1
Length = 470

Score = 30.0 bits (66), Expect = 6.1
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Frame = -2

Query: 331 PSVLKEDLTFEKLTSPYYTQCPKRRT-------SSCISEARKALQRYLEGPLGFLQPLIF 173
P ++ E++T KL+SP YT C + + C + L L+ L +++ IF
Sbjct: 163 PDIIAENITQVKLSSPDYTGCDREKVLEDFLKRIDCYQMNYEPLHDDLDSSLSYIK--IF 220

Query: 172 QSDQGRYNYIVKRHARWQVVFYL-----RPHSLILS 80
V+ H + + V+YL P S+ LS
Sbjct: 221 NVGSRYLVNRVQDHIQSRAVYYLMNIHVTPRSIYLS 256


tr_hit_id A9RGC6
Definition tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 58.2
E-value 2.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916234|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H06.
(497 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella paten... 58 2e-07
tr|Q4PL84|Q4PL84_ARATH Putative uncharacterized protein OS=Arabi... 45 0.001
tr|Q4PL83|Q4PL83_ARATH Putative uncharacterized protein OS=Arabi... 45 0.001
tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genom... 40 0.047
tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis... 40 0.047
tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1 ... 37 0.40
tr|B7PJL4|B7PJL4_IXOSC Nuclear transcription factor, X-box bindi... 36 0.88
tr|Q2UCQ8|Q2UCQ8_ASPOR Putative u4/u6 small nuclear ribonucleopr... 35 1.5
tr|B8N4P5|B8N4P5_ASPFL U4/U6 small nuclear ribonucleoprotein, pu... 33 7.5

>tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_65760 PE=4 SV=1
Length = 1055

Score = 58.2 bits (139), Expect = 2e-07
Identities = 30/63 (47%), Positives = 37/63 (58%)
Frame = -1

Query: 491 RGSKVSAAIAFCDAAELASARQRQWVDTTWNRQGGIFLMFCNERSTTFRPGLASICIEGG 312
RGSK S AI C+ A L R RQ D W+ IFL+ N+ S+ +RP LASI IE G
Sbjct: 992 RGSKSSLAIGVCEVAALGVLRARQMADKRWSSSSDIFLLARNKCSSMYRPALASIVIETG 1051

Query: 311 PDI 303
D+
Sbjct: 1052 DDL 1054


>tr|Q4PL84|Q4PL84_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana GN=At2g47290 PE=2 SV=1
Length = 826

Score = 45.4 bits (106), Expect = 0.001
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -1

Query: 491 RGSKVSAAIAFCDAAELASARQRQWVD-TTWNRQGGIFLMFCNERSTTFRPGLASICIE 318
RGSK AA AFCDA L R QW D R+ I+++ N RS+ FR LA+I +E
Sbjct: 758 RGSKKPAAEAFCDAVLLGRLRDEQWRDKDVRRRKKQIYVLVRNLRSSAFRLALATIVLE 816


>tr|Q4PL83|Q4PL83_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana GN=At2g47290 PE=2 SV=1
Length = 659

Score = 45.4 bits (106), Expect = 0.001
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -1

Query: 491 RGSKVSAAIAFCDAAELASARQRQWVD-TTWNRQGGIFLMFCNERSTTFRPGLASICIE 318
RGSK AA AFCDA L R QW D R+ I+++ N RS+ FR LA+I +E
Sbjct: 591 RGSKKPAAEAFCDAVLLGRLRDEQWRDKDVRRRKKQIYVLVRNLRSSAFRLALATIVLE 649


>tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00018608001
PE=4 SV=1
Length = 806

Score = 40.4 bits (93), Expect = 0.047
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -1

Query: 491 RGSKVSAAIAFCDAAELASARQRQWVDTTW-NRQGGIFLMFCNERSTTFRPGLASICIE 318
RGSK A A C+A LA R+ QW + R+ I+++ N RST +R LA+I +E
Sbjct: 739 RGSKKLKAEALCEAILLARLREEQWNEMPMKERRKEIYVLVRNLRSTAYRLALATIILE 797


>tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_012793 PE=4 SV=1
Length = 743

Score = 40.4 bits (93), Expect = 0.047
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -1

Query: 491 RGSKVSAAIAFCDAAELASARQRQWVDTTW-NRQGGIFLMFCNERSTTFRPGLASICIE 318
RGSK A A C+A LA R+ QW + R+ I+++ N RST +R LA+I +E
Sbjct: 676 RGSKKLKAEALCEAILLARLREEQWNEMPMKERRKEIYVLVRNLRSTAYRLALATIILE 734


>tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1
containing protein, expressed OS=Oryza sativa subsp.
japonica GN=LOC_Os11g45250 PE=4 SV=1
Length = 856

Score = 37.4 bits (85), Expect = 0.40
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1

Query: 476 SAAIAFCDAAELASARQRQWVDTTWNRQGGIFLMFCNERSTTFRPGLASICIEGGPD 306
+ A+AFC+A LA R++QW ++ I ++ N RS +R LA+I +E D
Sbjct: 795 AVAVAFCEAKLLAVLRRQQWRTHESLKRKDICVLVRNARSAAYRRALATIVLEQQED 851


>tr|B7PJL4|B7PJL4_IXOSC Nuclear transcription factor, X-box binding
protein, putative OS=Ixodes scapularis
GN=IscW_ISCW018164 PE=4 SV=1
Length = 855

Score = 36.2 bits (82), Expect = 0.88
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +3

Query: 339 PRSKSR*PFIAKHQENSALPIPSCIDPLPLSCRRKFSCITKGNSCRDFAP 488
PR+ P +A E A P P C +PLPL+CR + S T +C D P
Sbjct: 588 PRAGPWEPIVAPRLEVVAQPCPPCKEPLPLACRGRHSVDT--FACSDLRP 635


>tr|Q2UCQ8|Q2UCQ8_ASPOR Putative u4/u6 small nuclear
ribonucleoprotein OS=Aspergillus oryzae
GN=AO090012000487 PE=4 SV=1
Length = 502

Score = 35.4 bits (80), Expect = 1.5
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -2

Query: 427 SGNGSIQLGIGKAEFS*CFAMNGQRLLDLGLHPSVLKEDLTFEKLTSPYYTQCPKRRTSS 248
S NGS G G + G+ LD+GLHP++L + + F TQ RRT S
Sbjct: 27 SNNGSPLPGQGAPASEDDGSSKGRGGLDVGLHPALLSDTVEFRGAKGRQSTQSKNRRTES 86

Query: 247 CISEAR 230
++ R
Sbjct: 87 PVTSGR 92


>tr|B8N4P5|B8N4P5_ASPFL U4/U6 small nuclear ribonucleoprotein,
putative OS=Aspergillus flavus NRRL3357 GN=AFLA_017540
PE=4 SV=1
Length = 589

Score = 33.1 bits (74), Expect = 7.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2

Query: 361 GQRLLDLGLHPSVLKEDLTFEKLTSPYYTQCPKRRTSSCISEAR 230
G+ LD+GLHP++L + + F TQ RRT S ++ R
Sbjct: 136 GRGGLDVGLHPALLSDTVEFRGAKGRQSTQSKNRRTESPVTSGR 179