BP916235
Clone id YMU001_000084_H07
Library
Length 479
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTGGTTAAGGGATCCTTATTGTTAGAAATGACAAAGATCAAGAGGCAAGTACCATGG
CCCTCGGGCTACTATAGATGTTGTAGTCGGGGAAACAAATAGTTGAAAACATACTAAAGG
ATAACAATGTCGACTATTCACCTTGGCAAGTTGAAGCAACCTCCAACATAGGGGCTTTCA
ATAAGGAGTAATGATAGGTCCAATCATTTGGCACTATAATGAGGACATGTTGACAAAGGA
TAGGTTTGACTCATGAGTGGTGAGACACTGAGAGCAGTCATGGATACGACAACAAAGGTT
ATCTGTAAAGGTCAAGACTAATAAACGAGGAATAGTTTTGTTGCATCCCACTCCATCTAT
TTCTTTGTAACCATGAACCATCACCAACCGCGGGGTAGTTGGATTGACCCGTAAGAAATG
AATACATAATAGCATCATGGGGGCTATTCAAATATCTAGCACAAAAATGTATGTAAGAG
■■Homology search results ■■ -
sp_hit_id Q04225
Definition sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae
Align length 33
Score (bit) 31.2
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916235|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H07.
(479 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1 OS=Saccharom... 31 2.5
sp|A6KY05|G1092_BACV8 Glycosyl hydrolase family 109 protein 2 OS... 29 9.6

>sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1
OS=Saccharomyces cerevisiae GN=RRB1 PE=1 SV=1
Length = 511

Score = 31.2 bits (69), Expect = 2.5
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3

Query: 393 PRLVMVHGYKEIDGVGCNKTIPRLLVLTFTDNL 295
P+L+ VH KE+ V +K IP LV T TD L
Sbjct: 471 PQLLFVHWQKEVKDVKWHKQIPGCLVSTGTDGL 503


>sp|A6KY05|G1092_BACV8 Glycosyl hydrolase family 109 protein 2
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=BVU_0611 PE=3 SV=1
Length = 413

Score = 29.3 bits (64), Expect = 9.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3

Query: 168 CWRLLQLAKVNSRHCYPL--VCFQLFVSPTTTSIVARG 61
CWRL+ A+ RHC L C+ F + TT ++V +G
Sbjct: 126 CWRLVDTAEETRRHCMMLENCCYDAF-ALTTLNMVQQG 162


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916235|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H07.
(479 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******