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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916238
Clone id YMU001_000084_H10
Library
Length 315
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000084_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTGATGGATCCCAACCAGAAGTAGTTTCAATATGATCCCTTAGATGTAATTGATGCTA
CAAAGTATTGGAAGCTGGTTGGTTCTCTAGTTTGGTTGATGAACACTCATTTTGACATCA
GTTCCTGGTGGGACTCTCAGTTCATGTATGCAGAGGTGCGCCAAGCCACATATGGAGTAG
GCTCTTCAGATCTTGCGGTAGTTGAAAAAGTCTCTACCGTTGGGCAGTTGGTATGTGGTG
GGAGGTGCAGACTTGAAGATTACTCTTCGAGGATCAAGTGATTCTGTTGAGAATCCAGAT
GGACGACGTCCGATT
■■Homology search results ■■ -
sp_hit_id Q14766
Definition sp|Q14766|LTB1L_HUMAN Latent-transforming growth factor beta-binding protein, isoform 1L OS=Homo sapiens
Align length 37
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916238|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H10.
         (315 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14766|LTB1L_HUMAN Latent-transforming growth factor beta-bin...    30   3.7  
sp|Q00918|LTBP1_RAT Latent-transforming growth factor beta-bindi...    30   4.9  
sp|Q8CG19|LTB1L_MOUSE Latent-transforming growth factor beta-bin...    29   8.3  
sp|Q6P1I3|CL066_MOUSE UPF0536 protein C12orf66 homolog OS=Mus mu...    29   8.3  

>sp|Q14766|LTB1L_HUMAN Latent-transforming growth factor
           beta-binding protein, isoform 1L OS=Homo sapiens
           GN=LTBP1 PE=1 SV=2
          Length = 1595

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 138 QFMYAEVRQATYGVGSSDLAVVEKVSTVGQLVCGGRC 248
           Q + ++V Q T   G S L V +K    G  VCGGRC
Sbjct: 138 QVVRSKVPQETQSGGGSRLQVHQKQQLQGVNVCGGRC 174


>sp|Q00918|LTBP1_RAT Latent-transforming growth factor beta-binding
           protein 1 OS=Rattus norvegicus GN=Ltbp1 PE=1 SV=1
          Length = 1712

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 138 QFMYAEVRQATYGVGSSDLAVVEKVSTVGQLVCGGRC 248
           Q + ++V+Q T   G S L V +K    G  VCGG+C
Sbjct: 131 QVVRSKVQQDTQSSGGSRLQVQQKQQLQGINVCGGQC 167


>sp|Q8CG19|LTB1L_MOUSE Latent-transforming growth factor
           beta-binding protein, isoform 1L OS=Mus musculus
           GN=Ltbp1 PE=2 SV=1
          Length = 1713

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 138 QFMYAEVRQATYGVGSSDLAVVEKVSTVGQLVCGGRC 248
           Q + ++V+Q     G S L V +K    G  VCGG+C
Sbjct: 131 QVVRSQVQQDAQSAGGSRLQVQQKQQLQGINVCGGQC 167


>sp|Q6P1I3|CL066_MOUSE UPF0536 protein C12orf66 homolog OS=Mus
           musculus PE=1 SV=1
          Length = 445

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 69  WKLVGSLVWLMNTHFDISSWWDSQFMYAEVRQATYGVGSSDLAV 200
           WK + SLV L N H  + SW  +     E ++  +G G S  AV
Sbjct: 207 WKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG-GQSQKAV 249
tr_hit_id A5BGK7
Definition tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 39
Score (bit) 37.7
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916238|Adiantum capillus-veneris mRNA, clone:
YMU001_000084_H10.
         (315 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis...    38   2e-04
tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis...    37   0.002
tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis...    36   0.004
tr|Q10RM4|Q10RM4_ORYSJ Retrotransposon protein, putative, unclas...    33   0.017
tr|Q0J8A6|Q0J8A6_ORYSJ Os08g0125300 protein OS=Oryza sativa subs...    30   0.36 
tr|B8BDZ6|B8BDZ6_ORYSI Putative uncharacterized protein OS=Oryza...    30   0.36 
tr|A5C788|A5C788_VITVI Putative uncharacterized protein OS=Vitis...    37   0.38 
tr|Q0PY40|Q0PY40_SOLLC Putative polyprotein OS=Solanum lycopersi...    31   0.59 
tr|A5BFS0|A5BFS0_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5AYJ3|A5AYJ3_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5BPV9|A5BPV9_VITVI Putative uncharacterized protein OS=Vitis...    32   1.3  
tr|A5CAQ8|A5CAQ8_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A5C6R1|A5C6R1_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A5BCT3|A5BCT3_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A5ARL6|A5ARL6_VITVI Putative uncharacterized protein OS=Vitis...    35   2.5  
tr|A5AF91|A5AF91_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|Q84SW8|Q84SW8_ORYSJ Gag-pol polyprotein (Retrotransposon prot...    29   3.5  
tr|Q2RBR6|Q2RBR6_ORYSJ Os11g0101300 protein OS=Oryza sativa subs...    34   4.2  
tr|Q2QYZ3|Q2QYZ3_ORYSJ Retrotransposon protein, putative, Ty1-co...    34   4.2  
tr|B6REL8|B6REL8_9BRAS Integrase OS=Boechera divaricarpa GN=TnIn...    34   4.2  
tr|Q560L7|Q560L7_CRYNE Putative uncharacterized protein OS=Crypt...    34   4.2  
tr|A5B8R6|A5B8R6_VITVI Putative uncharacterized protein OS=Vitis...    33   5.5  
tr|A5ALE5|A5ALE5_VITVI Putative uncharacterized protein OS=Vitis...    33   5.5  
tr|Q9XG91|Q9XG91_PHAVU Tpv2-1c protein (Fragment) OS=Phaseolus v...    31   6.3  
tr|Q7XMW3|Q7XMW3_ORYSJ OSJNBb0040D15.11 protein OS=Oryza sativa ...    27   6.4  
tr|Q9FX79|Q9FX79_ARATH Putative retroelement polyprotein OS=Arab...    33   7.1  
tr|O23588|O23588_ARATH Retrotransposon like protein OS=Arabidops...    33   7.1  
tr|Q2B366|Q2B366_9BACI Succinyl-diaminopimelate desuccinylase OS...    33   9.3  
tr|A5CB75|A5CB75_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  
tr|A5BQE5|A5BQE5_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  

>tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007301 PE=4 SV=1
          Length = 973

 Score = 37.7 bits (86), Expect(2) = 2e-04
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +3

Query: 6   MDPNQK*FQYDPLDVIDATKYWKLVGSLVWLMNTHFDIS 122
           M+PN K  +++  D+ DAT Y +LVGSLV+L  T  DIS
Sbjct: 726 MEPNAKMCEHEGKDLKDATMYRQLVGSLVYLTLTRPDIS 764



 Score = 30.8 bits (68), Expect(2) = 2e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +1

Query: 130 GTLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWYVVGGADLKITLRGSSDSVENPDGRR 309
           G +S  MQ   KPH+E   +ILR +K ++  G  Y   G D K+     +D   + D RR
Sbjct: 768 GVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLY-KKGEDCKLVGYCDADYAGDHDTRR 826


>tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041885 PE=4 SV=1
          Length = 408

 Score = 36.6 bits (83), Expect(2) = 0.002
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +3

Query: 6   MDPNQK*FQYDPLDVIDATKYWKLVGSLVWLMNTHFDIS 122
           M+PN K  +++  D+ DAT Y +LVGSL++L  T  DIS
Sbjct: 204 MEPNAKMCEHEGKDLKDATMYRQLVGSLLYLTLTRPDIS 242



 Score = 28.5 bits (62), Expect(2) = 0.002
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +1

Query: 130 GTLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWYVVGGADLKITLRGSSDSVENPDGRR 309
           G +S  MQ   K H+E   QILR +K ++  G  Y   G D K+     +D V + D  R
Sbjct: 246 GVMSRYMQNPKKSHLEAIRQILRHVKGTIDYGLLY-KKGEDCKLVGYCDADYVGDHDTHR 304


>tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027864 PE=4 SV=1
          Length = 1300

 Score = 36.2 bits (82), Expect(2) = 0.004
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +3

Query: 6    MDPNQK*FQYDPLDVIDATKYWKLVGSLVWLMNTHFDIS 122
            M+PN K  +++  D+ DAT Y +LVGSL++L  T  DIS
Sbjct: 1053 MEPNAKMCEHEGKDLKDATMYRQLVGSLLYLTLTXPDIS 1091



 Score = 27.7 bits (60), Expect(2) = 0.004
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 130  GTLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWY 234
            G +S  MQ   KPH+E   +ILR +K ++  G  Y
Sbjct: 1095 GVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLY 1129


>tr|Q10RM4|Q10RM4_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os03g05850 PE=4 SV=1
          Length = 1409

 Score = 32.7 bits (73), Expect(2) = 0.017
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +1

Query: 130  GTLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWYVVGGADLKITLRGSSDSVENPDGRR 309
            G  S  M+R    H +   QILR +K ++  G  Y  G   LKIT    SD   + D RR
Sbjct: 1207 GVASRFMERPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRR 1266



 Score = 28.9 bits (63), Expect(2) = 0.017
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +3

Query: 51   IDATKYWKLVGSLVWLMNTHFDIS 122
            +DAT+Y +++GSL +L++T  D+S
Sbjct: 1180 VDATEYRRIIGSLRYLLHTRPDLS 1203


>tr|Q0J8A6|Q0J8A6_ORYSJ Os08g0125300 protein OS=Oryza sativa subsp.
            japonica GN=Os08g0125300 PE=2 SV=1
          Length = 1427

 Score = 30.0 bits (66), Expect(2) = 0.36
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 130  GTLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWYVVGGADLKITLRGSSDSVENPDGRR 309
            G  S  M+R    H++    ILR LK +L  G  +  G   L IT    SD   + D RR
Sbjct: 1225 GVASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRR 1284



 Score = 26.9 bits (58), Expect(2) = 0.36
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 51   IDATKYWKLVGSLVWLMNTHFDIS 122
            IDAT+Y +++G L +L++T  D+S
Sbjct: 1198 IDATEYRRVIGCLRYLLHTRPDLS 1221


>tr|B8BDZ6|B8BDZ6_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_30754 PE=4 SV=1
          Length = 1427

 Score = 30.0 bits (66), Expect(2) = 0.36
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 130  GTLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWYVVGGADLKITLRGSSDSVENPDGRR 309
            G  S  M+R    H++    ILR LK +L  G  +  G   L IT    SD   + D RR
Sbjct: 1225 GVASRFMERPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRR 1284



 Score = 26.9 bits (58), Expect(2) = 0.36
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 51   IDATKYWKLVGSLVWLMNTHFDIS 122
            IDAT+Y +++G L +L++T  D+S
Sbjct: 1198 IDATEYRRVIGCLRYLLHTRPDLS 1221


>tr|A5C788|A5C788_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_026292 PE=4 SV=1
          Length = 1161

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +3

Query: 6    MDPNQK*FQYDPLDVIDATKYWKLVGSLVWLMNTHFDIS 122
            M+PN K  +++  D+ DAT Y +LVGSL++L  T  DIS
Sbjct: 980  MEPNAKMCEHEGKDLKDATMYRQLVGSLLYLTFTRTDIS 1018



 Score = 34.3 bits (77), Expect = 3.2
 Identities = 30/83 (36%), Positives = 40/83 (48%)
 Frame = +1

Query: 61   QSIGSWLVL*FG**TLILTSVPGGTLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWYVV 240
            Q +GS L L F   T    S   G +S  MQ   KPH+E   +ILR +K ++  G  Y  
Sbjct: 1002 QLVGSLLYLTF---TRTDISYAVGVMSRYMQNPKKPHLEAVRRILRHVKGTIDYGLLY-K 1057

Query: 241  GGADLKITLRGSSDSVENPDGRR 309
             G D K+     +D V + D RR
Sbjct: 1058 KGEDYKLVGYCDADYVGDHDTRR 1080


>tr|Q0PY40|Q0PY40_SOLLC Putative polyprotein OS=Solanum lycopersicum
            PE=4 SV=1
          Length = 1428

 Score = 30.8 bits (68), Expect(2) = 0.59
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = +1

Query: 133  TLSSCMQRCAKPHME*ALQILR*LKKSLPLGSWYVVGGADLKITLRGSSDSVENPDGRRP 312
            TLS  MQ   K H+E A +++R LK S+  G W      ++ IT    SD    P+ RR 
Sbjct: 1243 TLSQFMQSPKKSHIEAATRVIRYLKGSVGQGVWLHSEPTNI-ITCWCDSDWAACPNTRRS 1301

Query: 313  I 315
            I
Sbjct: 1302 I 1302



 Score = 25.4 bits (54), Expect(2) = 0.59
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 33   YDPLDVI-DATKYWKLVGSLVWLMNTHFDIS 122
            Y+  DV+ D T Y +L+G L+++  T  DIS
Sbjct: 1208 YNKDDVLHDITSYQRLIGKLIYVTITRPDIS 1238


>tr|A5BFS0|A5BFS0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_021511 PE=4 SV=1
          Length = 491

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
 Frame = +3

Query: 6   MDPNQK*FQYDPLDVIDATKYWKLVGSLVWLMNTHFDISSWWD--SQFMYA 152
           +DPNQK    +  ++++ T+Y KLVG L++L +T  DI+      SQFM++
Sbjct: 249 IDPNQKLGDTNDGNLVNTTRYQKLVGKLIYLCHTRPDIAFAVSIVSQFMHS 299


>tr|A5AYJ3|A5AYJ3_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_041073 PE=4 SV=1
          Length = 1505

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
 Frame = +3

Query: 6    MDPNQK*FQYDPLDVIDATKYWKLVGSLVWLMNTHFDISSWWD--SQFMYA 152
            +DPNQK    +  ++++ T+Y KLVG L++L +T  DI+      SQFM++
Sbjct: 1263 IDPNQKLGDTNDGNLVNTTRYQKLVGKLIYLSHTRPDIAFAVSIVSQFMHS 1313