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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916243
Clone id YMU001_000085_A04
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000085_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCAAAAGGGAGGTGTCTTTGATATACTTCAGTTGTTGTTGCTGCTCTATTAGTCAGATGT
GGACATCTATTCTAATAATGTCCCAACTCTCCACATTCAGAGCATCAAACATCAAGCGTT
ATGCTTCACCAACGACCATAGAGCAGAAGATAGCCCGTTTATGTCAAGGTTTAAGAGAAC
CAATCAGCTCCCGATTAGAAGCCATGAAACCTACTACTGTGCAAGATGCTTTACTACGAG
CTAAGCCCTTAACGAAGGAGTAAGGGATTAGAAGGAGAGTTGAACAAAATCAAAGTTTTA
ACGATGCCAGACGACCGATAAGGCTTCCCAATAATAAAGGACAACCATAGAGAGCTTATG
TTGCTAATGCTCAAAATCCTTCACGCTACAAACTTTGAGTAGTACTCTTCCAAGGATAAT
CTGTATTGTTTTAAGCTAAAGAACTCATTCATCTTCAACACTTCATGGGCAGGAGGTAAG
TATC
■■Homology search results ■■ -
sp_hit_id Q12476
Definition sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae
Align length 31
Score (bit) 33.1
E-value 0.68
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916243|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_A04.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN...    33   0.68 
sp|A5DC90|ATG15_PICGU Putative lipase ATG15 OS=Pichia guilliermo...    31   2.6  
sp|Q5A4N0|ATG15_CANAL Putative lipase ATG15 OS=Candida albicans ...    31   2.6  
sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Usti...    31   3.4  
sp|Q8DXC2|LACC_STRA5 Tagatose-6-phosphate kinase OS=Streptococcu...    30   4.4  
sp|Q3JZ20|LACC_STRA1 Tagatose-6-phosphate kinase OS=Streptococcu...    30   4.4  
sp|Q8E346|LACC2_STRA3 Tagatose-6-phosphate kinase 2 OS=Streptoco...    30   4.4  
sp|Q9X809|COX3_STRCO Probable cytochrome c oxidase subunit 3 OS=...    30   5.7  
sp|Q82AK5|COX3_STRAW Probable cytochrome c oxidase subunit 3 OS=...    30   5.7  
sp|Q6FPI6|ATG15_CANGA Putative lipase ATG15 OS=Candida glabrata ...    30   5.7  
sp|Q6LYE6|VATB_METMP V-type ATP synthase beta chain OS=Methanoco...    30   7.5  
sp|A6VFZ3|VATB_METM7 V-type ATP synthase beta chain OS=Methanoco...    30   7.5  
sp|A4FXD3|VATB_METM5 V-type ATP synthase beta chain OS=Methanoco...    30   7.5  
sp|P25641|ATG15_YEAST Putative lipase ATG15 OS=Saccharomyces cer...    30   7.5  
sp|A6ZTP2|ATG15_YEAS7 Putative lipase ATG15 OS=Saccharomyces cer...    30   7.5  
sp|A7TG13|ATG15_VANPO Putative lipase ATG15 OS=Vanderwaltozyma p...    30   7.5  
sp|Q75EN3|ATG15_ASHGO Putative lipase ATG15 OS=Ashbya gossypii G...    30   7.5  
sp|P00419|COX3_XENLA Cytochrome c oxidase subunit 3 OS=Xenopus l...    29   9.8  
sp|A3LV34|ATG15_PICST Putative lipase ATG15 OS=Pichia stipitis G...    29   9.8  
sp|A5E567|ATG15_LODEL Putative lipase ATG15 OS=Lodderomyces elon...    29   9.8  
sp|Q6BLM0|ATG15_DEBHA Putative lipase ATG15 OS=Debaryomyces hans...    29   9.8  

>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae
           GN=AIR2 PE=1 SV=1
          Length = 344

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 104 CSECGELGHY*NRCPHLTNRAATTTEVYQRH 12
           CS+C E+GHY ++CPH   +   T    ++H
Sbjct: 101 CSKCDEVGHYRSQCPHKWKKVQCTLCKSKKH 131



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 104 CSECGELGHY*NRCPH-LTNRAATTTEVYQRHLP 6
           C+ C + GH    CPH + +    T + Y RH P
Sbjct: 63  CNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCP 96


>sp|A5DC90|ATG15_PICGU Putative lipase ATG15 OS=Pichia
           guilliermondii GN=ATG15 PE=3 SV=2
          Length = 566

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 21  IYFSCCCCSISQMWTSI 71
           + FSCCC  IS MWT++
Sbjct: 297 LLFSCCCARISYMWTTV 313


>sp|Q5A4N0|ATG15_CANAL Putative lipase ATG15 OS=Candida albicans
           GN=ATG15 PE=3 SV=1
          Length = 597

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 21  IYFSCCCCSISQMWTSI 71
           + FSCCC  IS MWT++
Sbjct: 295 LLFSCCCARISYMWTTV 311


>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1
           OS=Ustilago maydis GN=YTH1 PE=3 SV=1
          Length = 366

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 131 W*SITLDV*CSECGELGHY*NRCPH 57
           W     +V C +CGE+GH+ N CP+
Sbjct: 314 WRKDLSEVLCFKCGEMGHFANMCPN 338


>sp|Q8DXC2|LACC_STRA5 Tagatose-6-phosphate kinase OS=Streptococcus
           agalactiae serotype V GN=lacC PE=3 SV=1
          Length = 310

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 105 SNIKRYASPTTIEQKIARLCQGLREPISSRLEAMKPTTVQD 227
           S +K  A PT I+  +  L Q + +PIS  L+ +K T  QD
Sbjct: 171 SVLKSSAKPTVIKPNLEELTQLIGKPISYSLDELKSTLQQD 211


>sp|Q3JZ20|LACC_STRA1 Tagatose-6-phosphate kinase OS=Streptococcus
           agalactiae serotype Ia GN=lacC PE=3 SV=1
          Length = 310

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 105 SNIKRYASPTTIEQKIARLCQGLREPISSRLEAMKPTTVQD 227
           S +K  A PT I+  +  L Q + +PIS  L+ +K T  QD
Sbjct: 171 SVLKSSAKPTVIKPNLEELTQLIGKPISYSLDELKSTLQQD 211


>sp|Q8E346|LACC2_STRA3 Tagatose-6-phosphate kinase 2
           OS=Streptococcus agalactiae serotype III GN=lacC2 PE=3
           SV=1
          Length = 310

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 105 SNIKRYASPTTIEQKIARLCQGLREPISSRLEAMKPTTVQD 227
           S +K  A PT I+  +  L Q + +PIS  L+ +K T  QD
Sbjct: 171 SVLKSSAKPTVIKPNLEELTQLIGKPISYSLDELKSTLQQD 211


>sp|Q9X809|COX3_STRCO Probable cytochrome c oxidase subunit 3
           OS=Streptomyces coelicolor GN=ctaE PE=3 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 405 VLLKVCSVKDFEH*QHKLSMVVLYYWEALSVVW 307
           VL +  + + F H Q   ++VV YYW  + VVW
Sbjct: 163 VLGRTYAARRFTHEQATAAIVVSYYWHFVDVVW 195


>sp|Q82AK5|COX3_STRAW Probable cytochrome c oxidase subunit 3
           OS=Streptomyces avermitilis GN=ctaE PE=3 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 405 VLLKVCSVKDFEH*QHKLSMVVLYYWEALSVVW 307
           VL +  + + F H Q   ++VV YYW  + VVW
Sbjct: 163 VLGRTYAARRFTHEQATAAIVVSYYWHFVDVVW 195


>sp|Q6FPI6|ATG15_CANGA Putative lipase ATG15 OS=Candida glabrata
           GN=ATG15 PE=3 SV=1
          Length = 504

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 21  IYFSCCCCSISQMWTSI 71
           + FSCCC  IS +WT++
Sbjct: 246 LLFSCCCARISYLWTTV 262
tr_hit_id Q65352
Definition tr|Q65352|Q65352_NPVAC ORF A span 522-1895 OS=Autographa californica nuclear polyhedrosis virus
Align length 81
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916243|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_A04.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q65352|Q65352_NPVAC ORF A span 522-1895 OS=Autographa califor...    36   1.1  
tr|Q82AC8|Q82AC8_STRAW Putative DNA-binding protein OS=Streptomy...    35   1.8  
tr|A6GKE5|A6GKE5_9DELT Putative uncharacterized protein OS=Plesi...    34   3.1  
tr|Q6CVR8|Q6CVR8_KLULA KLLA0B09944p OS=Kluyveromyces lactis GN=K...    34   3.1  
tr|Q47E52|Q47E52_DECAR Cysteine synthase OS=Dechloromonas aromat...    34   4.1  
tr|Q7XKY8|Q7XKY8_ORYSJ OSJNBa0022F16.16 protein OS=Oryza sativa ...    34   4.1  
tr|Q53J53|Q53J53_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   5.4  
tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa s...    33   7.0  
tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon pro...    33   7.0  
tr|Q53QL2|Q53QL2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   7.0  
tr|Q53MS0|Q53MS0_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   7.0  
tr|Q2R1L3|Q2R1L3_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   7.0  
tr|Q2R193|Q2R193_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   7.0  
tr|Q2QPU5|Q2QPU5_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   7.0  
tr|Q10G32|Q10G32_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   7.0  
tr|Q01I31|Q01I31_ORYSA OSIGBa0145G11.8 protein OS=Oryza sativa G...    33   7.0  
tr|B5VF97|B5VF97_YEAS6 YDL175Cp-like protein OS=Saccharomyces ce...    33   7.0  
tr|B3LH59|B3LH59_YEAS1 Putative uncharacterized protein OS=Sacch...    33   7.0  
tr|B2ACM6|B2ACM6_PODAN Predicted CDS Pa_3_1460 OS=Podospora anse...    33   7.0  
tr|A6ZXF6|A6ZXF6_YEAS7 Arginine methyltransferase-interacting ri...    33   7.0  
tr|Q75H43|Q75H43_ORYSJ Putative uncharacterized protein OSJNBa00...    33   9.2  

>tr|Q65352|Q65352_NPVAC ORF A span 522-1895 OS=Autographa
           californica nuclear polyhedrosis virus PE=4 SV=1
          Length = 410

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
 Frame = +3

Query: 129 PTTIEQK--------IARLCQGLREPISSRLEAMKPTTVQDALLRAKPLTKE*GIRRRVE 284
           PTTIE K        +    +GL+EP+ SR+  M+P T++ AL   + + +E  +    +
Sbjct: 137 PTTIEAKRALYKKVTVQAFVRGLKEPLGSRIRCMRPETIEKAL---EYVQEELNVIYLQQ 193

Query: 285 QNQSFNDARRPIRLPNNKGQP 347
           +N+S      P  LP  +  P
Sbjct: 194 RNESSRAHSSPKMLPIPQQSP 214


>tr|Q82AC8|Q82AC8_STRAW Putative DNA-binding protein OS=Streptomyces
           avermitilis GN=SAV6131 PE=4 SV=1
          Length = 356

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 23/91 (25%), Positives = 41/91 (45%)
 Frame = +3

Query: 99  RASNIKRYASPTTIEQKIARLCQGLREPISSRLEAMKPTTVQDALLRAKPLTKE*GIRRR 278
           +    K  A  TT+        +   + I+++  A+K TTV+ +  + K   KE G+R+ 
Sbjct: 34  KTGGTKSAAKKTTVAASAGAATKAAAKKITAKRTAVKKTTVKKSTAK-KSTVKETGVRKT 92

Query: 279 VEQNQSFNDARRPIRLPNNKGQP*RAYVANA 371
           V Q ++      P + P+ +  P R    NA
Sbjct: 93  VAQKEAAASKVAPSKRPDEEEGPERPAAKNA 123


>tr|A6GKE5|A6GKE5_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_39230 PE=4 SV=1
          Length = 529

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 126 SPTTIEQKIARLCQGL-REPISSRLEAMKPTTVQDALLRAKPLTKE*GIRRRVEQNQSFN 302
           +PT  ++ +ARLCQ L +E + +RL    P +V    +R  P      ++R +E+ Q F+
Sbjct: 360 TPTPEDRMLARLCQRLMQERVDARLVTAGPLSVFAVRVRISPTDPVRSLKRIIERMQGFS 419

Query: 303 DARR 314
            A +
Sbjct: 420 AAEQ 423


>tr|Q6CVR8|Q6CVR8_KLULA KLLA0B09944p OS=Kluyveromyces lactis
           GN=KLLA0B09944g PE=4 SV=1
          Length = 674

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 165 QGLREPISSRLEAMKPTTVQDALLRAKPLTKE*G-IRRRVEQNQSFNDARRPIRLPNNKG 341
           Q LR  +S+ ++  KPT  +  + R K LT   G IR  + Q+   N+ R   +LP    
Sbjct: 405 QPLRRRVSNLIDRSKPTERKSLIPRIKELTPVKGLIRENITQSNETNNIRAKKQLPEEVS 464

Query: 342 QP 347
           QP
Sbjct: 465 QP 466


>tr|Q47E52|Q47E52_DECAR Cysteine synthase OS=Dechloromonas aromatica
           (strain RCB) GN=Daro_2138 PE=3 SV=1
          Length = 324

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +3

Query: 189 SRLEAMKPTTVQDALLRAKPLTKE*GIRRRVEQNQSFNDARRPIRLPNNKGQP*RAYVAN 368
           S L+A++  + +DA+L A+ L KE GI   +    +   A R  R+P N G   +  VA 
Sbjct: 243 SLLDAVEQVSNEDAVLYARRLAKEEGIISGISSGAAVAAAARLARIPENAG---KTIVAI 299

Query: 369 AQNPSRYKL*VVLFQG 416
             +     L  +LF+G
Sbjct: 300 LPDSGERYLSSILFEG 315


>tr|Q7XKY8|Q7XKY8_ORYSJ OSJNBa0022F16.16 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0022F16.16 PE=4 SV=1
          Length = 1402

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 104 CSECGELGHY*NRCPHLTNRAATT 33
           C  CGE GH+ N+CPHL      T
Sbjct: 226 CFNCGEYGHFANKCPHLNKTPIRT 249


>tr|Q53J53|Q53J53_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g21830 PE=4 SV=1
          Length = 1212

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
 Frame = -3

Query: 104 CSECGELGHY*NRCPH------------LTNRAATTTEVYQRHLP 6
           C  CGE GHY N CPH            +T R  TT    +  LP
Sbjct: 563 CFNCGEYGHYANNCPHPRKTPVRTGANAMTVRGTTTPAAGREDLP 607


>tr|Q7XUA3|Q7XUA3_ORYSJ OSJNBa0019D11.8 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0019D11.8 PE=4 SV=1
          Length = 1470

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 113 DV*CSECGELGHY*NRCPH 57
           +V C  CGE GHY N CPH
Sbjct: 288 NVDCFNCGEYGHYANNCPH 306


>tr|Q7G774|Q7G774_ORYSJ Putative polyprotein (Retrotransposon
           protein, putative, Ty3-gypsy subclass) OS=Oryza sativa
           subsp. japonica GN=OSJNBa0034B05.13 PE=4 SV=1
          Length = 1569

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 113 DV*CSECGELGHY*NRCPH 57
           +V C  CGE GHY N CPH
Sbjct: 499 NVDCFNCGEYGHYANNCPH 517


>tr|Q53QL2|Q53QL2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g19910 PE=4 SV=1
          Length = 1436

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 113 DV*CSECGELGHY*NRCPH 57
           +V C  CGE GHY N CPH
Sbjct: 288 NVDCFNCGEYGHYANNCPH 306