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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916245
Clone id YMU001_000085_A08
Library
Length 304
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000085_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGAAGAATTCGCGGCCGCGAATTACTGGTAAATCCTTTAAGGCAAAGAAAAAATCTTG
GGACACATTGTATCCAAAAATGGGGTTTCCACTGATCGAGATAAGATACAGGTGATCGTT
GCACTTCCAAGACCTATTACTCTTCCTACTTTCTTGTGAGCGAGAAGCATAGCATTACTT
GTATACGTGTTGATTAATCAATGCAATGCCGAACCTCCTTTATCTTGTGAACACCACATG
CAAATGGCATTTGTCCCACCTGTAAATCTCCCCAGTTCCTACTAGCATTGTATACTTCAC
ACCA
■■Homology search results ■■ -
sp_hit_id Q9SZR7
Definition sp|Q9SZR7|FB247_ARATH Putative F-box protein At4g29970 OS=Arabidopsis thaliana
Align length 74
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916245|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_A08.
         (279 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SZR7|FB247_ARATH Putative F-box protein At4g29970 OS=Arabid...    30   4.9  
sp|Q8K4Q7|CERK1_MOUSE Ceramide kinase OS=Mus musculus GN=Cerk PE...    29   8.3  
sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from tra...    29   8.3  

>sp|Q9SZR7|FB247_ARATH Putative F-box protein At4g29970
           OS=Arabidopsis thaliana GN=At4g29970 PE=2 SV=1
          Length = 283

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
 Frame = +3

Query: 45  VSKNGVSTDRDKIQVIVALPRPITLPTFL*ARSIALLVYVLINQCNAEPPLSCEHH---- 212
           VSK+  S   DK    + L R  TLP  L   S++ L    ++  + E P SC+HH    
Sbjct: 40  VSKHWSSIILDKDITELYLTRSSTLPRLLFQVSVSRLKMQFLHSSSLEGP-SCDHHRVAV 98

Query: 213 -----MQMAFVPPV 239
                ++  F PPV
Sbjct: 99  TLNHDLEYRFSPPV 112


>sp|Q8K4Q7|CERK1_MOUSE Ceramide kinase OS=Mus musculus GN=Cerk PE=2
           SV=1
          Length = 531

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 276 CEVYNASRNWGDLQVGQMPFACGVHKIKEVRH 181
           CE + +S  W  ++    PFA  VH++K VRH
Sbjct: 66  CEKHASSGRWHKME---NPFAFTVHRVKRVRH 94


>sp|P10401|POLY_DROME Retrovirus-related Pol polyprotein from
           transposon gypsy OS=Drosophila melanogaster GN=pol PE=4
           SV=1
          Length = 1035

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 33  LGHIVSKNGVSTDRDKIQVIVALPRP 110
           LG IVSK+G  +D +K++ I   P P
Sbjct: 386 LGFIVSKDGTKSDPEKVKAIQEYPEP 411
tr_hit_id A5B504
Definition tr|A5B504|A5B504_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 30
Score (bit) 42.7
E-value 0.009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916245|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_A08.
         (279 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B504|A5B504_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|A5C891|A5C891_VITVI Putative uncharacterized protein OS=Vitis...    42   0.016
tr|A5CBG2|A5CBG2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|A5C4S0|A5C4S0_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|A5C105|A5C105_VITVI Putative uncharacterized protein OS=Vitis...    42   0.020
tr|A5BJR9|A5BJR9_VITVI Putative uncharacterized protein (Fragmen...    42   0.020
tr|A5C265|A5C265_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|A5BJV3|A5BJV3_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|A5B295|A5B295_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|A5AZ23|A5AZ23_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|A5C6K3|A5C6K3_VITVI Putative uncharacterized protein OS=Vitis...    41   0.035
tr|A5C357|A5C357_VITVI Putative uncharacterized protein OS=Vitis...    41   0.035
tr|A5BKR4|A5BKR4_VITVI Putative uncharacterized protein OS=Vitis...    41   0.035
tr|A5B486|A5B486_VITVI Putative uncharacterized protein OS=Vitis...    41   0.035
tr|A5AIX4|A5AIX4_VITVI Putative uncharacterized protein OS=Vitis...    41   0.035
tr|A5CBB5|A5CBB5_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5CAU8|A5CAU8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5C630|A5C630_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5C5U7|A5C5U7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5BTM1|A5BTM1_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5BJ88|A5BJ88_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5BJ46|A5BJ46_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5ASA2|A5ASA2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5ALE1|A5ALE1_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5AIL6|A5AIL6_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5ADF7|A5ADF7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5ADC2|A5ADC2_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5ACM9|A5ACM9_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A7QXB5|A7QXB5_VITVI Chromosome undetermined scaffold_219, who...    40   0.059
tr|A5CBC3|A5CBC3_VITVI Putative uncharacterized protein OS=Vitis...    40   0.059

>tr|A5B504|A5B504_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_026552 PE=4 SV=1
          Length = 2320

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 17/30 (56%), Positives = 24/30 (80%)
 Frame = +3

Query: 21   KEKILGHIVSKNGVSTDRDKIQVIVALPRP 110
            KE +LGHI+SKNG+  D+ K+++IV LP P
Sbjct: 1081 KEIVLGHIISKNGIEVDKAKVELIVKLPPP 1110


>tr|A5C891|A5C891_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042524 PE=4 SV=1
          Length = 1038

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 16/30 (53%), Positives = 24/30 (80%)
 Frame = +3

Query: 30  ILGHIVSKNGVSTDRDKIQVIVALPRPITL 119
           +LGHI+SK G+  D+ K+++IV LP PIT+
Sbjct: 151 VLGHIISKKGIEVDKAKVELIVKLPSPITV 180


>tr|A5CBG2|A5CBG2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015348 PE=4 SV=1
          Length = 1297

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +3

Query: 30  ILGHIVSKNGVSTDRDKIQVIVALPRPITL 119
           +LGHI+SK G+  D+ K+++I+ LP PIT+
Sbjct: 831 VLGHIISKKGIEVDKAKVELIIKLPSPITV 860


>tr|A5C4S0|A5C4S0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033243 PE=4 SV=1
          Length = 1374

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +3

Query: 30  ILGHIVSKNGVSTDRDKIQVIVALPRPITL 119
           +LGHI+SK G+  D++K+++IV LP P T+
Sbjct: 812 VLGHIISKKGIEVDKEKVELIVKLPSPTTV 841


>tr|A5C105|A5C105_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036970 PE=4 SV=1
          Length = 637

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +3

Query: 30  ILGHIVSKNGVSTDRDKIQVIVALPRPITL 119
           +LGHI+SK G+  D++K+++IV LP P T+
Sbjct: 119 VLGHIISKKGIEVDKEKVELIVKLPSPTTV 148


>tr|A5BJR9|A5BJR9_VITVI Putative uncharacterized protein (Fragment)
           OS=Vitis vinifera GN=VITISV_000510 PE=4 SV=1
          Length = 1022

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = +3

Query: 30  ILGHIVSKNGVSTDRDKIQVIVALPRP 110
           +LGHI+SKNG+  D++K+++IV LP P
Sbjct: 541 VLGHIISKNGIEVDKEKVELIVKLPPP 567


>tr|A5C265|A5C265_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_009564 PE=4 SV=1
          Length = 2225

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 30   ILGHIVSKNGVSTDRDKIQVIVALPRP 110
            +LGH++SK G+  DR K+++IV LPRP
Sbjct: 1482 VLGHVISKKGIEVDRAKVELIVKLPRP 1508


>tr|A5BJV3|A5BJV3_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_021930 PE=4 SV=1
          Length = 1755

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +3

Query: 30   ILGHIVSKNGVSTDRDKIQVIVALPRPITLPTFL 131
            +LGHI+SKNG+  D+ K+++IV LP P     F+
Sbjct: 1116 VLGHIISKNGIEVDKAKVELIVKLPPPTNXAKFV 1149


>tr|A5B295|A5B295_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007659 PE=4 SV=1
          Length = 886

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 30  ILGHIVSKNGVSTDRDKIQVIVALPRPITL 119
           +LGHI+SK G+  DR K+++IV LP P T+
Sbjct: 575 VLGHIISKQGIKVDRAKVELIVKLPSPTTV 604


>tr|A5AZ23|A5AZ23_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008584 PE=4 SV=1
          Length = 1286

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +3

Query: 30  ILGHIVSKNGVSTDRDKIQVIVALPRPITL 119
           +LGHI+SK G+  D++KI++I+ LP P T+
Sbjct: 863 VLGHIISKKGIEVDKEKIELIIKLPLPTTV 892