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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916247
Clone id YMU001_000085_A12
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000085_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGCTGGAAGAATTCGCTTGTGTACATGAAGAGTCTGTCTCCTCCAGAGCCGTAGCCAGG
AACCACTTTAACGGCTCCCCCATAGAAGCTTCTCTTCTAACCACTTCCGACCTTCATTTG
CTATGTTAAATGAGGTTGAAGGTTTAGACTAATCATAATTCATCACCATCCTGCCTGCTT
CCAATTAATAACTAGCTAAGTACATAAGTGTTAGCCTAAGACCGCACCATTACTGTTAGG
GCTCGGTTTCTGAACTGTGCATGAGCTATAGGTCTCACACGGGTACTTCTTAAGAACTTA
AATCCTCCACTTTGCTTGCAATCCCTGTTCGATTGGAGGGCCTGAACATTTGGTCGAGGC
CTTGGGTTGGACGCTATAATTTCTGTATTGTCTGCACGCATCTCTGGCTATTCGTGGCTA
ATGTCCTAAGTCC
■■Homology search results ■■ -
sp_hit_id P93311
Definition sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana
Align length 23
Score (bit) 34.7
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916247|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_A12.
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial OS=...    35   0.15 
sp|P92812|RM02_ORYSJ 60S ribosomal protein L2, mitochondrial OS=...    31   2.2  
sp|Q2F969|RM02_ORYSI 60S ribosomal protein L2, mitochondrial OS=...    31   2.2  
sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial OS=...    31   2.2  
sp|Q9CP21|CCA_PASMU Multifunctional CCA protein OS=Pasteurella m...    30   3.8  
sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial OS=...    29   6.4  

>sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial
           OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1
          Length = 349

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           +AS+ LEAG+MVMN D SKPSTS
Sbjct: 310 IASHQLEAGKMVMNCDWSKPSTS 332


>sp|P92812|RM02_ORYSJ 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2
          Length = 502

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           LAS+ LEAG MV+N D SKPS S
Sbjct: 284 LASHQLEAGNMVINCDCSKPSKS 306


>sp|Q2F969|RM02_ORYSI 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2
          Length = 502

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           LAS+ LEAG MV+N D SKPS S
Sbjct: 284 LASHQLEAGNMVINCDCSKPSKS 306


>sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa GN=RPL2 PE=2 SV=1
          Length = 502

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           LAS+ LEAG MV+N D SKPS S
Sbjct: 284 LASHQLEAGNMVINCDCSKPSKS 306


>sp|Q9CP21|CCA_PASMU Multifunctional CCA protein OS=Pasteurella
           multocida GN=cca PE=3 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 232 SELCMSYRSHTGTS*ELKSSTLLAIPVRLEGLNIWSRP 345
           +ELC  Y SH   + EL++ T+L +  RL+   +W +P
Sbjct: 303 AELCCEYHSHIHKAFELRAETILKLFNRLD---VWRKP 337


>sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial
           OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2
          Length = 501

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTSFNIANEGRK 87
           LAS  LE G  VMN+  SKPST  N     +K
Sbjct: 286 LASENLEVGNTVMNFHGSKPSTLLNYHQPSQK 317
tr_hit_id Q6YSN2
Definition tr|Q6YSN2|Q6YSN2_BRANA Ribosomal protein L2 OS=Brassica napus
Align length 23
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916247|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_A12.
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6YSN2|Q6YSN2_BRANA Ribosomal protein L2 OS=Brassica napus GN...    35   2.4  
tr|Q5M9S7|Q5M9S7_TOBAC Ribosomal protein L2 OS=Nicotiana tabacum...    35   2.4  
tr|Q40600|Q40600_OENBE 70s mitochondrial ribosomal protein L2 OS...    35   2.4  
tr|B6VJV4|B6VJV4_VITVI Ribosomal protein L2 OS=Vitis vinifera GN...    35   2.4  
tr|A5BK62|A5BK62_VITVI Putative uncharacterized protein OS=Vitis...    35   2.4  
tr|O80781|O80781_ARATH Putative non-LTR retroelement reverse tra...    34   3.2  
tr|A0MER7|A0MER7_ARATH Putative uncharacterized protein (Fragmen...    34   3.2  
tr|Q1XGA1|Q1XGA1_PHYPA Ribosomal protein L2 OS=Physcomitrella pa...    34   4.1  
tr|B0BLF2|B0BLF2_CYCTA Ribosomal protein L2 OS=Cycas taitungensi...    33   9.2  

>tr|Q6YSN2|Q6YSN2_BRANA Ribosomal protein L2 OS=Brassica napus
           GN=rpl2 PE=4 SV=1
          Length = 349

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           +AS+ LEAG+MVMN D SKPSTS
Sbjct: 310 IASHQLEAGKMVMNCDWSKPSTS 332


>tr|Q5M9S7|Q5M9S7_TOBAC Ribosomal protein L2 OS=Nicotiana tabacum
           GN=rpl2 PE=4 SV=1
          Length = 331

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           +AS+ LEAG+MVMN D SKPSTS
Sbjct: 297 IASHQLEAGKMVMNCDWSKPSTS 319


>tr|Q40600|Q40600_OENBE 70s mitochondrial ribosomal protein L2
           OS=Oenothera bertiana GN=rp12 PE=4 SV=1
          Length = 332

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           +AS+ LEAG+MVMN D SKPSTS
Sbjct: 298 IASHQLEAGKMVMNCDWSKPSTS 320


>tr|B6VJV4|B6VJV4_VITVI Ribosomal protein L2 OS=Vitis vinifera
           GN=rpl2 PE=4 SV=1
          Length = 334

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           +AS+ LEAG+MVMN D SKPSTS
Sbjct: 300 IASHQLEAGKMVMNCDWSKPSTS 322


>tr|A5BK62|A5BK62_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029794 PE=4 SV=1
          Length = 336

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTS 114
           +AS+ LEAG+MVMN D SKPSTS
Sbjct: 302 IASHQLEAGKMVMNCDWSKPSTS 324


>tr|O80781|O80781_ARATH Putative non-LTR retroelement reverse
           transcriptase (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At2g34320 PE=2 SV=1
          Length = 292

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 400 PRIARDACRQYRNYSVQPKASTKCSGPPIEQGLQAKWRI*VLKKYPCETYSSCTVQKP 227
           P + R A   +  +S + +   K SGP +E+ L  +W+    +   C T ++  ++ P
Sbjct: 101 PEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENP 158


>tr|A0MER7|A0MER7_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 293

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 400 PRIARDACRQYRNYSVQPKASTKCSGPPIEQGLQAKWRI*VLKKYPCETYSSCTVQKP 227
           P + R A   +  +S + +   K SGP +E+ L  +W+    +   C T ++  ++ P
Sbjct: 101 PEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENP 158


>tr|Q1XGA1|Q1XGA1_PHYPA Ribosomal protein L2 OS=Physcomitrella
           patens GN=rpl2 PE=4 SV=1
          Length = 463

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/25 (72%), Positives = 20/25 (80%)
 Frame = -1

Query: 182 LASY*LEAGRMVMNYD*SKPSTSFN 108
           LAS  LEAG+ VMN D SKPSTSF+
Sbjct: 229 LASDQLEAGKTVMNCDWSKPSTSFD 253


>tr|B0BLF2|B0BLF2_CYCTA Ribosomal protein L2 OS=Cycas taitungensis
           GN=rpl2 PE=4 SV=1
          Length = 477

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -1

Query: 161 AGRMVMNYD*SKPSTSFN 108
           AG+MVMN D SKPSTSFN
Sbjct: 260 AGKMVMNCDWSKPSTSFN 277