BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916255|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_C02.
         (324 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster ...    31   2.2  
sp|Q3B7U2|TAF1A_RAT TATA box-binding protein-associated factor R...    29   6.3  

>sp|P22265|TSH_DROME Protein teashirt OS=Drosophila melanogaster
           GN=tsh PE=1 SV=2
          Length = 954

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 324 SDRGTEPVEAMSDITYGGSDGAGSSEPMET 235
           +D   +P+E MSDI  GG+ G G+ E M +
Sbjct: 262 NDLVVDPLEKMSDIVKGGASGMGTKEKMHS 291


>sp|Q3B7U2|TAF1A_RAT TATA box-binding protein-associated factor RNA
           polymerase I subunit A OS=Rattus norvegicus GN=Taf1a
           PE=2 SV=1
          Length = 453

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 11/44 (25%)
 Frame = +3

Query: 123 EDVPHVTRY-QTRLHVTWYQSHLH----------EFASTTHCCL 221
           ED P  + + +TR+H  W Q H+           +FA TT  CL
Sbjct: 16  EDNPETSEFSKTRMHFPWLQKHIEAVVTGGKKRKDFAQTTSACL 59

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916255|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_C02.
         (324 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3ZP54|Q3ZP54_9ABAC Lef-8 (Fragment) OS=Peridroma margaritosa...    34   4.1  

>tr|Q3ZP54|Q3ZP54_9ABAC Lef-8 (Fragment) OS=Peridroma margaritosa
           nucleopolyhedrovirus PE=4 SV=1
          Length = 226

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 66  PQEYQNXXXXXXXLQPKNCEDVPHVTRYQTRLHVTWYQSHLHEFAST 206
           P EY N       +      + PHV+   ++L   +YQ+HL+ FA+T
Sbjct: 114 PYEYHNPESVLRQVSGLRVRETPHVSHLMSKLLQYYYQNHLNMFATT 160