BP916262
Clone id YMU001_000085_C12
Library
Length 105
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000085_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GTGTGTCATCAGTCTTGAGCCTGGGCCTGTGGAGCTTCCTGGTACTGCCATTGTCATTGT
GAGTATAAAGGAACCTAGTAGAGTCTACTCTGGTGACATGGGAGT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916262|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_C12.
(105 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A9RN88
Definition tr|A9RN88|A9RN88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 47.8
E-value 0.0003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916262|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_C12.
(105 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RN88|A9RN88_PHYPA Predicted protein OS=Physcomitrella paten... 48 3e-04
tr|A9TR39|A9TR39_PHYPA Predicted protein OS=Physcomitrella paten... 47 4e-04
tr|A7Q3L8|A7Q3L8_VITVI Chromosome chr13 scaffold_48, whole genom... 35 2.5
tr|A5C9V5|A5C9V5_VITVI Putative uncharacterized protein OS=Vitis... 35 2.5
tr|A9PF20|A9PF20_POPTR Putative uncharacterized protein OS=Popul... 33 9.5

>tr|A9RN88|A9RN88_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_116967 PE=4 SV=1
Length = 488

Score = 47.8 bits (112), Expect = 3e-04
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +2

Query: 2 CVISLEPGPVELPGTAIVIVSIKEPSRVYSGDMG 103
CVI+L+ GP ELPGTA VIV ++E R +SGD+G
Sbjct: 86 CVITLDAGPEELPGTANVIVEVEEAKRPFSGDLG 119


>tr|A9TR39|A9TR39_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_224626 PE=4 SV=1
Length = 471

Score = 47.4 bits (111), Expect = 4e-04
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +2

Query: 2 CVISLEPGPVELPGTAIVIVSIKEPSRVYSGDMG 103
CVI+L+ GP ELPGTA VI+ ++E R++SGD+G
Sbjct: 69 CVITLDAGPQELPGTANVILEVEEVKRLFSGDLG 102


>tr|A7Q3L8|A7Q3L8_VITVI Chromosome chr13 scaffold_48, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029336001
PE=4 SV=1
Length = 464

Score = 34.7 bits (78), Expect = 2.5
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2

Query: 8 ISLEPGPVELPGTAIVIVSIKEPSRVYSGDMG 103
I+L+ GP ELPGT VIV + E +GD+G
Sbjct: 68 ITLDCGPPELPGTVNVIVDVVETKNPLTGDLG 99


>tr|A5C9V5|A5C9V5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041873 PE=4 SV=1
Length = 564

Score = 34.7 bits (78), Expect = 2.5
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2

Query: 8 ISLEPGPVELPGTAIVIVSIKEPSRVYSGDMG 103
I+L+ GP ELPGT VIV + E +GD+G
Sbjct: 138 ITLDCGPPELPGTVNVIVDVVETKNPLTGDLG 169


>tr|A9PF20|A9PF20_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 519

Score = 32.7 bits (73), Expect = 9.5
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2

Query: 8 ISLEPGPVELPGTAIVIVSIKEPSRVYSGDMG 103
I+++ GP ELPGTA VIV + E G++G
Sbjct: 123 ITIDSGPPELPGTANVIVDVVETKSPLLGEIG 154