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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916268
Clone id YMU001_000085_D12
Library
Length 300
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000085_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCGAATGGAGAGCTTGAAGGCAAGGGAAGAGGTTGCCATAAGGCAAGCA
GAAGCTGAGGCAGAGCGCATAGGTATTGGGGTCACAGCTGAGGCTCAAGATATTTTTGAT
GCCTTATCCAAAACGCTACCTGTCCGTTGGGACAACACAATAATAGTTGTGATGAACGAG
GTGCGTGTGAGTAGTCCTTACTATCCAGAGAATGTTGCATGAGGACCACCAGCTGCCAAT
GAGCGAGTGAGGAAAGTTCTGGAATTGGAACGGAAAAGGCTTCATGCTCGAGGGGCCACC
■■Homology search results ■■ -
sp_hit_id Q5RAT5
Definition sp|Q5RAT5|LSM12_PONAB Protein LSM12 homolog OS=Pongo abelii
Align length 56
Score (bit) 38.5
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916268|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_D12.
         (283 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RAT5|LSM12_PONAB Protein LSM12 homolog OS=Pongo abelii GN=L...    39   0.010
sp|Q9D0R8|LSM12_MOUSE Protein LSM12 homolog OS=Mus musculus GN=L...    39   0.010
sp|Q3MHD2|LSM12_HUMAN Protein LSM12 homolog OS=Homo sapiens GN=L...    39   0.010
sp|Q0VCF9|LSM12_BOVIN Protein LSM12 homolog OS=Bos taurus GN=LSM...    39   0.010
sp|Q6PBA2|LS12A_DANRE Protein LSM12 homolog A OS=Danio rerio GN=...    38   0.014
sp|Q5ZML5|LSM12_CHICK Protein LSM12 homolog OS=Gallus gallus GN=...    38   0.018
sp|Q6NSN1|LS12B_DANRE Protein LSM12 homolog B OS=Danio rerio GN=...    38   0.018
sp|Q6GP89|LSM12_XENLA Protein LSM12 homolog OS=Xenopus laevis GN...    35   0.15 
sp|P38828|LSM12_YEAST Protein LSM12 OS=Saccharomyces cerevisiae ...    33   0.57 
sp|Q9VYR0|LS12A_DROME Protein LSM12 homolog A OS=Drosophila mela...    33   0.57 
sp|Q6P833|LSM12_XENTR Protein LSM12 homolog OS=Xenopus tropicali...    32   1.3  

>sp|Q5RAT5|LSM12_PONAB Protein LSM12 homolog OS=Pongo abelii
           GN=LSM12 PE=2 SV=1
          Length = 195

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  EAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           E Q +F  + KT+   +W    IVVM EV ++ PY  EN      +A   VRK++E
Sbjct: 112 EGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167


>sp|Q9D0R8|LSM12_MOUSE Protein LSM12 homolog OS=Mus musculus
           GN=Lsm12 PE=1 SV=1
          Length = 195

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  EAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           E Q +F  + KT+   +W    IVVM EV ++ PY  EN      +A   VRK++E
Sbjct: 112 EGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167


>sp|Q3MHD2|LSM12_HUMAN Protein LSM12 homolog OS=Homo sapiens
           GN=LSM12 PE=1 SV=2
          Length = 195

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  EAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           E Q +F  + KT+   +W    IVVM EV ++ PY  EN      +A   VRK++E
Sbjct: 112 EGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167


>sp|Q0VCF9|LSM12_BOVIN Protein LSM12 homolog OS=Bos taurus GN=LSM12
           PE=2 SV=2
          Length = 195

 Score = 38.5 bits (88), Expect = 0.010
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  EAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           E Q +F  + KT+   +W    IVVM EV ++ PY  EN      +A   VRK++E
Sbjct: 112 EGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167


>sp|Q6PBA2|LS12A_DANRE Protein LSM12 homolog A OS=Danio rerio
           GN=lsm12a PE=2 SV=1
          Length = 196

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  EAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           E Q +F  + KT+   +W    I+VM++V +S PY  EN      +A   +RK++E
Sbjct: 113 EGQQLFQTIHKTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVE 168


>sp|Q5ZML5|LSM12_CHICK Protein LSM12 homolog OS=Gallus gallus
           GN=LSM12 PE=2 SV=1
          Length = 194

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  EAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           E Q +F  + KT+   +W    IVVM EV ++ PY  EN      +A   VRK++E
Sbjct: 111 EGQQLFQTIHKTIKDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVE 166


>sp|Q6NSN1|LS12B_DANRE Protein LSM12 homolog B OS=Danio rerio
           GN=lsm12b PE=2 SV=1
          Length = 196

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           + E Q +F  + KT+   +W    I+VM++V +S PY  +N      +A   VRK++E
Sbjct: 111 SVEGQQLFQTIHKTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVE 168


>sp|Q6GP89|LSM12_XENLA Protein LSM12 homolog OS=Xenopus laevis
           GN=lsm12 PE=2 SV=1
          Length = 194

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 83  EAQDIFDALSKTLP-VRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLE 247
           + Q +F  + KT+   +W    IVVM+EV +S PY  EN       A   V K++E
Sbjct: 111 DGQQLFQTIHKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVE 166


>sp|P38828|LSM12_YEAST Protein LSM12 OS=Saccharomyces cerevisiae
           GN=LSM12 PE=1 SV=1
          Length = 187

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTL-PVRWDNTIIVVMNEVRVSSPYYPENV 199
           +AE Q IFD + KT+   +W    I+++++V+V  PY  E++
Sbjct: 112 SAEGQFIFDQIFKTIGDTKWVAKDIIILDDVKVQPPYKVEDI 153


>sp|Q9VYR0|LS12A_DROME Protein LSM12 homolog A OS=Drosophila
           melanogaster GN=CG15735 PE=1 SV=2
          Length = 217

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 83  EAQDIFDALSKTL---PVRWDNTIIVVMNEVRVSSPYYPENV 199
           EAQ+++ A++K      V W    I ++NEV +S PY  +NV
Sbjct: 118 EAQELYRAIAKQYGYNEVSWQGLNIQILNEVTISPPYRVDNV 159
tr_hit_id A7Q2I7
Definition tr|A7Q2I7|A7Q2I7_VITVI Chromosome chr1 scaffold_46, whole genome shotgun sequence OS=Vitis vinifera
Align length 68
Score (bit) 108.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916268|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_D12.
         (283 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q2I7|A7Q2I7_VITVI Chromosome chr1 scaffold_46, whole genome...   108   2e-22
tr|A9P275|A9P275_PICSI Putative uncharacterized protein OS=Picea...   102   1e-20
tr|B4FKI8|B4FKI8_MAIZE Putative uncharacterized protein OS=Zea m...   100   6e-20
tr|Q6Z7R6|Q6Z7R6_ORYSJ Os02g0741900 protein OS=Oryza sativa subs...    99   1e-19
tr|B8AIE2|B8AIE2_ORYSI Putative uncharacterized protein OS=Oryza...    99   1e-19
tr|B4FV97|B4FV97_MAIZE Putative uncharacterized protein OS=Zea m...    98   2e-19
tr|B4FJ97|B4FJ97_MAIZE Putative uncharacterized protein OS=Zea m...    98   2e-19
tr|A9RZZ6|A9RZZ6_PHYPA Predicted protein OS=Physcomitrella paten...    97   5e-19
tr|B6TDI6|B6TDI6_MAIZE Putative uncharacterized protein OS=Zea m...    95   2e-18
tr|A3AB88|A3AB88_ORYSJ Putative uncharacterized protein OS=Oryza...    92   1e-17
tr|Q9LR90|Q9LR90_ARATH T23E23.20 OS=Arabidopsis thaliana PE=4 SV=1     86   7e-16
tr|Q8L466|Q8L466_ARATH At1g24050/T23E23_11 OS=Arabidopsis thalia...    86   7e-16
tr|A9RCK5|A9RCK5_PHYPA Predicted protein OS=Physcomitrella paten...    78   2e-13
tr|Q0CKD4|Q0CKD4_ASPTN Putative uncharacterized protein OS=Asper...    75   2e-12
tr|A1CTD0|A1CTD0_ASPCL Putative uncharacterized protein OS=Asper...    73   6e-12
tr|A2QVN3|A2QVN3_ASPNC Similarity to hypothetical protein T23E23...    72   2e-11
tr|B6Q9T7|B6Q9T7_PENMA Putative uncharacterized protein OS=Penic...    70   4e-11
tr|B8M377|B8M377_9EURO Putative uncharacterized protein OS=Talar...    70   7e-11
tr|Q00WL9|Q00WL9_OSTTA [S] KOG4401 Uncharacterized conserved pro...    69   1e-10
tr|Q4WN04|Q4WN04_ASPFU Putative uncharacterized protein OS=Asper...    69   1e-10
tr|Q2UM67|Q2UM67_ASPOR Predicted protein OS=Aspergillus oryzae G...    69   1e-10
tr|B8N4I1|B8N4I1_ASPFL Putative uncharacterized protein OS=Asper...    69   1e-10
tr|B0Y7J8|B0Y7J8_ASPFC Putative uncharacterized protein OS=Asper...    69   1e-10
tr|A1DMK8|A1DMK8_NEOFI Putative uncharacterized protein OS=Neosa...    69   1e-10
tr|Q1E8F9|Q1E8F9_COCIM Putative uncharacterized protein OS=Cocci...    69   2e-10
tr|A6RA97|A6RA97_AJECN Putative uncharacterized protein OS=Ajell...    68   3e-10
tr|Q55BQ9|Q55BQ9_DICDI Putative uncharacterized protein OS=Dicty...    67   6e-10
tr|B6H0R2|B6H0R2_PENCH Pc12g10540 protein OS=Penicillium chrysog...    66   1e-09
tr|A4S6Y1|A4S6Y1_OSTLU Predicted protein OS=Ostreococcus lucimar...    65   2e-09
tr|A8ICM2|A8ICM2_CHLRE Predicted protein OS=Chlamydomonas reinha...    51   3e-05

>tr|A7Q2I7|A7Q2I7_VITVI Chromosome chr1 scaffold_46, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028900001
           PE=4 SV=1
          Length = 157

 Score =  108 bits (269), Expect = 2e-22
 Identities = 55/68 (80%), Positives = 59/68 (86%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T EAQ+IFDALSKTLPVRWD T IVVMNEVRVSSPY PE+V+ G PAANERV+KVLE ER
Sbjct: 88  TVEAQNIFDALSKTLPVRWDKTAIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEFER 147

Query: 257 KRLHARGA 280
           KRL AR A
Sbjct: 148 KRLQARVA 155


>tr|A9P275|A9P275_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 181

 Score =  102 bits (253), Expect = 1e-20
 Identities = 49/69 (71%), Positives = 59/69 (85%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T+E Q IFDAL+KTLPV+W+ T IVV+N+VRVSSPY PENV+ G PAAN+RV+KVLELER
Sbjct: 109 TSEGQSIFDALAKTLPVQWEKTTIVVVNDVRVSSPYLPENVSGGTPAANDRVKKVLELER 168

Query: 257 KRLHARGAT 283
           KRL AR  +
Sbjct: 169 KRLQARNTS 177


>tr|B4FKI8|B4FKI8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 182

 Score = 99.8 bits (247), Expect = 6e-20
 Identities = 49/66 (74%), Positives = 56/66 (84%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T EAQ+IFDALSKTLPV+WD T IVVM EVRV SPY PENV+ G  AANERV+KV++ ER
Sbjct: 111 TPEAQNIFDALSKTLPVQWDKTDIVVMKEVRVRSPYLPENVSGGTAAANERVKKVIDFER 170

Query: 257 KRLHAR 274
           KRLH+R
Sbjct: 171 KRLHSR 176


>tr|Q6Z7R6|Q6Z7R6_ORYSJ Os02g0741900 protein OS=Oryza sativa subsp.
           japonica GN=P0516G10.33 PE=2 SV=1
          Length = 181

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 49/66 (74%), Positives = 54/66 (81%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T EAQ IFDALSKTLPV+WD T IVVM EVRV +PY PENV+ G  AANERV+KVL+ ER
Sbjct: 111 TPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVCNPYLPENVSGGTSAANERVKKVLDFER 170

Query: 257 KRLHAR 274
           KRLH R
Sbjct: 171 KRLHVR 176


>tr|B8AIE2|B8AIE2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08889 PE=4 SV=1
          Length = 192

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 49/66 (74%), Positives = 54/66 (81%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T EAQ IFDALSKTLPV+WD T IVVM EVRV +PY PENV+ G  AANERV+KVL+ ER
Sbjct: 122 TPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVCNPYLPENVSGGTSAANERVKKVLDFER 181

Query: 257 KRLHAR 274
           KRLH R
Sbjct: 182 KRLHVR 187


>tr|B4FV97|B4FV97_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 91

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 49/66 (74%), Positives = 54/66 (81%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T EAQ IFDALSKTLPV+WD T IVVM EVRV SPY PENV  G  AANERV+KV++ ER
Sbjct: 20  TPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVRSPYLPENVNGGTAAANERVKKVIDFER 79

Query: 257 KRLHAR 274
           KRLH+R
Sbjct: 80  KRLHSR 85


>tr|B4FJ97|B4FJ97_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 182

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 49/66 (74%), Positives = 54/66 (81%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T EAQ IFDALSKTLPV+WD T IVVM EVRV SPY PENV  G  AANERV+KV++ ER
Sbjct: 111 TPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVRSPYLPENVNGGTAAANERVKKVIDFER 170

Query: 257 KRLHAR 274
           KRLH+R
Sbjct: 171 KRLHSR 176


>tr|A9RZZ6|A9RZZ6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_207347 PE=4 SV=1
          Length = 180

 Score = 96.7 bits (239), Expect = 5e-19
 Identities = 49/67 (73%), Positives = 53/67 (79%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           + EAQDIFDALSKTLP RWD T I+VMN+V V  PY PE+V  G PAANERVRKVLE ER
Sbjct: 111 STEAQDIFDALSKTLPCRWDKTTILVMNDVFVKHPYIPESVIGGAPAANERVRKVLEEER 170

Query: 257 KRLHARG 277
           KRL  RG
Sbjct: 171 KRLQNRG 177


>tr|B6TDI6|B6TDI6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 182

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 48/66 (72%), Positives = 53/66 (80%)
 Frame = +2

Query: 77  TAEAQDIFDALSKTLPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKVLELER 256
           T EAQ IFDALSKTLPV+WD T IVVM EVRV SP  PENV  G  AANERV+KV++ ER
Sbjct: 111 TPEAQSIFDALSKTLPVQWDKTDIVVMKEVRVRSPXLPENVNGGTAAANERVKKVIDFER 170

Query: 257 KRLHAR 274
           KRLH+R
Sbjct: 171 KRLHSR 176


>tr|A3AB88|A3AB88_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008060 PE=4 SV=1
          Length = 197

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 49/71 (69%), Positives = 54/71 (76%), Gaps = 5/71 (7%)
 Frame = +2

Query: 77  TAEAQDIFDALSKT-----LPVRWDNTIIVVMNEVRVSSPYYPENVA*GPPAANERVRKV 241
           T EAQ IFDALSKT     LPV+WD T IVVM EVRV +PY PENV+ G  AANERV+KV
Sbjct: 122 TPEAQSIFDALSKTYILLRLPVQWDKTDIVVMKEVRVCNPYLPENVSGGTSAANERVKKV 181

Query: 242 LELERKRLHAR 274
           L+ ERKRLH R
Sbjct: 182 LDFERKRLHVR 192