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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916280
Clone id YMU001_000085_G10
Library
Length 365
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000085_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGATGAATCATGAAGTGTGGCAGCATGCACGTAACAGAAACATCCAGGATGCAGGCGGGA
CCTTTCCTATTTACGTTGAGAGCGAAGGAATAAGTAAAACCGTGTAAGTATGTGTGTTGA
AGTGAAGAGTACACAAGTGGATTCTTGGCCCACGTCCAGTAGAAGCAAATGGATAATTGG
GAGGTGAATTAACATTGGCACCATGTCTTGTATGTGTTTGTGTTGATGTGGAAGTTTGAG
GAAATCAGGTTTCAAGAGAAGCGGATCTCAATTAAGACTTGAAGCAAAAGCGGCAGAATA
TGACGCATTTCGGTATAAAAGAGATATAAACTCTTCCAAACCTGAGGGGCTCTGGCTGTG
TCCTC
■■Homology search results ■■ -
sp_hit_id Q6H1V1
Definition sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus
Align length 52
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916280|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_G10.
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2...    29   6.4  
sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2...    29   6.4  
sp|Q58493|Y1093_METJA Uncharacterized protein MJ1093 OS=Methanoc...    29   8.4  
sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus mu...    29   8.4  

>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2
           SV=1
          Length = 669

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 218 NTYKTWCQC*FTSQLSICFYWTWAKNPLVYSSLQHTYLHGFTYSFALNVNRK 63
           N Y++WC        S+ F + W   PLVY+  Q   L  +T+ FA  + R+
Sbjct: 215 NRYRSWC--------SLLFGYDWVGIPLVYT--QVVTLAVYTFFFACLIGRQ 256


>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2
           SV=1
          Length = 668

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 218 NTYKTWCQC*FTSQLSICFYWTWAKNPLVYSSLQHTYLHGFTYSFALNVNRK 63
           N Y++WC        S+ F + W   PLVY+  Q   L  +T+ FA  + R+
Sbjct: 215 NRYRSWC--------SLLFGYDWVGIPLVYT--QVVTLAVYTFFFACLIGRQ 256


>sp|Q58493|Y1093_METJA Uncharacterized protein MJ1093
           OS=Methanocaldococcus jannaschii GN=MJ1093 PE=3 SV=1
          Length = 300

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 343 RFGRVYISFIPKCVIFCRFCFKS 275
           + GRV++   P+C I C+FC +S
Sbjct: 26  KVGRVHLPVAPRCNIACKFCRRS 48


>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus
           musculus GN=Nmd3 PE=2 SV=1
          Length = 503

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -1

Query: 365 EDTARAPQVWKSLYLFYTEMRHILPLL--LQVLIEIRF--S*NLISSNFHINTNTYKT 204
           ++T R  ++   L  +Y+  +H   ++  LQ ++  R+  S  LIS + H NT  YK+
Sbjct: 183 QNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKS 240
tr_hit_id B5T2M5
Definition tr|B5T2M5|B5T2M5_9HYME ATP synthase subunit 8 OS=Nasonia longicornis
Align length 51
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916280|Adiantum capillus-veneris mRNA, clone:
YMU001_000085_G10.
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5T2M5|B5T2M5_9HYME ATP synthase subunit 8 OS=Nasonia longico...    33   7.1  
tr|B5T2M1|B5T2M1_9HYME ATP synthase subunit 8 OS=Nasonia longico...    33   7.1  
tr|B5T2K9|B5T2K9_9HYME ATP synthase subunit 8 OS=Nasonia longico...    33   7.1  
tr|B5T2L3|B5T2L3_9HYME ATP synthase subunit 8 OS=Nasonia longico...    33   9.3  

>tr|B5T2M5|B5T2M5_9HYME ATP synthase subunit 8 OS=Nasonia
           longicornis GN=atp8 PE=4 SV=1
          Length = 55

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 350 APQVWKSLYLFYTEMRHILPLLLQVL-IEIRFS*NLISSNFHINTNTYKTW 201
           +P +W SLY+++  M  I  LLL  L I I    NLI +N + N   +  W
Sbjct: 5   SPMMWLSLYIYFIMMLMISLLLLYYLFININIKLNLIDNNNNNNNIFFNKW 55


>tr|B5T2M1|B5T2M1_9HYME ATP synthase subunit 8 OS=Nasonia
           longicornis GN=atp8 PE=4 SV=1
          Length = 56

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 350 APQVWKSLYLFYTEMRHILPLLLQVL-IEIRFS*NLISSNFHINTNTY 210
           +P +W SLY+++  M  I  LLL  L I I    NLI +N + N N +
Sbjct: 5   SPMMWLSLYIYFIMMLMISLLLLYYLFININIKFNLIDNNNNNNNNIF 52


>tr|B5T2K9|B5T2K9_9HYME ATP synthase subunit 8 OS=Nasonia
           longicornis GN=atp8 PE=4 SV=1
          Length = 55

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 350 APQVWKSLYLFYTEMRHILPLLLQVL-IEIRFS*NLISSNFHINTNTYKTW 201
           +P +W SLY+++  M  I  LLL  L I I    NLI +N + N   +  W
Sbjct: 5   SPMMWLSLYIYFIMMLMISLLLLYYLFININIKFNLIDNNNNNNNIFFNKW 55


>tr|B5T2L3|B5T2L3_9HYME ATP synthase subunit 8 OS=Nasonia
           longicornis GN=atp8 PE=4 SV=1
          Length = 56

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 350 APQVWKSLYLFYTEMRHILPLLLQVL-IEIRFS*NLISSNFHINTNTY 210
           +P +W SLY+++  M  I  LLL  L I I    NL+ +N + N N +
Sbjct: 5   SPMMWLSLYIYFIMMLMISLLLLYYLFININIKFNLVDNNNNNNNNIF 52