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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916291
Clone id YMU001_000086_A06
Library
Length 448
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATACTGGCAATGAAGCCATACTTAAGTGCCTTGCTTGATCACATAGTGAAGTGAAACAA
AATGTATCTCATTACAATATGAAACAAGAAGCCTTTACAAGCAACGTGAATAATCCACCT
CAAATTTCAGGTTTTGAAAGTACTCACTTTTGTGCGAGTGAAAGAAAACCATCCATCCCA
CTCTGCTCAGCCTTATCATGGAAACTAATGCCAAAATTGTTTCCACATAACACGATGACA
ACCCATCTCAGATGGTTCGCAGTTCTCAATTTGAAAGGGAAAAAAAAACAAAACTGGTTG
AAAAACTCAATGCCAAATCTGGCCTATACCTTGCCCTCGAGAACACACATCCTTACAGTG
GGCATTTTACACAGCGATTGCTATTAAAGGCTTCCATGACCTCTTCTTAACTATCTGCAA
ATTTACACCTTTCGGCAAGAAGCCCCGC
■■Homology search results ■■ -
sp_hit_id P28824
Definition sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis
Align length 43
Score (bit) 32.3
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916291|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_A06.
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis GN=nrp1 PE=2...    32   0.93 
sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit ...    31   2.1  
sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2           29   8.0  
sp|Q694C5|ABC3G_ERYPA DNA dC->dU-editing enzyme APOBEC-3G OS=Ery...    29   8.0  
sp|Q7YR25|ABC3G_CERAE DNA dC->dU-editing enzyme APOBEC-3G (Fragm...    29   8.0  

>sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis GN=nrp1 PE=2
           SV=1
          Length = 928

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 246 SQMVRSSQFEREKKTKLVEKLNAKSGLYLALENTHPYSGHFTQ 374
           SQ+  SSQ +R    +L   + ++SG  L   NTHPY+  + Q
Sbjct: 445 SQITASSQVDRNWVPELARLVTSRSGWALPPSNTHPYTKEWLQ 487


>sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8
           OS=Drosophila melanogaster GN=CG6488 PE=1 SV=1
          Length = 570

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = +1

Query: 136 ESTHFCASERKPSIPLCSALSWKLMPKL-------FPHNTMTTHL 249
           E   F  SER+  + LCS L++ L+P +       FP  ++T HL
Sbjct: 471 EQQAFAGSEREAFVRLCSCLAYDLVPYIQRCIHGVFPPQSLTVHL 515


>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2
          Length = 34350

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 58    QNVSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLCSALSWKLMPKLFPHNTM 237
             QN+   N+ +E  T +  NP    G E T+F    RKP+    S ++  +  +L   N +
Sbjct: 18933 QNLKVTNVTKENCTISWENPLDNGGSEITNFIVEYRKPNQKGWSIVASDVTKRLIKANLL 18992

Query: 238   TTHLRWFAV 264
               +  +F V
Sbjct: 18993 ANNEYYFRV 19001


>sp|Q694C5|ABC3G_ERYPA DNA dC->dU-editing enzyme APOBEC-3G
           OS=Erythrocebus patas GN=APOBEC3G PE=3 SV=1
          Length = 383

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 43  HSEVKQNVSHYNMKQEAFTSNVNNPPQISGFESTHFC 153
           H+ + + + H  M    FTSN NN P +SG   T+ C
Sbjct: 186 HATLGELLRHV-MDPGTFTSNFNNKPWVSGQRETYLC 221


>sp|Q7YR25|ABC3G_CERAE DNA dC->dU-editing enzyme APOBEC-3G
           (Fragment) OS=Cercopithecus aethiops GN=APOBEC3G PE=1
           SV=1
          Length = 377

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 43  HSEVKQNVSHYNMKQEAFTSNVNNPPQISGFESTHFC 153
           H+ + + + H  M    FTSN NN P +SG   T+ C
Sbjct: 186 HATLGELLRHV-MDPGTFTSNFNNKPWVSGQRETYLC 221
tr_hit_id Q97L30
Definition tr|Q97L30|Q97L30_CLOAB Possible glucanotransferase (Putative endo alpha-1,4 polygalactosaminidase related protein) OS=Clostridium acetobutylicum
Align length 54
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916291|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_A06.
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q97L30|Q97L30_CLOAB Possible glucanotransferase (Putative end...    35   2.4  
tr|A7Q5Y4|A7Q5Y4_VITVI Chromosome chr14 scaffold_54, whole genom...    34   3.2  
tr|Q8I2U1|Q8I2U1_PLAF7 Putative uncharacterized protein PFI1040c...    34   3.2  
tr|A5C5B1|A5C5B1_VITVI Putative uncharacterized protein OS=Vitis...    33   5.5  
tr|Q29M23|Q29M23_DROPS GA19631 OS=Drosophila pseudoobscura pseud...    33   7.2  
tr|B4G6P5|B4G6P5_DROPE GL18564 OS=Drosophila persimilis GN=GL185...    33   7.2  

>tr|Q97L30|Q97L30_CLOAB Possible glucanotransferase (Putative endo
           alpha-1,4 polygalactosaminidase related protein)
           OS=Clostridium acetobutylicum GN=CA_C0736 PE=4 SV=1
          Length = 276

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +3

Query: 180 TLLSLIMETNAKIVST*HDDNPSQMVRSSQFEREKKTKLVEKLNAKSGLYLALE 341
           +L SLI   N + V T  D N ++ +++S+ +R+KK K +EKL +K  L   +E
Sbjct: 192 SLKSLIHGINIESVYTTVDFNNNKFIKNSRDDRDKKVKYLEKLKSKDILIYIVE 245


>tr|A7Q5Y4|A7Q5Y4_VITVI Chromosome chr14 scaffold_54, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031145001
           PE=4 SV=1
          Length = 614

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 64  VSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLC 186
           +S Y  K+++F ++ N  P ISG E     +++RK S P+C
Sbjct: 300 ISTYREKRQSFCNDRNLNPSISGAEQDFLSSAQRKHSTPVC 340


>tr|Q8I2U1|Q8I2U1_PLAF7 Putative uncharacterized protein PFI1040c
           OS=Plasmodium falciparum (isolate 3D7) GN=PFI1040c PE=4
           SV=1
          Length = 2290

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 160 HSHKSEYFQNLKFEVDYSRC-L*RLLVSYCNEIHFVSLHYVIKQGT*VWLHCQY 2
           H + S Y+Q LKF+V YS C     +  Y N+  F ++H +++    V+ + QY
Sbjct: 639 HKNHSLYYQKLKFKVAYSLCHFDDEVTIYSNKESFSNIHILVEYSRLVYKYLQY 692


>tr|A5C5B1|A5C5B1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019534 PE=4 SV=1
          Length = 595

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 64  VSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLC 186
           +S Y  K+++F ++ N  P ISG E     +++RK S P+C
Sbjct: 273 ISTYREKRQSFCNDRNLNPSISGAEQDFLSSAQRKNSNPVC 313


>tr|Q29M23|Q29M23_DROPS GA19631 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA19631 PE=4 SV=2
          Length = 572

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = +1

Query: 19  ILKCLA*SHSEVKQNV-SHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLCSAL 195
           + +CL  S   V Q V + Y  +Q+AFT N                  ER+  + LCS L
Sbjct: 448 VTRCLQQSLQLVAQRVLAFYRQEQQAFTGN------------------ERENFVKLCSCL 489

Query: 196 SWKLMP-------KLFPHNTMTTHL 249
           ++ L+P        +FP  ++T HL
Sbjct: 490 AYDLVPYVQRCIHGIFPPQSLTVHL 514


>tr|B4G6P5|B4G6P5_DROPE GL18564 OS=Drosophila persimilis GN=GL18564
           PE=4 SV=1
          Length = 572

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = +1

Query: 19  ILKCLA*SHSEVKQNV-SHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLCSAL 195
           + +CL  S   V Q V + Y  +Q+AFT N                  ER+  + LCS L
Sbjct: 448 VTRCLQQSLQLVAQRVLAFYRQEQQAFTGN------------------ERENFVKLCSCL 489

Query: 196 SWKLMP-------KLFPHNTMTTHL 249
           ++ L+P        +FP  ++T HL
Sbjct: 490 AYDLVPYVQRCIHGIFPPQSLTVHL 514