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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916293
Clone id YMU001_000086_A08
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGCCGCAGGAATTTCATTGTTTTTAGAGCTTGTGCTCTTGTGACAACTTGTATAGGTAT
CACCGTTTCATTTTCTAAACCACTACTTGACGGGATTGCCTCTAACATGTTCAACGCTAT
TTTTCACCATTTTGTTTGGTTTTATTGGGCAGTCACTAATCAATTGAGTGATGCCACAAT
CTCGATAGTATACATTTACTGTAATTATTTCTGTATAAGGACAATCTCTCATTAGGTGGT
CGTCGATACACTTGTAGCATGGTCCTAATGGTTTGTCGAGGTGCTCCTGGAGCCGCTCTC
TGTTGATAGGCAAGCCTTTGTACTGCTAAGCCACCATTGGCTATGAACAAAAAAATTCTT
TCATCTAGACTGTATATGTCTTCTCCTATAGCATGAGCTATTCTTGGTGGTGCAACATTT
CCAATCATGCTCCA
■■Homology search results ■■ -
sp_hit_id P03344
Definition sp|P03344|GAG_BLVJ Gag polyprotein OS=Bovine leukemia virus (isolate Japanese BLV-1)
Align length 19
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916293|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_A08.
         (419 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03344|GAG_BLVJ Gag polyprotein OS=Bovine leukemia virus (iso...    30   2.9  
sp|P25058|GAG_BLVAU Gag polyprotein OS=Bovine leukemia virus (is...    30   2.9  
sp|P51828|ADCY7_HUMAN Adenylate cyclase type 7 OS=Homo sapiens G...    30   2.9  
sp|O18637|SLY1_DROVI Sly1 protein homolog OS=Drosophila virilis ...    30   4.9  
sp|Q24179|SLY1_DROME Sly1 protein homolog OS=Drosophila melanoga...    30   4.9  
sp|P84149|MEX67_CANAL mRNA export factor MEX67 OS=Candida albica...    29   6.4  
sp|Q9Z2I6|SV2C_RAT Synaptic vesicle glycoprotein 2C OS=Rattus no...    29   8.4  
sp|Q69ZS6|SV2C_MOUSE Synaptic vesicle glycoprotein 2C OS=Mus mus...    29   8.4  
sp|B4JXU2|EI3G2_DROGR Eukaryotic translation initiation factor 3...    29   8.4  

>sp|P03344|GAG_BLVJ Gag polyprotein OS=Bovine leukemia virus
           (isolate Japanese BLV-1) GN=gag PE=1 SV=3
          Length = 392

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 256 PLGPCYKCI-DDHLMRDCP 203
           P GPCY+C+ + H  RDCP
Sbjct: 343 PPGPCYRCLKEGHWARDCP 361


>sp|P25058|GAG_BLVAU Gag polyprotein OS=Bovine leukemia virus
           (isolate Australian) GN=gag PE=1 SV=3
          Length = 392

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 256 PLGPCYKCI-DDHLMRDCP 203
           P GPCY+C+ + H  RDCP
Sbjct: 343 PPGPCYRCLKEGHWARDCP 361


>sp|P51828|ADCY7_HUMAN Adenylate cyclase type 7 OS=Homo sapiens
           GN=ADCY7 PE=2 SV=1
          Length = 1080

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 283 ERLQEHLDKPLGPCYKCIDDHLMRDCPYTEIITVNVYYRDC-GITQLISDCPIKPNKMVK 107
           ERL+EH D+      +C+ D+            V++ Y D  G TQL SDC  K   +V 
Sbjct: 251 ERLKEHGDR------RCMPDNNFHSLYVKRHQNVSILYADIVGFTQLASDCSPKELVVVL 304

Query: 106 NSV 98
           N +
Sbjct: 305 NEL 307


>sp|O18637|SLY1_DROVI Sly1 protein homolog OS=Drosophila virilis
           GN=Slh PE=3 SV=1
          Length = 656

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 41  GITVSFSKPLLDGIASNMFNAIFHHFVWFYWAVTNQLSDATISIVYI 181
           G   SF +P+L  +  NM  A   H  W Y A+ + + D  +++VY+
Sbjct: 239 GGVFSFQRPVLLLLDRNMDLATPLHHTWSYQALVHDVLDLGLNLVYV 285


>sp|Q24179|SLY1_DROME Sly1 protein homolog OS=Drosophila
           melanogaster GN=Slh PE=2 SV=3
          Length = 657

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 41  GITVSFSKPLLDGIASNMFNAIFHHFVWFYWAVTNQLSDATISIVYI 181
           G   SF +P+L  +  NM  A   H  W Y A+ + + D  +++VY+
Sbjct: 239 GGVFSFQRPVLLLLDRNMDLATPLHHTWSYQALVHDVLDLGLNLVYV 285


>sp|P84149|MEX67_CANAL mRNA export factor MEX67 OS=Candida albicans
           GN=MEX67 PE=1 SV=2
          Length = 617

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 260 QTIRTMLQVYRRPPNERLSLYRNNYSKCILSRLWHHSID 144
           QT+ +M Q +  P  + LSL  NN++K  +   W H ++
Sbjct: 200 QTLTSMAQTF--PKLQNLSLQNNNFTKIKVFETWRHKLN 236


>sp|Q9Z2I6|SV2C_RAT Synaptic vesicle glycoprotein 2C OS=Rattus
           norvegicus GN=Sv2c PE=1 SV=1
          Length = 727

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 253 LGPCYKCID--DHLMRDCPYTEIITVNVYYRDCG-ITQLISDCPIKPNKMVKNSVEH 92
           LG  +K +   D + + C + ++ +VN Y+++C  I  L  +   +P K + +  ++
Sbjct: 503 LGVKFKSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFENTDFEPYKFIDSEFQN 559


>sp|Q69ZS6|SV2C_MOUSE Synaptic vesicle glycoprotein 2C OS=Mus
           musculus GN=Sv2c PE=1 SV=2
          Length = 727

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 253 LGPCYKCID--DHLMRDCPYTEIITVNVYYRDCG-ITQLISDCPIKPNKMVKNSVEH 92
           LG  +K +   D + + C + ++ +VN Y+++C  I  L  +   +P K + +  ++
Sbjct: 503 LGVKFKSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFDNTDFEPYKFIDSEFQN 559


>sp|B4JXU2|EI3G2_DROGR Eukaryotic translation initiation factor 3
           subunit G-2 OS=Drosophila grimshawi GN=eIF3-S4-2 PE=3
           SV=1
          Length = 260

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -2

Query: 283 ERLQEHLD--KPLGPCYKCIDDHLMRDCPY 200
           E   +HLD  KP+  C  C  DH    CPY
Sbjct: 104 EHAHDHLDGNKPMAKCRICNGDHWSVKCPY 133
tr_hit_id A0YTT5
Definition tr|A0YTT5|A0YTT5_9CYAN Cytosine-specific methyltransferase OS=Lyngbya sp. PCC 8106
Align length 26
Score (bit) 36.2
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916293|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_A08.
         (419 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0YTT5|A0YTT5_9CYAN Cytosine-specific methyltransferase OS=Ly...    36   0.83 
tr|B2B822|B2B822_PODAN Predicted CDS Pa_2_13040 OS=Podospora ans...    36   1.1  
tr|A2H6J3|A2H6J3_TRIVA Putative uncharacterized protein OS=Trich...    34   4.1  
tr|A2ES84|A2ES84_TRIVA Putative uncharacterized protein OS=Trich...    34   4.1  
tr|A7HDU1|A7HDU1_ANADF Acetylornithine and succinylornithine ami...    33   5.4  
tr|Q4Y0K7|Q4Y0K7_PLACH Putative uncharacterized protein OS=Plasm...    33   5.4  
tr|Q4XCG6|Q4XCG6_PLACH Putative uncharacterized protein (Fragmen...    33   5.4  
tr|B3L264|B3L264_PLAKH Putative uncharacterized protein OS=Plasm...    33   5.4  
tr|A5KDZ5|A5KDZ5_PLAVI Putative uncharacterized protein OS=Plasm...    33   9.2  

>tr|A0YTT5|A0YTT5_9CYAN Cytosine-specific methyltransferase
           OS=Lyngbya sp. PCC 8106 GN=L8106_13270 PE=3 SV=1
          Length = 384

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 16/26 (61%), Positives = 17/26 (65%)
 Frame = -1

Query: 419 WSMIGNVAPPRIAHAIGEDIYSLDER 342
           W  IGN  PP  A AIGE I SLDE+
Sbjct: 326 WRQIGNAVPPLFAKAIGEGILSLDEQ 351


>tr|B2B822|B2B822_PODAN Predicted CDS Pa_2_13040 OS=Podospora
           anserina PE=4 SV=1
          Length = 479

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 259 KPLGPCYKCIDD-HLMRDCPYTEIITVNVYYRDCGITQ-LISDCPIKPNKMVKNSVE 95
           KPLG C +C D+ H  +DCP    +T N     CG T+ L  +CP     + KN  E
Sbjct: 82  KPLGACRRCGDEGHYSKDCPTAGPMTCNA----CGSTEHLRKECPDAGPMLCKNCGE 134


>tr|A2H6J3|A2H6J3_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_539730 PE=4 SV=1
          Length = 244

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 225 SSIHL*HGPNGLSRCSWSRSLLIGKPLYC*ATIGYEQKNSF 347
           SSI +  G  GL+ C+ SR+ LIG  +YC  ++ ++ K +F
Sbjct: 66  SSIRISKGTAGLTYCNASRNTLIGNTVYCILSMDFQTKVNF 106


>tr|A2ES84|A2ES84_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_194130 PE=4 SV=1
          Length = 244

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 225 SSIHL*HGPNGLSRCSWSRSLLIGKPLYC*ATIGYEQKNSF 347
           SSI +  G  GL+ C+ SR+ LIG  +YC  ++ ++ K +F
Sbjct: 66  SSIRISKGTAGLTYCNASRNTLIGNTVYCILSMDFQTKVNF 106


>tr|A7HDU1|A7HDU1_ANADF Acetylornithine and succinylornithine
           aminotransferase OS=Anaeromyxobacter sp. (strain
           Fw109-5) GN=Anae109_2686 PE=3 SV=1
          Length = 402

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = -1

Query: 386 IAHAIGEDIYSLDERIFLFIANGGLAVQRLAYQQRAAPGAP 264
           I +AIGED+  L   + L  A   LAV+RLA    AAP  P
Sbjct: 362 IVNAIGEDVLRLAPPLTLTAAEADLAVERLAAAIAAAPAKP 402


>tr|Q4Y0K7|Q4Y0K7_PLACH Putative uncharacterized protein
           OS=Plasmodium chabaudi GN=PC000129.02.0 PE=4 SV=1
          Length = 404

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 14  ACALVTTCIGITVSFSKPLLDGIASNMFNAIFHHFVWFYWAVTNQLS 154
           AC+L+  C+G  + F+K +L  +A  M + I +  +  YW     LS
Sbjct: 127 ACSLIVMCVGWNILFTKNILISMACFMLSFIINGGIGTYWYYETDLS 173


>tr|Q4XCG6|Q4XCG6_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC301519.00.0 PE=4 SV=1
          Length = 279

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 14  ACALVTTCIGITVSFSKPLLDGIASNMFNAIFHHFVWFYWAVTNQLS 154
           AC+L+  C+G  + F+K +L  +A  M + I +  +  YW     LS
Sbjct: 91  ACSLIVMCVGWNILFTKNILISMACFMLSFIINGGIGTYWYYETDLS 137


>tr|B3L264|B3L264_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_061450 PE=4
           SV=1
          Length = 437

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  ACALVTTCIGITVSFSKPLLDGIASNMFNAIFHHFVWFYWAVTNQLS 154
           +C L+  CIG  + FSK +L  +A  M + I +  +  YW     LS
Sbjct: 152 SCTLIILCIGWNILFSKSILISMACFMLSFIINGGIGTYWYYETDLS 198


>tr|A5KDZ5|A5KDZ5_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_111215 PE=4 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  ACALVTTCIGITVSFSKPLLDGIASNMFNAIFHHFVWFYWAVTNQLS 154
           +C ++  CIG  + FSK +L  +A  M + I +  +  YW     LS
Sbjct: 152 SCTIIILCIGWNILFSKSILISMACFMLSFIINGGIGTYWYYETDLS 198