BP916295
Clone id YMU001_000086_A11
Library
Length 425
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGTTGAAGGGTTTGGATACTCACGAGGTCCGTCAGTACTTTGAAGGGAGAAGATATACTA
CAAGATTAGGGGATCATTTTGCTGCGTGTATTGAGTACGTGCTGAAGTACTCATCACTAT
TATCACCAGACCCGCTTTTTATATCACAGCAAGTGGGAGGCTGGACCATTCAAAAAGAAC
AATCTTCTAGAACATTGAAGAAATCCAAAGGCGACATCGGAAGCTTTGCCCTTGAAAAAG
GTGGGATGATGTCAGAGGTCATTGTGAGGCTCATCGAGAATGATGTACTTATTAAGCGAT
TTAGTATCTATCAAATCAACCGCAAGGGCAGAGTCAAAGAGTTATGCGAATCTGACATAG
AACGTCTTATGGATTATTTTAAGAAATCAAGTTTTGATTACCATGCATCAACAGATATTC
AGGAG
■■Homology search results ■■ -
sp_hit_id Q9KC63
Definition sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic OS=Bacillus halodurans
Align length 62
Score (bit) 32.3
E-value 0.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916295|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_A11.
(425 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic OS=Bacil... 32 0.80
sp|P40977|PLC1_SCHPO 1-phosphatidylinositol-4,5-bisphosphate pho... 31 2.3
sp|A3N0B9|RNB_ACTP2 Exoribonuclease 2 OS=Actinobacillus pleuropn... 30 3.0
sp|Q8Y7G2|SYP_LISMO Prolyl-tRNA synthetase OS=Listeria monocytog... 30 4.0
sp|Q720A3|SYP_LISMF Prolyl-tRNA synthetase OS=Listeria monocytog... 30 4.0
sp|Q82UZ8|SYP_NITEU Prolyl-tRNA synthetase OS=Nitrosomonas europ... 30 5.2
sp|A0AIC0|SYP_LISW6 Prolyl-tRNA synthetase OS=Listeria welshimer... 30 5.2
sp|Q57602|Y138_METJA Putative glutamine amidotransferase-like pr... 29 6.8
sp|A7MB73|GT253_BOVIN Glycosyltransferase 25 family member 3 OS=... 29 6.8
sp|A6NKD9|CC85C_HUMAN Coiled-coil domain-containing protein 85C ... 29 6.8
sp|Q3UKC1|TAXB1_MOUSE Tax1-binding protein 1 homolog OS=Mus musc... 29 8.8
sp|O31755|SYP_BACSU Prolyl-tRNA synthetase OS=Bacillus subtilis ... 29 8.8
sp|A7Z4S8|SYP_BACA2 Prolyl-tRNA synthetase OS=Bacillus amyloliqu... 29 8.8
sp|Q9CP74|RNB_PASMU Exoribonuclease 2 OS=Pasteurella multocida G... 29 8.8
sp|P44440|RNB_HAEIN Exoribonuclease 2 OS=Haemophilus influenzae ... 29 8.8
sp|A5UFG3|RNB_HAEIG Exoribonuclease 2 OS=Haemophilus influenzae ... 29 8.8
sp|Q4QJL5|RNB_HAEI8 Exoribonuclease 2 OS=Haemophilus influenzae ... 29 8.8
sp|Q8REC3|NPD_FUSNN NAD-dependent deacetylase OS=Fusobacterium n... 29 8.8

>sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic OS=Bacillus
halodurans GN=ilvA PE=3 SV=1
Length = 415

Score = 32.3 bits (72), Expect = 0.80
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3

Query: 234 EKGGMMSEVIVRLIENDVLIKRFSIYQINRKGR------VKELCESDIERLMDYFKKSSF 395
++ G + E I+ ++ D I RF + N K ++ C+ D RLMD K F
Sbjct: 340 QRAGALKEFILDVLGPDDDITRFEYTKKNNKSNGPVLIGIELKCDEDYHRLMDRLNKKGF 399

Query: 396 DY 401
+Y
Sbjct: 400 EY 401


>sp|P40977|PLC1_SCHPO 1-phosphatidylinositol-4,5-bisphosphate
phosphodiesterase 1 OS=Schizosaccharomyces pombe GN=plc1
PE=1 SV=1
Length = 899

Score = 30.8 bits (68), Expect = 2.3
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +3

Query: 45 GRRYTTRLGDHFAACIEYVLKYSSLLSPDPLFISQQVGGWTIQKEQSSRTLKKSKGD 215
G +T+ + F I+ + KY+ ++SP PLFIS ++ Q+ Q +K++ GD
Sbjct: 501 GHTFTSMI--KFNDVIDAIRKYAFVVSPYPLFISLEIHCCPDQQRQMVSYMKQAFGD 555


>sp|A3N0B9|RNB_ACTP2 Exoribonuclease 2 OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=rnb PE=3
SV=1
Length = 658

Score = 30.4 bits (67), Expect = 3.0
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -1

Query: 227 KASDVAFGFLQCSRRLFFL 171
KASD AFGFL+C ++ +F+
Sbjct: 27 KASDKAFGFLECDKKSYFI 45


>sp|Q8Y7G2|SYP_LISMO Prolyl-tRNA synthetase OS=Listeria
monocytogenes GN=proS PE=3 SV=1
Length = 568

Score = 30.0 bits (66), Expect = 4.0
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +3

Query: 111 SSLLSP--DPLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIEND 284
+ LL P P + Q+ G W + R ++ D FAL G EVI L+ ++
Sbjct: 67 AELLMPALQPAELWQESGRWNDYGPELMRLKDRASRD---FAL--GPTHEEVITALLRDE 121

Query: 285 VLIKR---FSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTD 416
V + ++YQI K R ++ + R ++ K ++ +HA+++
Sbjct: 122 VKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSE 168


>sp|Q720A3|SYP_LISMF Prolyl-tRNA synthetase OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=proS PE=3
SV=1
Length = 568

Score = 30.0 bits (66), Expect = 4.0
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +3

Query: 111 SSLLSP--DPLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIEND 284
+ LL P P + Q+ G W + R ++ D FAL G EVI L+ ++
Sbjct: 67 AELLMPALQPAELWQESGRWNDYGPELMRLKDRASRD---FAL--GPTHEEVITALLRDE 121

Query: 285 VLIKR---FSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTD 416
V + ++YQI K R ++ + R ++ K ++ +HA+++
Sbjct: 122 VKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSE 168


>sp|Q82UZ8|SYP_NITEU Prolyl-tRNA synthetase OS=Nitrosomonas europaea
GN=proS PE=3 SV=1
Length = 568

Score = 29.6 bits (65), Expect = 5.2
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Frame = +3

Query: 132 PLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKR---F 302
P + Q+ G W + Q + + K D G EVIV + ++ R
Sbjct: 76 PAELWQETGRWDVFGPQMLKIQDRHKHDFCF-----GPTHEEVIVDIARREIKSYRQLPI 130

Query: 303 SIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTDIQE 425
+ YQI K R + + R ++ K ++ +HA D E
Sbjct: 131 NFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVDSLE 171


>sp|A0AIC0|SYP_LISW6 Prolyl-tRNA synthetase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=proS PE=3 SV=1
Length = 568

Score = 29.6 bits (65), Expect = 5.2
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +3

Query: 111 SSLLSP--DPLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIEND 284
+ LL P P + Q+ G W + R ++ D FAL G EVI L+ ++
Sbjct: 67 AELLLPALQPAELWQESGRWNDYGPELMRLKDRASRD---FAL--GPTHEEVITALLRDE 121

Query: 285 VLIKR---FSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTD 416
V + ++YQI K R ++ + R ++ K ++ +HA+++
Sbjct: 122 VKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSE 168


>sp|Q57602|Y138_METJA Putative glutamine amidotransferase-like
protein MJ0138 OS=Methanocaldococcus jannaschii
GN=MJ0138 PE=4 SV=1
Length = 482

Score = 29.3 bits (64), Expect = 6.8
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +3

Query: 225 FALEKGGMMSEVIVRLIENDVLIKRFSIYQINRKGRVKELCESDIERLMDYFKKSSFDY 401
F + GG + +++ L + +++ +I +G V D+ + +DY KKS +DY
Sbjct: 273 FVAKIGGDVRDIVPALYLLREKMTKYNSIKIGERGWV------DVSKFLDYIKKSDYDY 325


>sp|A7MB73|GT253_BOVIN Glycosyltransferase 25 family member 3 OS=Bos
taurus GN=CERCAM PE=2 SV=1
Length = 595

Score = 29.3 bits (64), Expect = 6.8
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3

Query: 171 QKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQINRKGRVKELCE 350
Q S RTL +KG++G F L + EV+ R + V+ + ++ N KGR+++L E
Sbjct: 376 QDPYSGRTL--TKGEVGCF-LSHYSIWEEVVTRGLAQVVVFEDDVRFESNFKGRLEQLME 432


>sp|A6NKD9|CC85C_HUMAN Coiled-coil domain-containing protein 85C
OS=Homo sapiens GN=CCDC85C PE=3 SV=1
Length = 419

Score = 29.3 bits (64), Expect = 6.8
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3

Query: 174 KEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQINRK-----GRVK 338
KE+ +R L++++G+ LE GG+M +V RL ++ L++ + +N++ ++
Sbjct: 28 KEELARRLRRAEGEKVGLMLEHGGLMRDVNRRLQQH--LLEIRGLKDVNQRLQDDNQELR 85

Query: 339 ELC 347
ELC
Sbjct: 86 ELC 88


tr_hit_id A6CA61
Definition tr|A6CA61|A6CA61_9PLAN DNA-directed RNA polymerase (Fragment) OS=Planctomyces maris DSM 8797
Align length 75
Score (bit) 35.8
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916295|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_A11.
(425 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6CA61|A6CA61_9PLAN DNA-directed RNA polymerase (Fragment) OS... 36 1.1
tr|B5JQV3|B5JQV3_9BACT Type III restriction enzyme, res subunit ... 35 2.4
tr|B8F996|B8F996_9DELT Molecular chaperone GrpE (Heat shock prot... 34 4.1
tr|A0D3I1|A0D3I1_PARTE Chromosome undetermined scaffold_36, whol... 34 4.1
tr|B8LUI7|B8LUI7_9EURO Putative uncharacterized protein OS=Talar... 33 5.3
tr|A8NVN2|A8NVN2_BRUMA Serine/threonine protein kinase, putative... 33 7.0
tr|Q73LW8|Q73LW8_TREDE Chromate transport protein OS=Treponema d... 33 9.1

>tr|A6CA61|A6CA61_9PLAN DNA-directed RNA polymerase (Fragment)
OS=Planctomyces maris DSM 8797 GN=PM8797T_12156 PE=3
SV=1
Length = 935

Score = 35.8 bits (81), Expect = 1.1
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = +3

Query: 198 KKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQINRKGR---------VKELCE 350
K+ KGD G+ + GG++ + R+I ND+L ++ + Y + KGR EL
Sbjct: 554 KRIKGD-GADDFKMGGLIETTVGRVIFNDILPRKMAFYNLTMKGRDLSNVISDCYLELGR 612

Query: 351 SDIERLMDYFKKSSF 395
+ L+D K++ F
Sbjct: 613 RETINLLDKMKETGF 627


>tr|B5JQV3|B5JQV3_9BACT Type III restriction enzyme, res subunit
family OS=Verrucomicrobiae bacterium DG1235
GN=VDG1235_3518 PE=4 SV=1
Length = 953

Score = 34.7 bits (78), Expect = 2.4
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +3

Query: 102 LKYSSLLSPDPLFISQQVGGWTIQKEQSSRTLKKS--KGDIGSFALEKGGMMSEVIVRLI 275
L LSP P+ + + G + +E+ ++++ GDI F LE+ G E + +I
Sbjct: 809 LHVDRFLSPTPIRVVVDIRGNDLSEERDLAWVEENLEPGDINRF-LERPGFSREFLEAMI 867

Query: 276 --ENDVLIKRFSIYQINRKGRVKELCESDIERLMDYFK 383
++ KR + K + K++ + +IERLMD K
Sbjct: 868 GGAEEIAEKRVKRLKTAFKTKAKKVLQHEIERLMDLQK 905


>tr|B8F996|B8F996_9DELT Molecular chaperone GrpE (Heat shock
protein)-like protein OS=Desulfatibacillum alkenivorans
AK-01 GN=Dalk_1139 PE=4 SV=1
Length = 314

Score = 33.9 bits (76), Expect = 4.1
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Frame = +3

Query: 123 SPDPLFISQQVGGWTIQKEQSSRTLK-KSKGDI----------GSFALEKGGMMSEVIVR 269
S D F+S+Q+ G + Q EQ SR + K K D G K G++ + +
Sbjct: 140 SQDLGFVSEQISGLSQQMEQLSRDFESKLKYDSHKEKIIDSLHGELQEYKDGLLKKHMQS 199

Query: 270 LIENDVLIKRFSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTDIQ 422
++ D+L + +I R R KEL ESD+ +L+D + D + Q
Sbjct: 200 MVM-DILKIIDDVRKIVRYYREKELSESDLPKLLDILEDLPSDLEDAFSFQ 249


>tr|A0D3I1|A0D3I1_PARTE Chromosome undetermined scaffold_36, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00013086001 PE=4 SV=1
Length = 1351

Score = 33.9 bits (76), Expect = 4.1
Identities = 26/95 (27%), Positives = 44/95 (46%)
Frame = +3

Query: 141 ISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQIN 320
+ QQ+ TIQ Q + L++++ DI +E ++ ++L+ F++ QI
Sbjct: 950 LQQQIEELTIQLNQQTTALQQAQNDIDQMKIENTSLVKSHEMQLLREG----EFTL-QIE 1004

Query: 321 RKGRVKELCESDIERLMDYFKKSSFDYHASTDIQE 425
+ + E S IE L K+S Y DIQE
Sbjct: 1005 QLIEINEQKSSKIEELETQIKESQLQY--QNDIQE 1037


>tr|B8LUI7|B8LUI7_9EURO Putative uncharacterized protein
OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_071570 PE=4
SV=1
Length = 261

Score = 33.5 bits (75), Expect = 5.3
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3

Query: 138 FISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKR-FSIYQ 314
F +Q V G ++RTL K + L GG SE++ RL NDVL R F+I +
Sbjct: 37 FSAQPVEGTDKAAAYAARTLADLKNECHRRGLRTGGSKSELVDRLSNNDVLYTRAFNIAK 96

Query: 315 INRKGRV 335
G V
Sbjct: 97 TRINGSV 103


>tr|A8NVN2|A8NVN2_BRUMA Serine/threonine protein kinase, putative
OS=Brugia malayi GN=Bm1_10815 PE=4 SV=1
Length = 201

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3

Query: 267 RLIENDVLIK--RFSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTDIQE 425
R+ N ++++ R Y ++K ++ ++C+S I+ +M +FDYH DIQ+
Sbjct: 151 RVASNTIIVEAQRNRTYHYSKKLQLSQMCQSTIDTMM------TFDYHTRPDIQQ 199


>tr|Q73LW8|Q73LW8_TREDE Chromate transport protein OS=Treponema
denticola GN=TDE_1744 PE=4 SV=1
Length = 195

Score = 32.7 bits (73), Expect = 9.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3

Query: 45 GRRYTTRLGDHFAACIEYVLKYSSLLSPDPLFISQQVGGWTIQKEQSSRTLKKSKGD 215
G++ L A + +VL ++ + + I + GW Q +SSR LKK+KG+
Sbjct: 137 GKKTVFDLCTFLIAALSFVLMFAFKVQGVWIVIGSALSGWLFQTIKSSRLLKKNKGE 193