BP916295 |
Clone id |
YMU001_000086_A11 |
Library |
YMU01 |
Length |
425 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000086_A11. |
Accession |
BP916295 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GGTTGAAGGGTTTGGATACTCACGAGGTCCGTCAGTACTTTGAAGGGAGAAGATATACTA CAAGATTAGGGGATCATTTTGCTGCGTGTATTGAGTACGTGCTGAAGTACTCATCACTAT TATCACCAGACCCGCTTTTTATATCACAGCAAGTGGGAGGCTGGACCATTCAAAAAGAAC AATCTTCTAGAACATTGAAGAAATCCAAAGGCGACATCGGAAGCTTTGCCCTTGAAAAAG GTGGGATGATGTCAGAGGTCATTGTGAGGCTCATCGAGAATGATGTACTTATTAAGCGAT TTAGTATCTATCAAATCAACCGCAAGGGCAGAGTCAAAGAGTTATGCGAATCTGACATAG AACGTCTTATGGATTATTTTAAGAAATCAAGTTTTGATTACCATGCATCAACAGATATTC AGGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9KC63 |
Definition |
sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic OS=Bacillus halodurans |
Align length |
62 |
Score (bit) |
32.3 |
E-value |
0.8 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916295|Adiantum capillus-veneris mRNA, clone: YMU001_000086_A11. (425 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic OS=Bacil... 32 0.80 sp|P40977|PLC1_SCHPO 1-phosphatidylinositol-4,5-bisphosphate pho... 31 2.3 sp|A3N0B9|RNB_ACTP2 Exoribonuclease 2 OS=Actinobacillus pleuropn... 30 3.0 sp|Q8Y7G2|SYP_LISMO Prolyl-tRNA synthetase OS=Listeria monocytog... 30 4.0 sp|Q720A3|SYP_LISMF Prolyl-tRNA synthetase OS=Listeria monocytog... 30 4.0 sp|Q82UZ8|SYP_NITEU Prolyl-tRNA synthetase OS=Nitrosomonas europ... 30 5.2 sp|A0AIC0|SYP_LISW6 Prolyl-tRNA synthetase OS=Listeria welshimer... 30 5.2 sp|Q57602|Y138_METJA Putative glutamine amidotransferase-like pr... 29 6.8 sp|A7MB73|GT253_BOVIN Glycosyltransferase 25 family member 3 OS=... 29 6.8 sp|A6NKD9|CC85C_HUMAN Coiled-coil domain-containing protein 85C ... 29 6.8 sp|Q3UKC1|TAXB1_MOUSE Tax1-binding protein 1 homolog OS=Mus musc... 29 8.8 sp|O31755|SYP_BACSU Prolyl-tRNA synthetase OS=Bacillus subtilis ... 29 8.8 sp|A7Z4S8|SYP_BACA2 Prolyl-tRNA synthetase OS=Bacillus amyloliqu... 29 8.8 sp|Q9CP74|RNB_PASMU Exoribonuclease 2 OS=Pasteurella multocida G... 29 8.8 sp|P44440|RNB_HAEIN Exoribonuclease 2 OS=Haemophilus influenzae ... 29 8.8 sp|A5UFG3|RNB_HAEIG Exoribonuclease 2 OS=Haemophilus influenzae ... 29 8.8 sp|Q4QJL5|RNB_HAEI8 Exoribonuclease 2 OS=Haemophilus influenzae ... 29 8.8 sp|Q8REC3|NPD_FUSNN NAD-dependent deacetylase OS=Fusobacterium n... 29 8.8
>sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic OS=Bacillus halodurans GN=ilvA PE=3 SV=1 Length = 415
Score = 32.3 bits (72), Expect = 0.80 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%) Frame = +3
Query: 234 EKGGMMSEVIVRLIENDVLIKRFSIYQINRKGR------VKELCESDIERLMDYFKKSSF 395 ++ G + E I+ ++ D I RF + N K ++ C+ D RLMD K F Sbjct: 340 QRAGALKEFILDVLGPDDDITRFEYTKKNNKSNGPVLIGIELKCDEDYHRLMDRLNKKGF 399
Query: 396 DY 401 +Y Sbjct: 400 EY 401
>sp|P40977|PLC1_SCHPO 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase 1 OS=Schizosaccharomyces pombe GN=plc1 PE=1 SV=1 Length = 899
Score = 30.8 bits (68), Expect = 2.3 Identities = 18/57 (31%), Positives = 32/57 (56%) Frame = +3
Query: 45 GRRYTTRLGDHFAACIEYVLKYSSLLSPDPLFISQQVGGWTIQKEQSSRTLKKSKGD 215 G +T+ + F I+ + KY+ ++SP PLFIS ++ Q+ Q +K++ GD Sbjct: 501 GHTFTSMI--KFNDVIDAIRKYAFVVSPYPLFISLEIHCCPDQQRQMVSYMKQAFGD 555
>sp|A3N0B9|RNB_ACTP2 Exoribonuclease 2 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rnb PE=3 SV=1 Length = 658
Score = 30.4 bits (67), Expect = 3.0 Identities = 11/19 (57%), Positives = 16/19 (84%) Frame = -1
Query: 227 KASDVAFGFLQCSRRLFFL 171 KASD AFGFL+C ++ +F+ Sbjct: 27 KASDKAFGFLECDKKSYFI 45
>sp|Q8Y7G2|SYP_LISMO Prolyl-tRNA synthetase OS=Listeria monocytogenes GN=proS PE=3 SV=1 Length = 568
Score = 30.0 bits (66), Expect = 4.0 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Frame = +3
Query: 111 SSLLSP--DPLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIEND 284 + LL P P + Q+ G W + R ++ D FAL G EVI L+ ++ Sbjct: 67 AELLMPALQPAELWQESGRWNDYGPELMRLKDRASRD---FAL--GPTHEEVITALLRDE 121
Query: 285 VLIKR---FSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTD 416 V + ++YQI K R ++ + R ++ K ++ +HA+++ Sbjct: 122 VKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSE 168
>sp|Q720A3|SYP_LISMF Prolyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=proS PE=3 SV=1 Length = 568
Score = 30.0 bits (66), Expect = 4.0 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Frame = +3
Query: 111 SSLLSP--DPLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIEND 284 + LL P P + Q+ G W + R ++ D FAL G EVI L+ ++ Sbjct: 67 AELLMPALQPAELWQESGRWNDYGPELMRLKDRASRD---FAL--GPTHEEVITALLRDE 121
Query: 285 VLIKR---FSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTD 416 V + ++YQI K R ++ + R ++ K ++ +HA+++ Sbjct: 122 VKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSE 168
>sp|Q82UZ8|SYP_NITEU Prolyl-tRNA synthetase OS=Nitrosomonas europaea GN=proS PE=3 SV=1 Length = 568
Score = 29.6 bits (65), Expect = 5.2 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 3/101 (2%) Frame = +3
Query: 132 PLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKR---F 302 P + Q+ G W + Q + + K D G EVIV + ++ R Sbjct: 76 PAELWQETGRWDVFGPQMLKIQDRHKHDFCF-----GPTHEEVIVDIARREIKSYRQLPI 130
Query: 303 SIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTDIQE 425 + YQI K R + + R ++ K ++ +HA D E Sbjct: 131 NFYQIQTKFRDEIRPRFGVMRAREFIMKDAYSFHADVDSLE 171
>sp|A0AIC0|SYP_LISW6 Prolyl-tRNA synthetase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=proS PE=3 SV=1 Length = 568
Score = 29.6 bits (65), Expect = 5.2 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%) Frame = +3
Query: 111 SSLLSP--DPLFISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIEND 284 + LL P P + Q+ G W + R ++ D FAL G EVI L+ ++ Sbjct: 67 AELLLPALQPAELWQESGRWNDYGPELMRLKDRASRD---FAL--GPTHEEVITALLRDE 121
Query: 285 VLIKR---FSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTD 416 V + ++YQI K R ++ + R ++ K ++ +HA+++ Sbjct: 122 VKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDAYSFHATSE 168
>sp|Q57602|Y138_METJA Putative glutamine amidotransferase-like protein MJ0138 OS=Methanocaldococcus jannaschii GN=MJ0138 PE=4 SV=1 Length = 482
Score = 29.3 bits (64), Expect = 6.8 Identities = 15/59 (25%), Positives = 30/59 (50%) Frame = +3
Query: 225 FALEKGGMMSEVIVRLIENDVLIKRFSIYQINRKGRVKELCESDIERLMDYFKKSSFDY 401 F + GG + +++ L + +++ +I +G V D+ + +DY KKS +DY Sbjct: 273 FVAKIGGDVRDIVPALYLLREKMTKYNSIKIGERGWV------DVSKFLDYIKKSDYDY 325
>sp|A7MB73|GT253_BOVIN Glycosyltransferase 25 family member 3 OS=Bos taurus GN=CERCAM PE=2 SV=1 Length = 595
Score = 29.3 bits (64), Expect = 6.8 Identities = 20/60 (33%), Positives = 33/60 (55%) Frame = +3
Query: 171 QKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQINRKGRVKELCE 350 Q S RTL +KG++G F L + EV+ R + V+ + ++ N KGR+++L E Sbjct: 376 QDPYSGRTL--TKGEVGCF-LSHYSIWEEVVTRGLAQVVVFEDDVRFESNFKGRLEQLME 432
>sp|A6NKD9|CC85C_HUMAN Coiled-coil domain-containing protein 85C OS=Homo sapiens GN=CCDC85C PE=3 SV=1 Length = 419
Score = 29.3 bits (64), Expect = 6.8 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Frame = +3
Query: 174 KEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQINRK-----GRVK 338 KE+ +R L++++G+ LE GG+M +V RL ++ L++ + +N++ ++ Sbjct: 28 KEELARRLRRAEGEKVGLMLEHGGLMRDVNRRLQQH--LLEIRGLKDVNQRLQDDNQELR 85
Query: 339 ELC 347 ELC Sbjct: 86 ELC 88
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6CA61 |
Definition |
tr|A6CA61|A6CA61_9PLAN DNA-directed RNA polymerase (Fragment) OS=Planctomyces maris DSM 8797 |
Align length |
75 |
Score (bit) |
35.8 |
E-value |
1.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916295|Adiantum capillus-veneris mRNA, clone: YMU001_000086_A11. (425 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6CA61|A6CA61_9PLAN DNA-directed RNA polymerase (Fragment) OS... 36 1.1 tr|B5JQV3|B5JQV3_9BACT Type III restriction enzyme, res subunit ... 35 2.4 tr|B8F996|B8F996_9DELT Molecular chaperone GrpE (Heat shock prot... 34 4.1 tr|A0D3I1|A0D3I1_PARTE Chromosome undetermined scaffold_36, whol... 34 4.1 tr|B8LUI7|B8LUI7_9EURO Putative uncharacterized protein OS=Talar... 33 5.3 tr|A8NVN2|A8NVN2_BRUMA Serine/threonine protein kinase, putative... 33 7.0 tr|Q73LW8|Q73LW8_TREDE Chromate transport protein OS=Treponema d... 33 9.1
>tr|A6CA61|A6CA61_9PLAN DNA-directed RNA polymerase (Fragment) OS=Planctomyces maris DSM 8797 GN=PM8797T_12156 PE=3 SV=1 Length = 935
Score = 35.8 bits (81), Expect = 1.1 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%) Frame = +3
Query: 198 KKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQINRKGR---------VKELCE 350 K+ KGD G+ + GG++ + R+I ND+L ++ + Y + KGR EL Sbjct: 554 KRIKGD-GADDFKMGGLIETTVGRVIFNDILPRKMAFYNLTMKGRDLSNVISDCYLELGR 612
Query: 351 SDIERLMDYFKKSSF 395 + L+D K++ F Sbjct: 613 RETINLLDKMKETGF 627
>tr|B5JQV3|B5JQV3_9BACT Type III restriction enzyme, res subunit family OS=Verrucomicrobiae bacterium DG1235 GN=VDG1235_3518 PE=4 SV=1 Length = 953
Score = 34.7 bits (78), Expect = 2.4 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Frame = +3
Query: 102 LKYSSLLSPDPLFISQQVGGWTIQKEQSSRTLKKS--KGDIGSFALEKGGMMSEVIVRLI 275 L LSP P+ + + G + +E+ ++++ GDI F LE+ G E + +I Sbjct: 809 LHVDRFLSPTPIRVVVDIRGNDLSEERDLAWVEENLEPGDINRF-LERPGFSREFLEAMI 867
Query: 276 --ENDVLIKRFSIYQINRKGRVKELCESDIERLMDYFK 383 ++ KR + K + K++ + +IERLMD K Sbjct: 868 GGAEEIAEKRVKRLKTAFKTKAKKVLQHEIERLMDLQK 905
>tr|B8F996|B8F996_9DELT Molecular chaperone GrpE (Heat shock protein)-like protein OS=Desulfatibacillum alkenivorans AK-01 GN=Dalk_1139 PE=4 SV=1 Length = 314
Score = 33.9 bits (76), Expect = 4.1 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%) Frame = +3
Query: 123 SPDPLFISQQVGGWTIQKEQSSRTLK-KSKGDI----------GSFALEKGGMMSEVIVR 269 S D F+S+Q+ G + Q EQ SR + K K D G K G++ + + Sbjct: 140 SQDLGFVSEQISGLSQQMEQLSRDFESKLKYDSHKEKIIDSLHGELQEYKDGLLKKHMQS 199
Query: 270 LIENDVLIKRFSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTDIQ 422 ++ D+L + +I R R KEL ESD+ +L+D + D + Q Sbjct: 200 MVM-DILKIIDDVRKIVRYYREKELSESDLPKLLDILEDLPSDLEDAFSFQ 249
>tr|A0D3I1|A0D3I1_PARTE Chromosome undetermined scaffold_36, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00013086001 PE=4 SV=1 Length = 1351
Score = 33.9 bits (76), Expect = 4.1 Identities = 26/95 (27%), Positives = 44/95 (46%) Frame = +3
Query: 141 ISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKRFSIYQIN 320 + QQ+ TIQ Q + L++++ DI +E ++ ++L+ F++ QI Sbjct: 950 LQQQIEELTIQLNQQTTALQQAQNDIDQMKIENTSLVKSHEMQLLREG----EFTL-QIE 1004
Query: 321 RKGRVKELCESDIERLMDYFKKSSFDYHASTDIQE 425 + + E S IE L K+S Y DIQE Sbjct: 1005 QLIEINEQKSSKIEELETQIKESQLQY--QNDIQE 1037
>tr|B8LUI7|B8LUI7_9EURO Putative uncharacterized protein OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_071570 PE=4 SV=1 Length = 261
Score = 33.5 bits (75), Expect = 5.3 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3
Query: 138 FISQQVGGWTIQKEQSSRTLKKSKGDIGSFALEKGGMMSEVIVRLIENDVLIKR-FSIYQ 314 F +Q V G ++RTL K + L GG SE++ RL NDVL R F+I + Sbjct: 37 FSAQPVEGTDKAAAYAARTLADLKNECHRRGLRTGGSKSELVDRLSNNDVLYTRAFNIAK 96
Query: 315 INRKGRV 335 G V Sbjct: 97 TRINGSV 103
>tr|A8NVN2|A8NVN2_BRUMA Serine/threonine protein kinase, putative OS=Brugia malayi GN=Bm1_10815 PE=4 SV=1 Length = 201
Score = 33.1 bits (74), Expect = 7.0 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = +3
Query: 267 RLIENDVLIK--RFSIYQINRKGRVKELCESDIERLMDYFKKSSFDYHASTDIQE 425 R+ N ++++ R Y ++K ++ ++C+S I+ +M +FDYH DIQ+ Sbjct: 151 RVASNTIIVEAQRNRTYHYSKKLQLSQMCQSTIDTMM------TFDYHTRPDIQQ 199
>tr|Q73LW8|Q73LW8_TREDE Chromate transport protein OS=Treponema denticola GN=TDE_1744 PE=4 SV=1 Length = 195
Score = 32.7 bits (73), Expect = 9.1 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3
Query: 45 GRRYTTRLGDHFAACIEYVLKYSSLLSPDPLFISQQVGGWTIQKEQSSRTLKKSKGD 215 G++ L A + +VL ++ + + I + GW Q +SSR LKK+KG+ Sbjct: 137 GKKTVFDLCTFLIAALSFVLMFAFKVQGVWIVIGSALSGWLFQTIKSSRLLKKNKGE 193
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