NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916306
Clone id YMU001_000086_B11
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAACACCAACAGGAGGTGAGAGTGGGATCGACTACACTCGACAACAGCATGTGTGGGTTT
GAGGCAGCAGCTAAGGGCGTTGAGAGATCAGGGTCCGCGACAATACTGCAGAGGCCAGAG
TGCATGGCGACTGACTATGCAGCAAGTACAAATACAGCGCATGGTGCCACCAGTGCAGCT
CCTAGGATTCGCTTCTCCTCACACCACATAGGGTCGTGTTGCAGGCAAGGTTATAAATTT
TAGAATCGTGGGTCGGAAATTTCAGAAAGTGCAGAGATTGTGGATAGATGCGGATGCACA
TATATGAATGATGTGGAGAGTGTAACCAAATGCCATGTATGCATAATGTGGAAACACATA
TTTACGTAGTGTGTATTTCCCTCTCACGAACTTTCTCCCTCTCCCTCTCAAACATGAAGA
AGCAAAATGGCAAAGACGACTCTCTGAAGGATGCCATTCAAAAATGCAAAGAAGAAATGG
GCGAGACCATTAACAAAATTAATCGCAACCTCCTAGACACAATAAAGATACTCGAAGAAC
GCGTGTCG
■■Homology search results ■■ -
sp_hit_id Q6RY98
Definition sp|Q6RY98|SRTDL_ATRMM Long-sarafotoxins (Fragment) OS=Atractaspis microlepidota microlepidota
Align length 47
Score (bit) 33.9
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916306|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_B11.
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6RY98|SRTDL_ATRMM Long-sarafotoxins (Fragment) OS=Atractaspi...    34   0.50 
sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1        32   1.9  
sp|O66834|RECN_AQUAE DNA repair protein recN OS=Aquifex aeolicus...    32   2.5  
sp|Q9VZZ4|PXDN_DROME Peroxidasin OS=Drosophila melanogaster GN=P...    31   3.3  
sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1        31   4.3  
sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia G...    31   4.3  
sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana GN=...    30   5.7  
sp|P85120|DAPLE_XENLA Daple-like protein OS=Xenopus laevis GN=cc...    30   7.4  
sp|Q9YML3|BROJ_NPVLD Uncharacterized Bro-N domain-containing pro...    30   7.4  
sp|P44133|Y1241_HAEIN Uncharacterized protein HI1241 OS=Haemophi...    30   9.7  
sp|Q38858|CALR2_ARATH Calreticulin-2 OS=Arabidopsis thaliana GN=...    30   9.7  

>sp|Q6RY98|SRTDL_ATRMM Long-sarafotoxins (Fragment) OS=Atractaspis
           microlepidota microlepidota PE=1 SV=1
          Length = 351

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 273 RCGCTYMNDVESVTKCHVCIMWKHIFT*CVFPSHELSPSPSQT*RSK 413
           RC C  MND E V  CH+ I+W       V  + E +  PS   RS+
Sbjct: 125 RCSCNDMNDKECVYFCHLDIIWDEPVVVSVRDTEEATRVPSPQKRSQ 171



 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 273 RCGCTYMNDVESVTKCHVCIMWKHIFT*CVFPSHELSPSPSQT*RSK 413
           RC C  MND E +  CH  ++W       V  + E +  PS   RS+
Sbjct: 77  RCSCNDMNDKECMYFCHQDVIWDEPVVVSVRDTEEAARVPSPQKRSQ 123


>sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1
          Length = 415

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 314 QMPCMHNVETHIYVVCISLSRTFSLSLSNMKKQNG 418
           ++PC  +  TH+Y + I    T+S+ + N++KQ G
Sbjct: 161 EVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTG 195


>sp|O66834|RECN_AQUAE DNA repair protein recN OS=Aquifex aeolicus
           GN=recN PE=3 SV=1
          Length = 520

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 392 LSNMKKQNGKDDSLKDAIQKCKEEMGETINKINRNLLDTIKILEERV 532
           LSN+   + K++ L++ ++K +EE  +   +++R+     + LEER+
Sbjct: 306 LSNLNSVDFKEEELREEVEKLREEYDKLAEEVSRDRRKKAEDLEERI 352


>sp|Q9VZZ4|PXDN_DROME Peroxidasin OS=Drosophila melanogaster GN=Pxn
            PE=1 SV=1
          Length = 1527

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = +2

Query: 224  ILESWVGNFRKCRDCG*MRMHIYE*CGECNQMPCMHNVETHIYVVCISLSRTFSLSLSNM 403
            IL    G ++KC D   + +++++ CG CN  P + +           + +T++   +  
Sbjct: 1325 ILAKHQGGYKKCEDIIGINLYLWQECGRCNSPPAIFD---------SYIPQTYTKRSNRQ 1375

Query: 404  KKQNGKDD 427
            K+  GK++
Sbjct: 1376 KRDLGKEN 1383


>sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1
          Length = 421

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 317 MPCMHNVETHIYVVCISLSRTFSLSLSNMKKQNG 418
           +PC  +  TH+Y   I    T+S+ + N++KQ G
Sbjct: 166 VPCETDQLTHVYTFIIRPDATYSILIDNLEKQTG 199


>sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia
           GN=CAL1 PE=2 SV=1
          Length = 416

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 314 QMPCMHNVETHIYVVCISLSRTFSLSLSNMKKQNG 418
           ++PC  +  TH+Y   +    T+S+ + N++KQ+G
Sbjct: 168 EVPCETDQLTHVYTFILRPDATYSILIDNVEKQSG 202


>sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana
           GN=CRT1 PE=1 SV=1
          Length = 425

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 314 QMPCMHNVETHIYVVCISLSRTFSLSLSNMKKQNG 418
           ++PC  +  TH+Y   +    T+S+ + N++KQ G
Sbjct: 163 EVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTG 197


>sp|P85120|DAPLE_XENLA Daple-like protein OS=Xenopus laevis
           GN=ccdc88c PE=1 SV=1
          Length = 2058

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
 Frame = +2

Query: 371 SRTFSLSLSNMKKQNGKDDSLKDAIQKCKEEMGET---------INKINRNLLDTIKILE 523
           +RT+   + ++K++  K D L++ + +CKE++ +          + + N  L++T  +LE
Sbjct: 308 ARTYRDEIDSLKERASKVDRLENELARCKEKLHDVDFYKARMDELREDNMILIETKSMLE 367

Query: 524 ERVS 535
           E+++
Sbjct: 368 EQLA 371


>sp|Q9YML3|BROJ_NPVLD Uncharacterized Bro-N domain-containing
           protein J OS=Lymantria dispar multicapsid nuclear
           polyhedrosis virus PE=4 SV=1
          Length = 403

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 419 KDDSLKDAIQKCKEEMGETINKINRNLLDTIKILEERVS 535
           KD+  K+ IQK  E+  E I K +  L +TI+  +E+++
Sbjct: 250 KDEQFKETIQKKDEQFQEIIQKKDAQLQETIQRKDEQIA 288


>sp|P44133|Y1241_HAEIN Uncharacterized protein HI1241 OS=Haemophilus
           influenzae GN=HI1241 PE=4 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -1

Query: 481 VNGLAHFFFAFLNGILQRV----VFAILLLHVXXXXXXXXXXGNTHYVNMCFHIMHTWHL 314
           +N LA F F  LNG+   V    VFA ++  V             H+V     I+H++  
Sbjct: 194 LNALAMFLFLLLNGMESAVNSESVFAYIIYFVC------------HFVIAAILILHSFQK 241

Query: 313 VTLSTSFIYV 284
            TLST+ +++
Sbjct: 242 WTLSTNSLFI 251
tr_hit_id Q1J112
Definition tr|Q1J112|Q1J112_DEIGD Putative uncharacterized protein OS=Deinococcus geothermalis (strain DSM 11300)
Align length 51
Score (bit) 35.8
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916306|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_B11.
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1J112|Q1J112_DEIGD Putative uncharacterized protein OS=Deino...    36   1.4  
tr|B6SWW3|B6SWW3_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.2  
tr|B4S3X2|B4S3X2_PROA2 Homoserine kinase OS=Prosthecochloris aes...    34   5.4  
tr|Q8F7M6|Q8F7M6_LEPIN Enoyl-CoA hydratase OS=Leptospira interro...    34   5.5  
tr|Q72NV4|Q72NV4_LEPIC 3-hydroxybutyryl-CoA dehydratase OS=Lepto...    34   5.5  
tr|Q29FB4|Q29FB4_DROPS GA11325 OS=Drosophila pseudoobscura pseud...    34   5.5  
tr|B4H1J9|B4H1J9_DROPE GL22623 OS=Drosophila persimilis GN=GL226...    34   5.5  
tr|A7SAM9|A7SAM9_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   7.0  
tr|B6NW14|B6NW14_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|B4N392|B4N392_DROWI GK12503 OS=Drosophila willistoni GN=GK125...    33   7.2  
tr|B3NBK0|B3NBK0_DROER GG14508 OS=Drosophila erecta GN=GG14508 P...    33   7.2  
tr|Q2HAZ1|Q2HAZ1_CHAGB Putative uncharacterized protein OS=Chaet...    33   7.2  
tr|Q03GT5|Q03GT5_PEDPA Uncharacterized integral membrane protein...    33   9.3  
tr|A7AWG6|A7AWG6_BABBO Putative uncharacterized protein OS=Babes...    33   9.3  

>tr|Q1J112|Q1J112_DEIGD Putative uncharacterized protein
           OS=Deinococcus geothermalis (strain DSM 11300)
           GN=Dgeo_0520 PE=4 SV=1
          Length = 285

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 19/51 (37%), Positives = 34/51 (66%)
 Frame = +1

Query: 133 VQIQRMVPPVQLLGFASPHTT*GRVAGKVINFRIVGRKFQKVQRLWIDADA 285
           +Q+Q    P+++LG AS     G  AG ++   IVGR+FQ+ +++++DAD+
Sbjct: 75  LQVQLQKEPLRMLGGASAV---GAAAGTLLGV-IVGRQFQRTKKIYVDADS 121


>tr|B6SWW3|B6SWW3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 226 NL*PCLQH--DPM-WCEEKRILGAALVAPCAVFVLAA*SVAMHSGLCSIVADPDLSTPLA 56
           +L P L+H  +P  WC    ++G       A    +A +V  H G  S+ ADP L+TP A
Sbjct: 21  SLQPFLEHWREPFTWCGAGIVVGDLCAVGSAKVAASAPTVRQH-GAASLFADPQLATPPA 79

Query: 55  AAS 47
           AAS
Sbjct: 80  AAS 82


>tr|B4S3X2|B4S3X2_PROA2 Homoserine kinase OS=Prosthecochloris
           aestuarii (strain DSM 271 / SK 413) GN=Paes_0261 PE=4
           SV=1
          Length = 320

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 15  STTLDNSMCGFEAAAKGVERSGSATILQRPECMATDYAASTNTAHGATSAAPR 173
           S T+ N  CGF+     ++  G   IL   E  +++   S  T HG   A PR
Sbjct: 9   SATIGNVACGFDVLGFAIKEPGDEVILTLHEESSSESPVSIKTIHGDGGALPR 61


>tr|Q8F7M6|Q8F7M6_LEPIN Enoyl-CoA hydratase OS=Leptospira
           interrogans GN=ech2 PE=4 SV=1
          Length = 266

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = +2

Query: 302 GECNQMPCMHNVETHIYVVCISLSRTFSLSLSNMKKQNGKDDSLKDAIQKCKEEMGETIN 481
           G CN       V      + I+LS +  L+LS +KK     + L+ A++  KE   +  N
Sbjct: 185 GLCNDSVPQKEVLGRATEIAIALSESAPLALSELKKNTYDKEKLEAALR--KEAESQARN 242

Query: 482 KINRNLLDTIKILEER 529
            I+ +  +TIK +E++
Sbjct: 243 FISSDFKETIKAIEQK 258


>tr|Q72NV4|Q72NV4_LEPIC 3-hydroxybutyryl-CoA dehydratase
           OS=Leptospira interrogans serogroup Icterohaemorrhagiae
           serovar copenhageni GN=LIC_12725 PE=4 SV=1
          Length = 266

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = +2

Query: 302 GECNQMPCMHNVETHIYVVCISLSRTFSLSLSNMKKQNGKDDSLKDAIQKCKEEMGETIN 481
           G CN       V      + I+LS +  L+LS +KK     + L+ A++  KE   +  N
Sbjct: 185 GLCNDSVPQKEVLGRATEIAIALSESAPLALSELKKNTYDKEKLEAALR--KEAESQARN 242

Query: 482 KINRNLLDTIKILEER 529
            I+ +  +TIK +E++
Sbjct: 243 FISSDFKETIKAIEQK 258


>tr|Q29FB4|Q29FB4_DROPS GA11325 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA11325 PE=4 SV=2
          Length = 1529

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 224  ILESWVGNFRKCRDCG*MRMHIYE*CGECNQMP 322
            IL    G ++KC D   + +++++ CG CN MP
Sbjct: 1319 ILAKHQGGYKKCEDIPGINLYLWQDCGNCNSMP 1351


>tr|B4H1J9|B4H1J9_DROPE GL22623 OS=Drosophila persimilis GN=GL22623
            PE=4 SV=1
          Length = 1534

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 224  ILESWVGNFRKCRDCG*MRMHIYE*CGECNQMP 322
            IL    G ++KC D   + +++++ CG CN MP
Sbjct: 1324 ILAKHQGGYKKCEDIPGINLYLWQDCGNCNSMP 1356


>tr|A7SAM9|A7SAM9_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g111222 PE=4 SV=1
          Length = 256

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 173 PRSCTGGTMRCICTCCIVSRHALWPLQYCRGP*SLNALSCCLKPTHAVV-ECSRSHSH 3
           P  C  G+   + TCCI   H L P     G   L   SCC+  +H ++  C  S SH
Sbjct: 21  PTCCISGSHGLLPTCCISGSHGLLPTCCISGSHGL-LPSCCISGSHGLLPTCCISGSH 77


>tr|B6NW14|B6NW14_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_129123 PE=4 SV=1
          Length = 309

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +2

Query: 329 HNVETHIYVVCISLSRTFSLSLS----NMKKQNGKDDSLKDAIQKCKEEMGETINKINRN 496
           HNV   +   C S  R    S      N K++ GK  + KD+++KC++E   T  + N N
Sbjct: 28  HNVNCIVRFSCESAKRNEKESTESEKRNEKERKGKKRNEKDSLRKCEKERKGTKYEANSN 87

Query: 497 LLDTI 511
            +D I
Sbjct: 88  KIDGI 92


>tr|B4N392|B4N392_DROWI GK12503 OS=Drosophila willistoni GN=GK12503
            PE=4 SV=1
          Length = 1540

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 224  ILESWVGNFRKCRDCG*MRMHIYE*CGECNQMP 322
            IL    G ++KC D   + +++++ CG CN +P
Sbjct: 1325 ILAKHQGGYKKCEDVAGVNLYLWQDCGNCNSLP 1357