BP916308 [AcEST]

BP916308
Clone id	YMU001_000086_C01
Library	YMU01
Length	543
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000086_C01.
Accession	BP916308
Tissue type	prothallium
Developmental stage	-
Contig ID	-
Sequence	CTTGTTCGTCATCCGCAGATGGGTCCACAATGTGACGCCATCCTGTTCGTACTCCTCGGT CAACCATGCCGAAGTGAACAGTTTCTTGAACTTTATCCACGTCTTCGGTGCTTTTCTTGT TCAGGAGTTGAGTCCGCCACCGTGTCTAAGCATTAACCCTTCACAAAAGATACCACCTTT CGTACGTTGGAGGCTCTAGAGTAAGCGGTGTCAAACTGTTGTGTAAAAGCAGGAGCTCAA TGGGAATCCTTGAAACCCGTAAAAGTGTCCAACTTTACAGCTTGACCCCATTCTTGAACT CTTTAGTCTTCTTTTTCTTCTTCACAAAGTTGTCGTATTGAGTAGGTCTCGATAGGTGAT TCTACTTCTTACCATAAATGGTACCAAACGGGCGGGTGTCATTGTCTGAACCATTGGACG AGGGCGAGGTCTCCTCCTCTGACCTGCTAGATTGCTTTCTCTACTTTCTAGACTTTTTCT TGGATCTACTTTTCTTGGTCATTCTCTGCTTCTTCCACCTTTTCTCGTGCTCACTGGAAC TTG
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q089C0
Definition	sp\|Q089C0\|MEND_SHEFN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase OS=Shewanella frigidimarina (strain NCIMB 400)
Align length	55
Score (bit)	29.6
E-value	9.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP916308\|Adiantum capillus-veneris mRNA, clone: YMU001_000086_C01. (543 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q089C0\|MEND_SHEFN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh... 30 9.9 >sp\|Q089C0\|MEND_SHEFN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase OS=Shewanella frigidimarina (strain NCIMB 400) GN=menD PE=3 SV=1 Length = 579 Score = 29.6 bits (65), Expect = 9.9 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +2 Query: 11 IRRWVHNVTPSCSYSSVNHAEV---NSFLNFIHVFGAFLVQELSPPPCLSINPSQ 166 + +W N P Y+S+ AE+ ++ + F+H G +V L+P NP Q Sbjct: 201 LNQWFENTKPLTRYASLTSAELPTTDTLMRFVHGKGVIVVGTLAPED----NPQQ 251
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP916308\|Adiantum capillus-veneris mRNA, clone: YMU001_000086_C01. (543 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****