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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916313
Clone id YMU001_000086_C06
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAAAAAATAGAACATTTTAGCATCACGTGTAGTGCCTTGCCACCTTCTTACTGTAAGG
GGAGACCACTTAAGGTGGCTTATGGGGCTGGCAACATACTATCCATACAAAAATCCTACC
TCCTGACGGTAAGACGAAAAGGGCACCTCGTCTTTGTAGTATGTCGCATATATCATGGCT
AGAAAGTCCAGGCATATGCAGTGAGTGCTTAGTCATCCGATAACCACTACATGCCTGATG
GTAGTATTCTGTCATTCCACCTCTAATCAATAGACCAACTAGTGCTGACACCTTTGTCAT
TTCCACTCATCTGGAGGCAGCACAGGCAAAGGCTCCGGAAGCAAAGTGTTCACTCTATCA
TGGGATTTGCATGACTTGTATCGATTGTAGCATATCTGATACAGCGATTACCAAA
■■Homology search results ■■ -
sp_hit_id Q43117
Definition sp|Q43117|KPYA_RICCO Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis
Align length 18
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916313|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_C06.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q43117|KPYA_RICCO Pyruvate kinase isozyme A, chloroplastic OS...    34   0.26 
sp|Q40545|KPYA_TOBAC Pyruvate kinase isozyme A, chloroplastic OS...    33   0.34 
sp|Q8FNU0|MURG_COREF UDP-N-acetylglucosamine--N-acetylmuramyl-(p...    31   2.2  
sp|Q2GIN1|SYY_ANAPZ Tyrosyl-tRNA synthetase OS=Anaplasma phagocy...    30   2.9  
sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3 OS=Cae...    29   6.5  
sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3 OS=Cae...    29   6.5  
sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HK...    29   8.4  
sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo...    29   8.4  

>sp|Q43117|KPYA_RICCO Pyruvate kinase isozyme A, chloroplastic
           OS=Ricinus communis PE=1 SV=1
          Length = 583

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIAVSDMLQSIQVM +P
Sbjct: 566 LVIAVSDMLQSIQVMNVP 583


>sp|Q40545|KPYA_TOBAC Pyruvate kinase isozyme A, chloroplastic
           OS=Nicotiana tabacum PE=2 SV=1
          Length = 593

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           L+IAVSDMLQSIQVM +P
Sbjct: 576 LIIAVSDMLQSIQVMNVP 593


>sp|Q8FNU0|MURG_COREF
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Corynebacterium efficiens GN=murG PE=3
           SV=1
          Length = 360

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +3

Query: 279 LVLTPLSFPLIWRQHRQRLRKQSVHSIMGFA*LVSIVAYLIQR 407
           LV  P       RQ RQ LR    H+++GF   VS  AYL  R
Sbjct: 76  LVKLPFRVAKSLRQARQVLRDTGAHAVVGFGGYVSAPAYLAAR 118


>sp|Q2GIN1|SYY_ANAPZ Tyrosyl-tRNA synthetase OS=Anaplasma
           phagocytophilum (strain HZ) GN=tyrS PE=3 SV=1
          Length = 412

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = -2

Query: 333 AFACAASR*VEMTKVSALVGLLIRGGMTEYYHQACSGYRMTKHSLHMPGLSSHDICDILQ 154
           A  CA     ++T  +AL G++  G +T Y      G+  T +SLH+  L    +   LQ
Sbjct: 9   ATLCARGYLHQLTDATALDGIMSSGAVTAYI-----GFDCTANSLHIGSLMQIMLLRYLQ 63

Query: 153 RRGALFVLPSGG 118
           R G   ++  GG
Sbjct: 64  RFGHKPIVLLGG 75


>sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3
           OS=Caenorhabditis elegans GN=elpc-3 PE=2 SV=2
          Length = 547

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +3

Query: 45  PSYCKGRPLK--VAYGAGNI-LSIQKSYLLTVR--RKGHLVFVVCRIYHG*KVQAYAVSA 209
           P YC  R L   + YG   + + +Q +Y    R   +GH V  VC  +H  K   Y V  
Sbjct: 220 PDYCLPRHLNDMLLYGCTRLEIGVQSTYEDVARDTNRGHTVKSVCETFHMAKDTGYKVVI 279

Query: 210 *SSDNHYMPD 239
                H MPD
Sbjct: 280 -----HMMPD 284


>sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3
           OS=Caenorhabditis briggsae GN=elpc-3 PE=3 SV=1
          Length = 548

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +3

Query: 45  PSYCKGRPLK--VAYGAGNI-LSIQKSYLLTVR--RKGHLVFVVCRIYHG*KVQAYAVSA 209
           P YC  R L   + YG   + + +Q +Y    R   +GH V  VC  +H  K   Y V  
Sbjct: 220 PDYCLPRHLNDMLLYGCTRLEIGVQSTYEDVARDTNRGHTVKSVCETFHMAKDTGYKVVI 279

Query: 210 *SSDNHYMPD 239
                H MPD
Sbjct: 280 -----HMMPD 284


>sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU1
           (isolate N2) GN=S PE=3 SV=1
          Length = 1351

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -3

Query: 173 IYATYYKDEVPFSSYRQEVG----FLYG*YVASPISHLKWSPLTVRRWQGTTRDAKMFYF 6
           +Y  +Y++   F +Y  +VG    FL+  Y+ + +SH    PLT +     T +  + Y+
Sbjct: 198 LYFHFYQERGVFYAYYADVGMPTTFLFSLYLGTILSHYYVMPLTCKAISSNTDNETLEYW 257


>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo
           sapiens GN=DNAJC13 PE=1 SV=4
          Length = 2243

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 200 CICLDFLAMIYATYYKDEVPFSSYRQEVGFL 108
           C+CL  LA++Y   +++  PF+  R  +G L
Sbjct: 871 CLCLQALAIVYGRCHEEIGPFTDTRYIIGML 901
tr_hit_id B2VTF5
Definition tr|B2VTF5|B2VTF5_PYRTR Predicted protein OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
Align length 58
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916313|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_C06.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2VTF5|B2VTF5_PYRTR Predicted protein OS=Pyrenophora tritici-...    35   2.4  
tr|B7RGC5|B7RGC5_9RHOB Leucyl/phenylalanyl-tRNA--protein transfe...    34   4.1  
tr|Q9LIK0|Q9LIK0_ARATH Pyruvate kinase OS=Arabidopsis thaliana G...    34   4.1  
tr|Q93ZY0|Q93ZY0_ARATH Pyruvate kinase (Fragment) OS=Arabidopsis...    34   4.1  
tr|Q8LEY6|Q8LEY6_ARATH Pyruvate kinase OS=Arabidopsis thaliana P...    34   4.1  
tr|A7NWY0|A7NWY0_VITVI Pyruvate kinase OS=Vitis vinifera GN=GSVI...    34   4.1  
tr|Q6ZLB7|Q6ZLB7_ORYSJ Pyruvate kinase OS=Oryza sativa subsp. ja...    33   9.2  
tr|Q69WE5|Q69WE5_ORYSJ Pyruvate kinase OS=Oryza sativa subsp. ja...    33   9.2  
tr|Q0D867|Q0D867_ORYSJ Pyruvate kinase (Fragment) OS=Oryza sativ...    33   9.2  
tr|B8B7Z2|B8B7Z2_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.2  
tr|B7ZXH0|B7ZXH0_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.2  
tr|B4FEC3|B4FEC3_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.2  
tr|B4FC22|B4FC22_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.2  
tr|A3BH68|A3BH68_ORYSJ Pyruvate kinase OS=Oryza sativa subsp. ja...    33   9.2  

>tr|B2VTF5|B2VTF5_PYRTR Predicted protein OS=Pyrenophora
           tritici-repentis (strain Pt-1C-BFP) GN=PTRG_01919 PE=4
           SV=1
          Length = 192

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
 Frame = -1

Query: 415 FGNRCIR--YATIDTSHANPMIE*TLCFRSLCLCCLQMSGNDK-------GVSTSWSI 269
           F   C+   +       +NP++E  LC RSL L CLQ   ND         V T WS+
Sbjct: 84  FQGECVHDMHTYFQQQDSNPLVEIHLCVRSLLLLCLQDINNDNELKGTITNVVTKWSV 141


>tr|B7RGC5|B7RGC5_9RHOB Leucyl/phenylalanyl-tRNA--protein
           transferase OS=Roseobacter sp. GAI101 GN=aat PE=4 SV=1
          Length = 211

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -2

Query: 291 VSALVGLLIRGGMTEYYHQACSGYRMTKHSLHMPGLSSHDICDILQRRGALFVLPS 124
           ++ LV  L RGG T +  Q  + +  +  ++ +P  + HD+ D  Q+R A FV P+
Sbjct: 141 LACLVDRLRRGGFTLFDTQFLTEHLASLGAIEVPRAAYHDLLDDAQQRSASFVAPA 196


>tr|Q9LIK0|Q9LIK0_ARATH Pyruvate kinase OS=Arabidopsis thaliana
           GN=At3g22960 PE=2 SV=1
          Length = 596

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIAVSDMLQSIQVM +P
Sbjct: 579 LVIAVSDMLQSIQVMNVP 596


>tr|Q93ZY0|Q93ZY0_ARATH Pyruvate kinase (Fragment) OS=Arabidopsis
           thaliana GN=At3g22960 PE=2 SV=2
          Length = 324

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIAVSDMLQSIQVM +P
Sbjct: 307 LVIAVSDMLQSIQVMNVP 324


>tr|Q8LEY6|Q8LEY6_ARATH Pyruvate kinase OS=Arabidopsis thaliana PE=2
           SV=1
          Length = 596

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIAVSDMLQSIQVM +P
Sbjct: 579 LVIAVSDMLQSIQVMNVP 596


>tr|A7NWY0|A7NWY0_VITVI Pyruvate kinase OS=Vitis vinifera
           GN=GSVIVT00020102001 PE=3 SV=1
          Length = 586

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIAVSDMLQSIQVM +P
Sbjct: 569 LVIAVSDMLQSIQVMNVP 586


>tr|Q6ZLB7|Q6ZLB7_ORYSJ Pyruvate kinase OS=Oryza sativa subsp.
           japonica GN=OJ1014_E09.29-1 PE=3 SV=1
          Length = 454

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIA+SDMLQSIQVM +P
Sbjct: 437 LVIALSDMLQSIQVMNVP 454


>tr|Q69WE5|Q69WE5_ORYSJ Pyruvate kinase OS=Oryza sativa subsp.
           japonica GN=OJ1014_E09.29-2 PE=2 SV=1
          Length = 418

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIA+SDMLQSIQVM +P
Sbjct: 401 LVIALSDMLQSIQVMNVP 418


>tr|Q0D867|Q0D867_ORYSJ Pyruvate kinase (Fragment) OS=Oryza sativa
           subsp. japonica GN=Os07g0181000 PE=3 SV=1
          Length = 561

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIA+SDMLQSIQVM +P
Sbjct: 544 LVIALSDMLQSIQVMNVP 561


>tr|B8B7Z2|B8B7Z2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25125 PE=4 SV=1
          Length = 581

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 414 LVIAVSDMLQSIQVMQIP 361
           LVIA+SDMLQSIQVM +P
Sbjct: 564 LVIALSDMLQSIQVMNVP 581