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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916316
Clone id YMU001_000086_C09
Library
Length 189
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_C09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAAAGAGTCAGCCACGTTCTTCAAAGGCGGATGAAGAGCGGGATGCCTTGAAATCCCGG
AGACATTGTAACAATTGTGGAGAGAAGGGTCAATACCGGAGAAAATCTCCTTTGTGGAGA
GCGAAGTTAGTTGGAGTGATTCTGGCACCTGCCTTTATTACACAGATGGAGATCCCACAT
ATCAGTTAC
■■Homology search results ■■ -
sp_hit_id Q9JXZ9
Definition sp|Q9JXZ9|NRDR_NEIMB Transcriptional repressor nrdR OS=Neisseria meningitidis serogroup B
Align length 22
Score (bit) 32.7
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916316|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_C09.
         (189 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JXZ9|NRDR_NEIMB Transcriptional repressor nrdR OS=Neisseria...    33   0.59 
sp|Q9JVW7|NRDR_NEIMA Transcriptional repressor nrdR OS=Neisseria...    33   0.59 
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania maj...    30   2.9  
sp|Q1AS42|NRDR_RUBXD Transcriptional repressor nrdR OS=Rubrobact...    30   3.8  
sp|Q92SI9|SYW_RHIME Tryptophanyl-tRNA synthetase OS=Rhizobium me...    29   6.5  
sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae GN...    29   8.5  
sp|Q45774|CR1BC_BACTM Pesticidal crystal protein cry1Bc OS=Bacil...    29   8.5  

>sp|Q9JXZ9|NRDR_NEIMB Transcriptional repressor nrdR OS=Neisseria
          meningitidis serogroup B GN=nrdR PE=3 SV=1
          Length = 154

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +1

Query: 22 SKADEERDALKSRRHCNNCGEK 87
          S+  EER+A++ RRHC NCG++
Sbjct: 16 SRLMEERNAVRRRRHCPNCGKR 37


>sp|Q9JVW7|NRDR_NEIMA Transcriptional repressor nrdR OS=Neisseria
          meningitidis serogroup A GN=nrdR PE=3 SV=1
          Length = 154

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +1

Query: 22 SKADEERDALKSRRHCNNCGEK 87
          S+  EER+A++ RRHC NCG++
Sbjct: 16 SRLMEERNAVRRRRHCPNCGKR 37


>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major
           GN=HEXBP PE=4 SV=1
          Length = 271

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 19  SSKADEERDALKSRRHCNNCGEKGQYRRKSP 111
           S   D +R   +S   C NCG++G Y R+ P
Sbjct: 2   SETEDVKRPRTESSTSCRNCGKEGHYARECP 32


>sp|Q1AS42|NRDR_RUBXD Transcriptional repressor nrdR OS=Rubrobacter
           xylanophilus (strain DSM 9941 / NBRC 16129) GN=nrdR PE=3
           SV=1
          Length = 156

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 22  SKADEERDALKSRRHCNNCGEK-GQYRRKSPL 114
           S+  E +DA++ RR C  CG++   Y R+ PL
Sbjct: 16  SRLSEAKDAIRRRRECLACGKRFTTYERREPL 47


>sp|Q92SI9|SYW_RHIME Tryptophanyl-tRNA synthetase OS=Rhizobium
           meliloti GN=trpS PE=3 SV=1
          Length = 354

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 133 QLTSLSTKEIFSGIDPSLHNCYNVSGISRHPAL 35
           Q+ S++   I SGIDP  H  +N S + +H  L
Sbjct: 61  QIRSIAAAFIASGIDPEKHIVFNQSAVPQHAEL 93


>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae
           GN=AIR2 PE=1 SV=1
          Length = 344

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 28  ADEERDALKSRR-HCNNCGEKGQYRRKSP 111
           +D+++DA+K     CNNC ++G  ++  P
Sbjct: 49  SDDDKDAIKEAAPKCNNCSQRGHLKKDCP 77


>sp|Q45774|CR1BC_BACTM Pesticidal crystal protein cry1Bc OS=Bacillus
            thuringiensis subsp. morrisoni GN=cry1Bc PE=2 SV=1
          Length = 1233

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 15   TFFKGG*RAGCLEIPETL*QLWREGSIPEKISF---VESEVSWSDSGTCLYYTDGDPT 179
            T +K G   GC+ I E       E +  ++++F   VE E+   D+GTC YYT+   T
Sbjct: 1084 TAYKEGYGEGCVTIHEI-----EENT--DELNFKNRVEEEIYPPDTGTCKYYTENQGT 1134
tr_hit_id Q0JJV3
Definition tr|Q0JJV3|Q0JJV3_ORYSJ Os01g0715000 protein (Fragment) OS=Oryza sativa subsp. japonica
Align length 63
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916316|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_C09.
         (189 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0JJV3|Q0JJV3_ORYSJ Os01g0715000 protein (Fragment) OS=Oryza ...    34   3.2  
tr|A2ZX73|A2ZX73_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|B8A8P0|B8A8P0_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|A9M1U2|A9M1U2_NEIM0 ATP-cone domain protein OS=Neisseria meni...    33   9.3  

>tr|Q0JJV3|Q0JJV3_ORYSJ Os01g0715000 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0715000 PE=4 SV=1
          Length = 198

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 1   GKSQPRSSKADEERDALKSRRHCNNCGEKGQYRRKSPLWRAKLVGV-ILAPAFITQMEIP 177
           G +     K   E +  +  RHC+ CGE+G  RR  P  R+  V V + A  +I + +  
Sbjct: 108 GHNSRTCGKPKSENECQRQPRHCSQCGERGHNRRNCP--RSTTVEVEVGASGYIVKQDNV 165

Query: 178 HIS 186
           H S
Sbjct: 166 HSS 168


>tr|A2ZX73|A2ZX73_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_003145 PE=4 SV=1
          Length = 656

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 1   GKSQPRSSKADEERDALKSRRHCNNCGEKGQYRRKSPLWRAKLVGV-ILAPAFITQMEIP 177
           G +     K   E +  +  RHC+ CGE+G  RR  P  R+  V V + A  +I + +  
Sbjct: 347 GHNSRTCGKPKSENECQRQPRHCSQCGERGHNRRNCP--RSTTVEVEVGASGYIVKQDNV 404

Query: 178 HIS 186
           H S
Sbjct: 405 HSS 407


>tr|B8A8P0|B8A8P0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03500 PE=4 SV=1
          Length = 360

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   GKSQPRSSKADEERDALKSRRHCNNCGEKGQYRRKSP 111
           G +     K   E +  +  RHC+ CGE+G  RR  P
Sbjct: 309 GHNSRTCGKPKSENECQRQPRHCSQCGERGHNRRNCP 345


>tr|A9M1U2|A9M1U2_NEIM0 ATP-cone domain protein OS=Neisseria
           meningitidis serogroup C (strain 053442) GN=NMCC_0412
           PE=4 SV=1
          Length = 180

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +1

Query: 22  SKADEERDALKSRRHCNNCGEK 87
           S+  EER+A++ RRHC NCG++
Sbjct: 42  SRLMEERNAVRRRRHCPNCGKR 63