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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916320
Clone id YMU001_000086_D01
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGCAAGGTTGGTTGTTTAAGACCATAGGAAGAGGAAATCAGTTCTACTATGAGTACTCT
CAGTTTTACATCTCACATGTTACATAGAAGTATACTGGTAGGCTTCCTCTCCTAATGAGA
GCGTATAAGGCCAAACATTCATCCCTGATCCAGCGGGTGCCTTTGAGCTTTAGTGATGTA
AAACCTCCAGATCTGACCCAATAGGTACTACTAATGAGCTTGCAAATTGAAGCCCTTGAT
GAGAAGCACAATGAGGTCTCTTATCTGCCTGGTTTGCAACATCAGCTCTATCTTATAATC
GTCCTCTGTCCTGAGCCTTAGACGATGTTGGTTGCTCTTATCCACTTCCACGTAAAATGG
AGGCGTGTAACGAAGCTCCATGCCCAGGAAGGCCTTTGAACCAGGCTTTATTGCTTTGAT
CCGCCTTTTATTGATATCTATTAAGCGCTTTTCAAAGTGCC
■■Homology search results ■■ -
sp_hit_id A6Q576
Definition sp|A6Q576|SYA_NITSB Alanyl-tRNA synthetase OS=Nitratiruptor sp. (strain SB155-2)
Align length 70
Score (bit) 33.5
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916320|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_D01.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6Q576|SYA_NITSB Alanyl-tRNA synthetase OS=Nitratiruptor sp. ...    33   0.45 
sp|Q9H324|ATS10_HUMAN A disintegrin and metalloproteinase with t...    30   5.0  
sp|Q6GM71|LRWD1_XENLA Leucine-rich repeat and WD repeat-containi...    30   6.5  
sp|P58459|ATS10_MOUSE A disintegrin and metalloproteinase with t...    29   8.5  

>sp|A6Q576|SYA_NITSB Alanyl-tRNA synthetase OS=Nitratiruptor sp.
           (strain SB155-2) GN=alaS PE=3 SV=1
          Length = 850

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = -3

Query: 444 LIDINKRRIKAIKPGSKAFLGMELRYTPPFYVEVDKSNQHRLRLRTEDDYKIELMLQTRQ 265
           L+D + ++ +++KPG K ++ +E     PFY E       R  +R  +  KI  +L T++
Sbjct: 461 LLDESFKKCESLKPGQKGWILLE---ETPFYAESGGQIGDRGEIRLYEGEKIAKVLDTKK 517

Query: 264 IRDLIVLLIK 235
             DL + L++
Sbjct: 518 FFDLNMSLVE 527


>sp|Q9H324|ATS10_HUMAN A disintegrin and metalloproteinase with
           thrombospondin motifs 10 OS=Homo sapiens GN=ADAMTS10
           PE=1 SV=2
          Length = 1103

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 315 ALDDVGCSYPLPRKMEACNEAPCP 386
           ALDD  C  P P  +EAC+   CP
Sbjct: 922 ALDDSACPQPRPPVLEACHGPTCP 945


>sp|Q6GM71|LRWD1_XENLA Leucine-rich repeat and WD repeat-containing
           protein 1 OS=Xenopus laevis GN=lrwd1 PE=2 SV=1
          Length = 722

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 88  KYTGRLPLLMRAYKAKHSSLIQRVPLSFSDVKPPDLTQ*VLLMSLQIEALDEKHNEVSYL 267
           K T  L L     K  H   ++++ LS   +   DL Q +    + ++ LD  HN +S L
Sbjct: 3   KLTTELLLKKGLPKCSHLKDLKKLNLSKMQLDLKDLDQKLFSQMVNLDELDISHNTLSDL 62

Query: 268 PG 273
           PG
Sbjct: 63  PG 64


>sp|P58459|ATS10_MOUSE A disintegrin and metalloproteinase with
           thrombospondin motifs 10 OS=Mus musculus GN=Adamts10
           PE=2 SV=3
          Length = 1104

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 315 ALDDVGCSYPLPRKMEACNEAPCP 386
           ALDD  C  P P  +EAC    CP
Sbjct: 922 ALDDSACPQPRPPVLEACQGPMCP 945
tr_hit_id A9RYJ3
Definition tr|A9RYJ3|A9RYJ3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 79
Score (bit) 89.0
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916320|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_D01.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RYJ3|A9RYJ3_PHYPA Predicted protein OS=Physcomitrella paten...    89   1e-16
tr|A9TP35|A9TP35_PHYPA Predicted protein OS=Physcomitrella paten...    84   3e-15
tr|Q69VA2|Q69VA2_ORYSJ Putative leucine rich repeat protein OS=O...    82   1e-14
tr|Q0D8L5|Q0D8L5_ORYSJ Os07g0148800 protein (Fragment) OS=Oryza ...    82   1e-14
tr|B8B7B1|B8B7B1_ORYSI Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|A3BGK9|A3BGK9_ORYSJ Putative uncharacterized protein OS=Oryza...    82   1e-14
tr|A7Q1D2|A7Q1D2_VITVI Chromosome chr10 scaffold_43, whole genom...    80   4e-14
tr|Q676X1|Q676X1_HYAOR LRR (Fragment) OS=Hyacinthus orientalis P...    79   9e-14
tr|Q0WPR3|Q0WPR3_ARATH Auxin-induced protein (Fragment) OS=Arabi...    76   7e-13
tr|Q00NU6|Q00NU6_ARATH AIR9 protein OS=Arabidopsis thaliana GN=A...    76   7e-13
tr|O82441|O82441_ARATH Putative uncharacterized protein AIR9 (Fr...    76   7e-13
tr|O64588|O64588_ARATH Putative uncharacterized protein At2g3468...    76   7e-13
tr|A7F0I0|A7F0I0_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.2  

>tr|A9RYJ3|A9RYJ3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_121394 PE=4 SV=1
          Length = 1416

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 41/79 (51%), Positives = 65/79 (82%), Gaps = 3/79 (3%)
 Frame = -3

Query: 453  EKRLIDINKRRIKAIKPGSKA-FLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKIEL 283
            E+R++D+NK+R+K +KPGSK  F   ELR  YTPPF+VEV +++QHRL++  + + +++L
Sbjct: 1324 ERRVLDVNKKRVKVVKPGSKTHFASNELRGTYTPPFHVEVFRNDQHRLKIVMDSENEVDL 1383

Query: 282  MLQTRQIRDLIVLLIKGFN 226
            M+Q+R IRD+IVL+I+GF+
Sbjct: 1384 MVQSRHIRDVIVLVIRGFS 1402


>tr|A9TP35|A9TP35_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_148415 PE=4 SV=1
          Length = 1635

 Score = 84.3 bits (207), Expect = 3e-15
 Identities = 38/79 (48%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
 Frame = -3

Query: 453  EKRLIDINKRRIKAIKPGSKA-FLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKIEL 283
            E+R++D+N++R+K +KPGSK  F   ELR  Y PPF+VEV +++ HR+++  + + ++EL
Sbjct: 1543 ERRVLDVNRKRVKVVKPGSKTNFASTELRGSYAPPFHVEVFRNDPHRVKIVMDSENEVEL 1602

Query: 282  MLQTRQIRDLIVLLIKGFN 226
            M+Q+R IRD+IVL+I+GF+
Sbjct: 1603 MVQSRHIRDIIVLVIRGFS 1621


>tr|Q69VA2|Q69VA2_ORYSJ Putative leucine rich repeat protein OS=Oryza
            sativa subsp. japonica GN=P0022E03.37 PE=4 SV=1
          Length = 1689

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 36/79 (45%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
 Frame = -3

Query: 459  HFEKRLIDINKRRIKAIKPGSKA-FLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKI 289
            H E+R++++N++RIK +KPGSKA F   E+R  Y PPF+VE+ +++QHR ++  + + ++
Sbjct: 1593 HLERRILEVNRKRIKVVKPGSKASFPTTEVRGTYVPPFHVELYRNDQHRFKIVVDGESEV 1652

Query: 288  ELMLQTRQIRDLIVLLIKG 232
            +LM+QTR +RD+I+L+I+G
Sbjct: 1653 DLMVQTRHMRDVIILVIRG 1671


>tr|Q0D8L5|Q0D8L5_ORYSJ Os07g0148800 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os07g0148800 PE=4 SV=1
          Length = 376

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 36/79 (45%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
 Frame = -3

Query: 459 HFEKRLIDINKRRIKAIKPGSKA-FLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKI 289
           H E+R++++N++RIK +KPGSKA F   E+R  Y PPF+VE+ +++QHR ++  + + ++
Sbjct: 280 HLERRILEVNRKRIKVVKPGSKASFPTTEVRGTYVPPFHVELYRNDQHRFKIVVDGESEV 339

Query: 288 ELMLQTRQIRDLIVLLIKG 232
           +LM+QTR +RD+I+L+I+G
Sbjct: 340 DLMVQTRHMRDVIILVIRG 358


>tr|B8B7B1|B8B7B1_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_24899 PE=4 SV=1
          Length = 1679

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 36/79 (45%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
 Frame = -3

Query: 459  HFEKRLIDINKRRIKAIKPGSKA-FLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKI 289
            H E+R++++N++RIK +KPGSKA F   E+R  Y PPF+VE+ +++QHR ++  + + ++
Sbjct: 1583 HLERRILEVNRKRIKVVKPGSKASFPTTEVRGTYVPPFHVELYRNDQHRFKIVVDGESEV 1642

Query: 288  ELMLQTRQIRDLIVLLIKG 232
            +LM+QTR +RD+I+L+I+G
Sbjct: 1643 DLMVQTRHMRDVIILVIRG 1661


>tr|A3BGK9|A3BGK9_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_022181 PE=4 SV=1
          Length = 1813

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 36/79 (45%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
 Frame = -3

Query: 459  HFEKRLIDINKRRIKAIKPGSKA-FLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKI 289
            H E+R++++N++RIK +KPGSKA F   E+R  Y PPF+VE+ +++QHR ++  + + ++
Sbjct: 1717 HLERRILEVNRKRIKVVKPGSKASFPTTEVRGTYVPPFHVELYRNDQHRFKIVVDGESEV 1776

Query: 288  ELMLQTRQIRDLIVLLIKG 232
            +LM+QTR +RD+I+L+I+G
Sbjct: 1777 DLMVQTRHMRDVIILVIRG 1795


>tr|A7Q1D2|A7Q1D2_VITVI Chromosome chr10 scaffold_43, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00028406001
            PE=4 SV=1
          Length = 1717

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 35/78 (44%), Positives = 63/78 (80%), Gaps = 3/78 (3%)
 Frame = -3

Query: 456  FEKRLIDINKRRIKAIKPGSK-AFLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKIE 286
            FE+R++++N++R+K +KPGSK +F   E+R  Y PPF+VE+ +++QHRLR+  + + +++
Sbjct: 1622 FERRILEVNRKRVKVVKPGSKTSFPTTEIRGSYAPPFHVELFRNDQHRLRIVVDSENEVD 1681

Query: 285  LMLQTRQIRDLIVLLIKG 232
            LM+ +R +RD+IVL+I+G
Sbjct: 1682 LMVHSRHLRDVIVLVIRG 1699


>tr|Q676X1|Q676X1_HYAOR LRR (Fragment) OS=Hyacinthus orientalis PE=2
           SV=1
          Length = 200

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 35/79 (44%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
 Frame = -3

Query: 459 HFEKRLIDINKRRIKAIKPGSK-AFLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKI 289
           + E+R++++N++R+K ++PGSK +F   E+R  Y PPF+VE+ +++QHR ++  + + ++
Sbjct: 104 NLERRILEVNRKRVKVVRPGSKTSFPTTEIRGTYAPPFHVELYRNDQHRFKIVVDSENEV 163

Query: 288 ELMLQTRQIRDLIVLLIKG 232
           ELM+QTR  RDLIVL+I+G
Sbjct: 164 ELMVQTRHTRDLIVLVIRG 182


>tr|Q0WPR3|Q0WPR3_ARATH Auxin-induced protein (Fragment)
            OS=Arabidopsis thaliana GN=At2g34680 PE=2 SV=1
          Length = 947

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 34/80 (42%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
 Frame = -3

Query: 459  HFEKRLIDINKRRIKAIKPGSK-AFLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKI 289
            + E+R++++N++RIK +KPGSK +F   E+R  Y PPF+VE  +++Q RLR+  + + ++
Sbjct: 851  NLERRMLEMNRKRIKVVKPGSKTSFATTEVRGSYGPPFHVETFRNDQRRLRIVVDSENEV 910

Query: 288  ELMLQTRQIRDLIVLLIKGF 229
            ++++Q+R +RD+IVL+I+GF
Sbjct: 911  DIVVQSRHLRDVIVLVIRGF 930


>tr|Q00NU6|Q00NU6_ARATH AIR9 protein OS=Arabidopsis thaliana GN=AIR9
            PE=2 SV=1
          Length = 1708

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 34/80 (42%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
 Frame = -3

Query: 459  HFEKRLIDINKRRIKAIKPGSK-AFLGMELR--YTPPFYVEVDKSNQHRLRLRTEDDYKI 289
            + E+R++++N++RIK +KPGSK +F   E+R  Y PPF+VE  +++Q RLR+  + + ++
Sbjct: 1612 NLERRMLEMNRKRIKVVKPGSKTSFATTEVRGSYGPPFHVETFRNDQRRLRIVVDSENEV 1671

Query: 288  ELMLQTRQIRDLIVLLIKGF 229
            ++++Q+R +RD+IVL+I+GF
Sbjct: 1672 DIVVQSRHLRDVIVLVIRGF 1691