BP916322 |
Clone id |
YMU001_000086_D04 |
Library |
YMU01 |
Length |
455 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000086_D04. |
Accession |
BP916322 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CCTTTGACAAGTCCAAGGAGTCCTTGGACAAAGAGATTGAAGACAAGGGTGCTAATCTGA ACCCCAAAGTTGTTGAGATATACAAATCTTCCTCAACATTCATCGTCAAGAAATTGCTCA AGGAACCCAACGAGGCCAATGTAAAGGGAAACCCAGAGGCAGTGCAAGGAACCCTTCAGG AGCTTGTGAAAGCAGGCACAGTGGTTTTACAAAACCTAATTTGGTGCAACCACAGATTAA ATCATGGTTGTCAGATGGAGAAGGTTCTGTAATTGTACAGAGAGTATGCATCGTTGCGGG ACGGATTAGTTTTTATCTGACTTGGGTCCTTTTAGCAGTATAAATCATGCCGGTGTGATT AGGCTTACTTTGTTGAAACGTGATCAGATGGACTGATTATGATGATTTGAAAGTTGATTT ATTCCGACGGTGGGACTGAAGATCATTGAGGGGTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0JPA6 |
Definition |
sp|Q0JPA6|SRS1_ORYSJ Salt stress root protein RS1 OS=Oryza sativa subsp. japonica |
Align length |
61 |
Score (bit) |
45.4 |
E-value |
0.0001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916322|Adiantum capillus-veneris mRNA, clone: YMU001_000086_D04. (455 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q0JPA6|SRS1_ORYSJ Salt stress root protein RS1 OS=Oryza sativ... 45 1e-04 sp|A2WMG6|SRS1_ORYSI Salt stress root protein RS1 OS=Oryza sativ... 45 1e-04 sp|Q9N1A7|STP2_PANTR Nuclear transition protein 2 (Fragment) OS=... 32 1.3 sp|A8F5H5|GATB_THELT Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 32 1.3 sp|A5IMT3|GATB_THEP1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 32 1.7 sp|Q9K8U9|O16G_BACHD Oligo-1,6-glucosidase OS=Bacillus haloduran... 31 2.9 sp|Q9X100|GATB_THEMA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 3.8 sp|Q59037|SMC_METJA Chromosome partition protein smc homolog OS=... 30 4.9 sp|Q7UK56|GATB_RHOBA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 4.9 sp|Q3AD35|GATB_CARHZ Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 4.9 sp|Q58194|HMD_METJA 5,10-methenyltetrahydromethanopterin hydroge... 30 6.4 sp|Q4PHC3|MVP1_USTMA Sorting nexin MVP1 OS=Ustilago maydis GN=MV... 29 8.4
>sp|Q0JPA6|SRS1_ORYSJ Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1 Length = 204
Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Frame = +3
Query: 12 SKESLDKEIEDKGANLNPKVVEIYKSSSTFIVKKLLKEPNEAN-VKGNPEAVQGTLQELV 188 +KE + KEI+DK L PKVVE+ +SS I K LLK+ A+ +K N AV L+EL Sbjct: 34 NKEEIGKEIDDKKTELEPKVVEVVESSPPEI-KALLKDKKTASKIKKNGPAVTKFLEELA 92
Query: 189 K 191 K Sbjct: 93 K 93
>sp|A2WMG6|SRS1_ORYSI Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1 Length = 204
Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 1/61 (1%) Frame = +3
Query: 12 SKESLDKEIEDKGANLNPKVVEIYKSSSTFIVKKLLKEPNEAN-VKGNPEAVQGTLQELV 188 +KE + KEI+DK L PKVVE+ +SS I K LLK+ A+ +K N AV L+EL Sbjct: 34 NKEEIGKEIDDKKTELEPKVVEVVESSPPEI-KALLKDKKTASKIKKNGPAVTKFLEELA 92
Query: 189 K 191 K Sbjct: 93 K 93
>sp|Q9N1A7|STP2_PANTR Nuclear transition protein 2 (Fragment) OS=Pan troglodytes GN=TNP2 PE=2 SV=1 Length = 133
Score = 32.0 bits (71), Expect = 1.3 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Frame = +2
Query: 56 SEPQSC*DIQIFLNIHRQEIAQGTQRGQCKGKPRGSA------RNPSGACESRHSGFTKP 217 S+PQSC HRQ +Q ++ C + R S+ RNP+GA S P Sbjct: 19 SQPQSC-----TCTRHRQTFSQSCRQSHCGSRSRSSSQSPASHRNPTGAHSSSGHQSQSP 73
Query: 218 NLVQP 232 N P Sbjct: 74 NTSPP 78
>sp|A8F5H5|GATB_THELT Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=gatB PE=3 SV=1 Length = 478
Score = 32.0 bits (71), Expect = 1.3 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = +3
Query: 12 SKESLDKEIEDKGANLNPKVVEIYKSSST----FIVKKLLKEPNEANVKGNPEAVQGTLQ 179 S E+L + I K NPK VE YKS T F V +++KE A NP+ V ++ Sbjct: 418 SDENLLENIVKKVLEDNPKAVEQYKSGKTGVIGFFVGQVMKETKGA---ANPQVVNKIIK 474
Query: 180 ELV 188 +++ Sbjct: 475 QIL 477
>sp|A5IMT3|GATB_THEP1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=gatB PE=3 SV=1 Length = 482
Score = 31.6 bits (70), Expect = 1.7 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Frame = +3
Query: 12 SKESLDKEIEDKGANLNPKVVEIYKS----SSTFIVKKLLKEPNEANVKGNPEAVQGTLQ 179 S E L +E+ K NPK V+ YKS ++ F V +++ E K NPE +Q Sbjct: 420 SDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMR---ETKGKANPELTNRIIQ 476
Query: 180 ELVK 191 +L++ Sbjct: 477 KLLE 480
>sp|Q9K8U9|O16G_BACHD Oligo-1,6-glucosidase OS=Bacillus halodurans GN=malL PE=3 SV=1 Length = 561
Score = 30.8 bits (68), Expect = 2.9 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 12/67 (17%) Frame = +2
Query: 92 LNIHRQEIAQG----TQRGQCKGKPRGSARNPSGACESRHSGFT--------KPNLVQPQ 235 LN+++++ AQG T K R +AR P E++H GFT PN + Sbjct: 390 LNMYKEKRAQGVPHETLMASIHAKGRDNARTPMQWDETKHGGFTDGTPWLEVNPNYKEIN 449
Query: 236 IKSWLSD 256 +K L D Sbjct: 450 VKQALKD 456
>sp|Q9X100|GATB_THEMA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thermotoga maritima GN=gatB PE=3 SV=1 Length = 482
Score = 30.4 bits (67), Expect = 3.8 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Frame = +3
Query: 18 ESLDKEIEDKGANLNPKVVEIYKS----SSTFIVKKLLKEPNEANVKGNPEAVQGTLQEL 185 E L +E+ K NPK V+ YKS ++ F V +++ E K NPE +Q+L Sbjct: 422 EKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMR---ETKGKANPELTNRIIQKL 478
Query: 186 VK 191 ++ Sbjct: 479 LE 480
>sp|Q59037|SMC_METJA Chromosome partition protein smc homolog OS=Methanocaldococcus jannaschii GN=MJ1643 PE=3 SV=2 Length = 1169
Score = 30.0 bits (66), Expect = 4.9 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%) Frame = +3
Query: 6 DKSKESLDKEIEDKGANLN-----PKVVEIYKSSSTFIVKKLLKEPNEANVKGNPEAVQG 170 +K K L EI DKG L PK+ E+ K S I KK++ E N + K + E Sbjct: 813 EKEKAKLKNEI-DKGLTLVKEILIPKIEELNKKVSELINKKVILEKNISFYKESIEKNLS 871
Query: 171 TLQELVKAGTVVLQNL 218 L+E K + +NL Sbjct: 872 ILEEKRKRYEELAKNL 887
>sp|Q7UK56|GATB_RHOBA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Rhodopirellula baltica GN=gatB PE=3 SV=1 Length = 497
Score = 30.0 bits (66), Expect = 4.9 Identities = 20/61 (32%), Positives = 31/61 (50%) Frame = +3
Query: 6 DKSKESLDKEIEDKGANLNPKVVEIYKSSSTFIVKKLLKEPNEANVKGNPEAVQGTLQEL 185 D + ESL KE+ NP+VVE K V L+ + + N +P+AV+ L +L Sbjct: 438 DDALESLCKEL----LAANPQVVEDVKGGKQQAVGALIGQAKKKNPNASPQAVRQLLIDL 493
Query: 186 V 188 + Sbjct: 494 I 494
>sp|Q3AD35|GATB_CARHZ Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gatB PE=3 SV=1 Length = 481
Score = 30.0 bits (66), Expect = 4.9 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +3
Query: 36 IEDKGANLNPKVVEIYKSSST----FIVKKLLKEPNEANVKGNPEAVQGTLQE 182 + DK NPK VE YK+ F+V +++K E + NPEAV L++ Sbjct: 427 VVDKVIAANPKAVEDYKNGKEKALGFLVGQIMK---ETRGRANPEAVNQLLRD 476
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2L6T2 |
Definition |
tr|Q2L6T2|Q2L6T2_ARATH Uncharacterized protein At4g20260.4 OS=Arabidopsis thaliana |
Align length |
63 |
Score (bit) |
63.9 |
E-value |
4.0e-09 |
Report |
|