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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916324
Clone id YMU001_000086_D07
Library
Length 450
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TATTACCTGCAGGTCTCGTCTTATGATGAGATGAAGGGAGGGGGAAAGAGAAGGAAGTGG
ATGATCAGAATGAAGAGAATGTAGGATTTTGCATTCGTGCCAGATACTGAAGAGGTACAG
GAACCATTTGGGGCTAATCGTTTAGATGGAGACAATGATGGAATAGAAATTCTAGCTGAG
GTAGATGTTGAGCTTACTGGTAACTTACAGAGCATGTCGATGCTGCAACCAGATTTGCAG
ATGGAGTCATCCATATTGATGATGAGAGACCACTACAGCGTGCTGCCCCTAATTCCAGGA
CCATCTTCAACTTGACAGGGTCGCCTGCGTGCTAGAGCATAAGTTTGTAAATGACAAGCA
TAAGTGGAATGCTCGATTTCAAGGCGGGTTTTATGCAGCCAAACATTGCCTGGCAAATAT
AGAGAAGGGTCATGGAGTGCCAGTCTATGT
■■Homology search results ■■ -
sp_hit_id Q9DAZ9
Definition sp|Q9DAZ9|ZFY19_MOUSE Zinc finger FYVE domain-containing protein 19 OS=Mus musculus
Align length 43
Score (bit) 31.6
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916324|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_D07.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DAZ9|ZFY19_MOUSE Zinc finger FYVE domain-containing protein...    32   1.6  
sp|P51882|CD5_RAT T-cell surface glycoprotein CD5 OS=Rattus norv...    31   2.8  
sp|Q0P4Z1|F134C_XENTR Protein FAM134C OS=Xenopus tropicalis GN=f...    30   4.7  
sp|Q54PM6|Y8605_DICDI Uncharacterized protein DDB_G0284459 OS=Di...    30   6.1  
sp|Q9Z175|LOXL3_MOUSE Lysyl oxidase homolog 3 OS=Mus musculus GN...    30   6.1  
sp|Q54RU3|Y1842_DICDI Putative uncharacterized protein DDB_G0283...    29   8.0  
sp|Q9VKJ1|MPND_DROME MPN domain-containing protein CG4751 OS=Dro...    29   8.0  

>sp|Q9DAZ9|ZFY19_MOUSE Zinc finger FYVE domain-containing protein 19
           OS=Mus musculus GN=Zfyve19 PE=1 SV=1
          Length = 389

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 332 ARRRPCQVE-DGPGIRGSTL*WSLIINMDDSICKSGCSIDMLC 207
           +R +PC+ E +GP      L W  I N D ++  +GC  D+ C
Sbjct: 317 SRAQPCKAEMEGPQAEEEELPWCCICNEDATLRCAGCDGDLYC 359


>sp|P51882|CD5_RAT T-cell surface glycoprotein CD5 OS=Rattus
           norvegicus GN=Cd5 PE=2 SV=1
          Length = 491

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = -2

Query: 311 VEDGPGIRGSTL*WSLI---INMDDSICKS---GCSIDMLCKLPVSSTSTSARISIPSLS 150
           VE   G RG T+ +      +++ + ICKS   G  +  L ++  + T   A +  P   
Sbjct: 172 VEFYNGSRGGTILYKAKARPVDLGNLICKSLQCGSFLTHLSRIETAGTPAPAELRDPRPL 231

Query: 149 PSKRLAPNGSCTS 111
           P +  A NGSCTS
Sbjct: 232 PIRWEAQNGSCTS 244


>sp|Q0P4Z1|F134C_XENTR Protein FAM134C OS=Xenopus tropicalis
           GN=fam134c PE=2 SV=1
          Length = 457

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -3

Query: 385 ALKSSIPLMLVIYKLML*HAGDPVKLKMVLELGAARCSGLSSSIW 251
           AL S   + LV + LM+    D  K K+  ELGAAR S L +  W
Sbjct: 82  ALTSLRIIFLVAFGLMIIICADQWKNKLWPELGAARASELENESW 126


>sp|Q54PM6|Y8605_DICDI Uncharacterized protein DDB_G0284459
           OS=Dictyostelium discoideum GN=DDB_G0284459 PE=4 SV=1
          Length = 1224

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = -2

Query: 194 SSTSTSARISIPSLSPSKRLAPNGSCTSSVSGTNAKS 84
           ++TSTS+  S+PSLS S    P  S +SS S +++ S
Sbjct: 665 TTTSTSSSSSLPSLSSSSSSLPLPSSSSSSSSSSSSS 701


>sp|Q9Z175|LOXL3_MOUSE Lysyl oxidase homolog 3 OS=Mus musculus
           GN=Loxl3 PE=2 SV=1
          Length = 754

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 298 LELGAARCSGLSSSIWMTPSANLVAASTCSVS 203
           + L   RCSG   S+W  PS N + A  CS S
Sbjct: 370 IHLSEVRCSGQEPSLWRCPSKN-ITAEDCSHS 400


>sp|Q54RU3|Y1842_DICDI Putative uncharacterized protein DDB_G0283051
           OS=Dictyostelium discoideum GN=DDB_G0283051 PE=4 SV=1
          Length = 137

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 248 DSICKSGCSIDMLCKLPVSSTSTSARISIPSLSPSKRLAPNGSCTSSVSGTNAKS 84
           ++IC   C I  + K+   S    +      LSP++  A N + ++S S +N+ S
Sbjct: 13  NNICYDNCGIKFILKVFAQSKECVSNSVFAQLSPTQSTATNTTYSNSNSNSNSNS 67


>sp|Q9VKJ1|MPND_DROME MPN domain-containing protein CG4751
            OS=Drosophila melanogaster GN=CG4751 PE=1 SV=1
          Length = 1412

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 215  MLCKLPVSSTSTSARISIPSLSPS-KRLAPNGSCTSSVSG 99
            M+ K P S+T +SAR    S SP+ +RL P  S +S  SG
Sbjct: 1269 MMMKPPKSTTPSSARTRESSASPALERLTPTKSASSGGSG 1308
tr_hit_id Q0I6Y8
Definition tr|Q0I6Y8|Q0I6Y8_SYNS3 DNA repair protein radA OS=Synechococcus sp. (strain CC9311)
Align length 44
Score (bit) 38.1
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916324|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_D07.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0I6Y8|Q0I6Y8_SYNS3 DNA repair protein radA OS=Synechococcus ...    38   0.22 
tr|O67681|O67681_AQUAE Formyltetrahydrofolate deformylase OS=Aqu...    37   0.65 
tr|A1ZNL6|A1ZNL6_9SPHI PKD domain protein OS=Microscilla marina ...    35   2.5  
tr|B4LQH2|B4LQH2_DROVI GJ13201 OS=Drosophila virilis GN=GJ13201 ...    34   4.2  
tr|Q21M75|Q21M75_SACD2 Putative pectin/pectate lyase OS=Saccharo...    33   7.2  
tr|A4IHD3|A4IHD3_XENTR LOC100124830 protein OS=Xenopus tropicali...    33   9.4  

>tr|Q0I6Y8|Q0I6Y8_SYNS3 DNA repair protein radA OS=Synechococcus sp.
           (strain CC9311) GN=radA PE=3 SV=1
          Length = 465

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 18/44 (40%), Positives = 30/44 (68%)
 Frame = +1

Query: 139 RLDGDNDGIEILAEVDVELTGNLQSMSMLQPDLQMESSILMMRD 270
           RL G+++G+++LAE D+EL   L+ +  LQPD+ +  SI  + D
Sbjct: 141 RLGGESEGLQLLAETDLELV--LEELEALQPDVAIIDSIQALHD 182


>tr|O67681|O67681_AQUAE Formyltetrahydrofolate deformylase
           OS=Aquifex aeolicus GN=purU PE=4 SV=1
          Length = 283

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +1

Query: 88  FAFVPDTEEVQEPFGANRLDGDNDGIEILAEVDVELTGNLQSMSMLQPDLQMESSILMMR 267
           F  +P T+E       N+L+ +   +E+L E  VEL    + M +L P    E    ++ 
Sbjct: 137 FYHIPKTKE-------NKLEAEKRELELLKEYGVELVVLARYMQILSPKFVKEYENKIIN 189

Query: 268 DHYSVLPLIPG 300
            H+S LP  PG
Sbjct: 190 IHHSFLPAFPG 200


>tr|A1ZNL6|A1ZNL6_9SPHI PKD domain protein OS=Microscilla marina ATCC
            23134 GN=M23134_02237 PE=4 SV=1
          Length = 8871

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 254  MDDSICKSGCSIDMLCKLPVSSTSTSARISIPSLSPSKRLAPNGSCTSSVSGTNAKSY 81
            +D +IC    +++   K P ++  T   IS P++SP    A   S T++VSG    SY
Sbjct: 1984 LDQTICPDNLNLNAT-KTPTAAVGTWTIISKPAISPDPTFADANSATTNVSGLQNGSY 2040


>tr|B4LQH2|B4LQH2_DROVI GJ13201 OS=Drosophila virilis GN=GJ13201 PE=4
            SV=1
          Length = 1399

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 215  MLCKLPVSSTSTSARISIPSLSPS-KRLAPNGSCTSSVSGTNAKS 84
            M+ K P S+T +SAR    S SP+ +RL P  S TS+  G N+ S
Sbjct: 1260 MMMKPPKSTTPSSARTRESSASPALERLTPTKSITSNAGGGNSNS 1304


>tr|Q21M75|Q21M75_SACD2 Putative pectin/pectate lyase
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=pel1C PE=4 SV=1
          Length = 769

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/76 (23%), Positives = 41/76 (53%)
 Frame = -2

Query: 311 VEDGPGIRGSTL*WSLIINMDDSICKSGCSIDMLCKLPVSSTSTSARISIPSLSPSKRLA 132
           +++  G  G+   W ++ N + ++ KSG +  ++   PVS+T  +  I+  +  P+  +A
Sbjct: 448 IKEAAGFEGNITGWQVVNNENGAVLKSGSNAGVISFSPVSTTKLNFEITSSNGMPT--VA 505

Query: 131 PNGSCTSSVSGTNAKS 84
              + + +V GT++ S
Sbjct: 506 EFETYSGTVGGTSSSS 521


>tr|A4IHD3|A4IHD3_XENTR LOC100124830 protein OS=Xenopus tropicalis
           GN=cdcp2 PE=2 SV=1
          Length = 536

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
 Frame = -2

Query: 323 RPCQVEDGPGIRGSTL*WSLIINMDDSICKSGCSIDMLCKLP--VSSTSTSARISIPS-- 156
           R C  E  P +  S     L+++ D      G  +  +  +P  VS T T   I IPS  
Sbjct: 334 RWCGREIPPSVMSSKNKLLLVLSTDRDTASKGFVVSYIGVVPINVSCTRTDFHIQIPSQS 393

Query: 155 ---LSPSKRLAPNGSCTSSVSGTNAKSY 81
              L  +       SC S +SGTN K Y
Sbjct: 394 LPQLERNHIYLGTPSCASQISGTNFKIY 421