BP916325 |
Clone id |
YMU001_000086_D08 |
Library |
YMU01 |
Length |
493 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000086_D08. |
Accession |
BP916325 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCCCCTTAACCCCACACAACATTAGCCTTAATCCCTAAAAATTAGGATTCCTTACAAGG CCCATGCAAGGTGCATATTTCTCCTAATGATCTCGACAAAAAGAATATTCTAACGGCGTG CATTTTTTATGAGTAACTTTTATCACGCACGATGGATTCTCCTCATTATGGGGGCCTTAC AAATGTGCATTTCTTTAAAACTAAAAGTTACATGGAGTGAATCAGGCTCCATACTTAACA CTCTCCCACTTTGAAAAATGGCTAACCCTTGAACTATAGCACCCAATATCATCCAAAAAA ACTATGATAAACTTACCCAAGTAAGGTCCATATACCCTATTCATTAAATCATGGAAAGTC ATGTAGACATTCACCAATCCAAAAGGCATCCTACGATAAGCAAAGCAACCCCATGTGGTG AGATGAAAGTAGTCTGCAATTGATCCTCAAGAGTAGTGCCGATCTGGAAGTATCCCAAGA AGCCATTCATAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31843 |
Definition |
sp|P31843|RRPO_OENBE RNA-directed DNA polymerase homolog OS=Oenothera bertiana |
Align length |
50 |
Score (bit) |
53.5 |
E-value |
5.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AQ03 |
Definition |
tr|A5AQ03|A5AQ03_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
48 |
Score (bit) |
47.0 |
E-value |
5.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916325|Adiantum capillus-veneris mRNA, clone: YMU001_000086_D08. (493 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5AQ03|A5AQ03_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-09 tr|A5CBC3|A5CBC3_VITVI Putative uncharacterized protein OS=Vitis... 49 5e-09 tr|A5CAU1|A5CAU1_VITVI Putative uncharacterized protein OS=Vitis... 63 6e-09 tr|Q27TU8|Q27TU8_OROCR Reverse transcriptase (Fragment) OS=Oroba... 63 8e-09 tr|A5ANW2|A5ANW2_VITVI Putative uncharacterized protein OS=Vitis... 48 1e-08 tr|A7QXB5|A7QXB5_VITVI Chromosome undetermined scaffold_219, who... 47 1e-08 tr|A5B4W9|A5B4W9_VITVI Putative uncharacterized protein OS=Vitis... 48 1e-08 tr|A5BG10|A5BG10_VITVI Putative uncharacterized protein (Fragmen... 48 1e-08 tr|A5BJ11|A5BJ11_VITVI Putative uncharacterized protein OS=Vitis... 48 1e-08 tr|A5BWA6|A5BWA6_VITVI Putative uncharacterized protein OS=Vitis... 48 1e-08 tr|A5C0L1|A5C0L1_VITVI Putative uncharacterized protein OS=Vitis... 45 1e-08 tr|A5AE38|A5AE38_VITVI Putative uncharacterized protein OS=Vitis... 47 1e-08 tr|A5B0V4|A5B0V4_VITVI Putative uncharacterized protein OS=Vitis... 46 1e-08 tr|A5AG68|A5AG68_VITVI Putative uncharacterized protein OS=Vitis... 48 1e-08 tr|Q56GG6|Q56GG6_CYCRE Reverse transcriptase (Fragment) OS=Cycas... 61 1e-08 tr|A5AEM1|A5AEM1_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5AKZ0|A5AKZ0_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5C050|A5C050_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5BH24|A5BH24_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5BRS7|A5BRS7_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5ADK2|A5ADK2_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5BAE8|A5BAE8_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5BLX8|A5BLX8_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5BCK1|A5BCK1_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5BXM1|A5BXM1_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5ATG4|A5ATG4_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5AJX5|A5AJX5_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A7R6B8|A7R6B8_VITVI Chromosome undetermined scaffold_1223, wh... 47 2e-08 tr|A5BUX2|A5BUX2_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08 tr|A5AIE4|A5AIE4_VITVI Putative uncharacterized protein OS=Vitis... 47 2e-08
>tr|A5AQ03|A5AQ03_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028988 PE=4 SV=1 Length = 1873
Score = 47.0 bits (110), Expect(2) = 5e-09 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSS 270 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y S Sbjct: 1138 FGTFAYRRMPFGLCNAPATFQRCMLSIFSDMVERIMEVFMDDITVYGS 1185
Score = 36.6 bits (83), Expect(2) = 5e-09 Identities = 16/27 (59%), Positives = 20/27 (74%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LEDQ +TTFI P G Sbjct: 1113 LDGYSGYFQIEIDLEDQEKTTFICPFG 1139
>tr|A5CBC3|A5CBC3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010466 PE=4 SV=1 Length = 265
Score = 48.9 bits (115), Expect(2) = 5e-09 Identities = 23/52 (44%), Positives = 30/52 (57%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSSRVSH 258 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y V H Sbjct: 122 FGTFAYRRMPFGLCNAPATFQRCMLSIFSDMVERIMEVFMDDITVYGKAVLH 173
Score = 34.7 bits (78), Expect(2) = 5e-09 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LEDQ +TTF P G Sbjct: 97 LDGYSGYFQIEIDLEDQEKTTFTCPFG 123
>tr|A5CAU1|A5CAU1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011412 PE=4 SV=1 Length = 736
Score = 63.2 bits (152), Expect = 6e-09 Identities = 28/69 (40%), Positives = 43/69 (62%) Frame = -3
Query: 446 GSIADYFHLTTWGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSSR 267 G ++ +H T +G + + MPFGL N TF LMN+++ PYL KF++++LDDI YS+ Sbjct: 223 GCVSTTWHSTRYGSYEFLVMPFGLTNAPTTFCTLMNKIFHPYLDKFVVLYLDDIVIYSNT 282
Query: 266 VSHFSKWES 240 + K S Sbjct: 283 LKEHVKTRS 291
>tr|Q27TU8|Q27TU8_OROCR Reverse transcriptase (Fragment) OS=Orobanche crenata PE=4 SV=1 Length = 143
Score = 62.8 bits (151), Expect = 8e-09 Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 8/80 (10%) Frame = -3
Query: 419 TTWGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYS-SRVSHFSKWE 243 T +G + + MPFGL N F DLMNRV+ PYL KF+IVF+DDI YS S+V H Sbjct: 62 TRYGHYEFIVMPFGLTNAPAVFMDLMNRVFQPYLDKFVIVFIDDILIYSKSKVEHEQHLR 121
Query: 242 SV-------KYGA*FTPCNF 204 +V K A F+ C F Sbjct: 122 TVLGILRKEKLYAKFSKCEF 141
>tr|A5ANW2|A5ANW2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019783 PE=4 SV=1 Length = 1453
Score = 47.8 bits (112), Expect(2) = 1e-08 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSS 270 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y S Sbjct: 1054 FGTFAYRRMPFGLCNAPTTFQRCMLSIFSDMVERIMEVFMDDISIYGS 1101
Score = 34.7 bits (78), Expect(2) = 1e-08 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LEDQ +TTF P G Sbjct: 1029 LDGYSGYFQIEIDLEDQEKTTFTCPFG 1055
>tr|A7QXB5|A7QXB5_VITVI Chromosome undetermined scaffold_219, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009068001 PE=4 SV=1 Length = 1166
Score = 47.0 bits (110), Expect(2) = 1e-08 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSS 270 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y S Sbjct: 1047 FGTFAYRRMPFGLCNAPTTFQRCMLSIFSDMVERIMEVFMDDITVYGS 1094
Score = 35.4 bits (80), Expect(2) = 1e-08 Identities = 15/27 (55%), Positives = 20/27 (74%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LED+ +TTFI P G Sbjct: 1022 LDGYSGYFQIEIDLEDEEKTTFICPFG 1048
>tr|A5B4W9|A5B4W9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041293 PE=4 SV=1 Length = 963
Score = 47.8 bits (112), Expect(2) = 1e-08 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSS 270 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y S Sbjct: 531 FGTFAYRRMPFGLCNAXATFQRCMLSIFSDMVERIMEVFMDDITVYGS 578
Score = 34.7 bits (78), Expect(2) = 1e-08 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LEDQ +TTF P G Sbjct: 506 LDGYSGYFQIEIDLEDQEKTTFTCPFG 532
>tr|A5BG10|A5BG10_VITVI Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_020401 PE=4 SV=1 Length = 812
Score = 47.8 bits (112), Expect(2) = 1e-08 Identities = 23/53 (43%), Positives = 30/53 (56%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSSRVSHF 255 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y S F Sbjct: 42 FGTFAYRRMPFGLCNSPATFQRCMLSIFSDMVERIMEVFMDDITVYGSSYEEF 94
Score = 34.7 bits (78), Expect(2) = 1e-08 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LEDQ +TTF P G Sbjct: 17 LDGYSGYFQIEIDLEDQEKTTFTCPFG 43
>tr|A5BJ11|A5BJ11_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043741 PE=4 SV=1 Length = 759
Score = 47.8 bits (112), Expect(2) = 1e-08 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSS 270 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y S Sbjct: 42 FGTFAYRRMPFGLCNAPTTFQRCMLSIFSDMVERIMEVFMDDISIYGS 89
Score = 34.7 bits (78), Expect(2) = 1e-08 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LEDQ +TTF P G Sbjct: 17 LDGYSGYFQIEIDLEDQEKTTFTCPFG 43
>tr|A5BWA6|A5BWA6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017830 PE=4 SV=1 Length = 275
Score = 47.8 bits (112), Expect(2) = 1e-08 Identities = 22/48 (45%), Positives = 29/48 (60%) Frame = -3
Query: 413 WGCFAYRRMPFGLVNVYMTFHDLMNRVYGPYLGKFIIVFLDDIGCYSS 270 +G FAYRRMPFGL N TF M ++ + + + VF+DDI Y S Sbjct: 122 FGTFAYRRMPFGLCNAXATFQRCMLSIFSDMVERIMEVFMDDITVYGS 169
Score = 34.7 bits (78), Expect(2) = 1e-08 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -1
Query: 490 MNGFLGYFQIGTTLEDQLQTTFISPHG 410 ++G+ GYFQI LEDQ +TTF P G Sbjct: 97 LDGYSGYFQIEIDLEDQEKTTFTCPFG 123
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