BP916329 |
Clone id |
YMU001_000086_D12 |
Library |
YMU01 |
Length |
523 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000086_D12. |
Accession |
BP916329 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CGCTTTTGTACATTGGCTTGTCTTCTTCGTCGTGTCCCTTGATATTTTCATACCAAGTAT CCTCTTTGCAGCACCTAAATCTTTCATTGAAAAAGATTTAGACAACTCCTCTTTTAGGTC TTTGATGTCCTGCATGTTAGCACTTGCAATCAACATGTCATCAACATACAACATTAGGAT GATGAATTTTCCATCTCCCAAATTCTTCGTGTAGACGCAGTGATCCGAGTTGCATCTTGT GAATCCATGATCCAACATCCATCGATGAAACTTCAAGTACCATTGTCTTGATGCTTGCTT TAAACCATACAAGCCCTTCTTTAATCTGCAAACCATTTTCTCCTTACCTTTTACTTCATA CCCCTTTGGTTGAAGCATGTAGGTTTCCTCCTCTAAGTCACCGTGAGGGAATGCCGTATT TACATCCATTTGCTCGAGATTTAGATCATGAGTAGCCACAAGGCTTAAGACAAGCCTAAT TGAGTTCATTTTTACAACAGGAGAAAATATTTCATTGAAGTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
161 |
Score (bit) |
191.0 |
E-value |
1.0e-48 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916329|Adiantum capillus-veneris mRNA, clone: YMU001_000086_D12. (506 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 191 1e-48 sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 116 5e-26 sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W O... 89 9e-18 sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=... 67 5e-11 sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=... 67 5e-11 sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=... 67 5e-11 sp|P0C2I3|YD15B_YEAST Transposon Ty1-DR6 Gag-Pol polyprotein OS=... 67 5e-11 sp|Q07793|YD13B_YEAST Transposon Ty1-DR4 Gag-Pol polyprotein OS=... 67 5e-11 sp|Q07163|TY1AB_YEAST Transposon TyH3 Gag-Pol polyprotein OS=Sac... 67 5e-11 sp|Q12490|YB11B_YEAST Transposon Ty1-BL Gag-Pol polyprotein OS=S... 67 6e-11 sp|P47024|YJ41B_YEAST Transposon Ty4-J Gag-Pol polyprotein OS=Sa... 66 8e-11 sp|P0C2J7|YH41B_YEAST Transposon Ty4-H Gag-Pol polyprotein OS=Sa... 66 8e-11 sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=... 66 1e-10 sp|Q12141|YG11B_YEAST Transposon Ty1-GR1 Gag-Pol polyprotein OS=... 66 1e-10 sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=... 65 2e-10 sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=... 65 2e-10 sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=... 64 4e-10 sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=S... 64 4e-10 sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=S... 64 4e-10 sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein OS=... 64 4e-10 sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=... 64 4e-10 sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=... 64 4e-10 sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=... 64 4e-10 sp|P0C2J3|YL21B_YEAST Transposon Ty2-LR1 Gag-Pol polyprotein OS=... 64 4e-10 sp|P0C2I5|YL12B_YEAST Transposon Ty1-LR2 Gag-Pol polyprotein OS=... 64 4e-10 sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Sa... 64 4e-10 sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=... 64 4e-10 sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=... 64 4e-10 sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=... 64 4e-10 sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=... 64 4e-10
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 Length = 1328
Score = 191 bits (486), Expect = 1e-48 Identities = 97/161 (60%), Positives = 117/161 (72%) Frame = -3
Query: 504 SPVVKMNSIRLVLSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCR 325 SPVVKM SIR +LSL A+ DL +EQ+DV TAF HGDLEEE YM QP+G+EV GK+ MVC+ Sbjct: 896 SPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCK 955
Query: 324 LKKGLYGLKQASRQWYLKFHRWMLDHGFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIA 145 L K LYGLKQA RQWY+KF +M + + SD CVY K + FIIL+LYVDDMLI Sbjct: 956 LNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIV 1015
Query: 144 SANMQDIKDLKEELSKSFSMKDLGAAKRILGMKISRDTTKK 22 + I LK +LSKSF MKDLG A++ILGMKI R+ T + Sbjct: 1016 GKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSR 1056
>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 Length = 1409
Score = 116 bits (291), Expect = 5e-26 Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 1/161 (0%) Frame = -3
Query: 504 SPVVKMNSIRLVLSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCR 325 +PV +++S R +LSLV ++L + QMDV TAF +G L+EE YM P+G + VC+ Sbjct: 976 APVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCK 1033
Query: 324 LKKGLYGLKQASRQWYLKFHRWMLDHGFTRCNSDHCVYTKNLGD-GKFIILMLYVDDMLI 148 L K +YGLKQA+R W+ F + + + F + D C+Y + G+ + I ++LYVDD++I Sbjct: 1034 LNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVI 1093
Query: 147 ASANMQDIKDLKEELSKSFSMKDLGAAKRILGMKISRDTTK 25 A+ +M + + K L + F M DL K +G++I K Sbjct: 1094 ATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDK 1134
>sp|P25600|YCH4_YEAST Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2 Length = 308
Score = 89.4 bits (220), Expect = 9e-18 Identities = 48/133 (36%), Positives = 77/133 (57%) Frame = -3
Query: 429 MDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQASRQWYLKFHRWMLD 250 MDV+TAF + ++E Y+ QP G+ + V L G+YGLKQA W + + Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 249 HGFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLKEELSKSFSMKDLGA 70 GF R +H +Y ++ DG I + +YVDD+L+A+ + + +K+EL+K +SMKDLG Sbjct: 61 IGFCRHEGEHGLYFRSTSDGP-IYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGK 119
Query: 69 AKRILGMKISRDT 31 + LG+ I + + Sbjct: 120 VDKFLGLNIHQSS 132
>sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-NL1 PE=3 SV=1 Length = 1755
Score = 67.0 bits (162), Expect = 5e-11 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Frame = -3
Query: 468 LSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQAS 289 LSL ++ + Q+D+++A+ + D++EE Y+ P + K + RLKK LYGLKQ+ Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSG 1388
Query: 288 RQWYLKFHRWMLDH-GFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLK 112 WY +++ G CV+ + + + L+VDDM++ S N+ K + Sbjct: 1389 ANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSNKRII 1443
Query: 111 EELSKSFSMK--DLGAAKR-----ILGMKI 43 E+L + K +LG + ILG++I Sbjct: 1444 EKLKMQYDTKIINLGESDEEIQYDILGLEI 1473
>sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-LR4 PE=3 SV=1 Length = 1755
Score = 67.0 bits (162), Expect = 5e-11 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Frame = -3
Query: 468 LSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQAS 289 LSL ++ + Q+D+++A+ + D++EE Y+ P + K + RLKK LYGLKQ+ Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSG 1388
Query: 288 RQWYLKFHRWMLDH-GFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLK 112 WY +++ G CV+ + + + L+VDDM++ S N+ K + Sbjct: 1389 ANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSNKRII 1443
Query: 111 EELSKSFSMK--DLGAAKR-----ILGMKI 43 E+L + K +LG + ILG++I Sbjct: 1444 EKLKMQYDTKIINLGESDEEIQYDILGLEI 1473
>sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-JR2 PE=1 SV=3 Length = 1755
Score = 67.0 bits (162), Expect = 5e-11 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Frame = -3
Query: 468 LSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQAS 289 LSL ++ + Q+D+++A+ + D++EE Y+ P + K + RLKK LYGLKQ+ Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSG 1388
Query: 288 RQWYLKFHRWMLDH-GFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLK 112 WY +++ G CV+ + + + L+VDDM++ S N+ K + Sbjct: 1389 ANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSNKRII 1443
Query: 111 EELSKSFSMK--DLGAAKR-----ILGMKI 43 E+L + K +LG + ILG++I Sbjct: 1444 EKLKMQYDTKIINLGESDEEIQYDILGLEI 1473
>sp|P0C2I3|YD15B_YEAST Transposon Ty1-DR6 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-DR6 PE=3 SV=1 Length = 1755
Score = 67.0 bits (162), Expect = 5e-11 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Frame = -3
Query: 468 LSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQAS 289 LSL ++ + Q+D+++A+ + D++EE Y+ P + K + RLKK LYGLKQ+ Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSG 1388
Query: 288 RQWYLKFHRWMLDH-GFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLK 112 WY +++ G CV+ + + + L+VDDM++ S N+ K + Sbjct: 1389 ANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSNKRII 1443
Query: 111 EELSKSFSMK--DLGAAKR-----ILGMKI 43 E+L + K +LG + ILG++I Sbjct: 1444 EKLKMQYDTKIINLGESDEEIQYDILGLEI 1473
>sp|Q07793|YD13B_YEAST Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-DR4 PE=3 SV=2 Length = 1604
Score = 67.0 bits (162), Expect = 5e-11 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Frame = -3
Query: 468 LSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQAS 289 LSL ++ + Q+D+++A+ + D++EE Y+ P + K + RLKK LYGLKQ+ Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSG 1388
Query: 288 RQWYLKFHRWMLDH-GFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLK 112 WY +++ G CV+ + + + L+VDDM++ S N+ K + Sbjct: 1389 ANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSNKRII 1443
Query: 111 EELSKSFSMK--DLGAAKR-----ILGMKI 43 E+L + K +LG + ILG++I Sbjct: 1444 EKLKMQYDTKIINLGESDEEIQYDILGLEI 1473
>sp|Q07163|TY1AB_YEAST Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B PE=1 SV=2 Length = 1755
Score = 67.0 bits (162), Expect = 5e-11 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Frame = -3
Query: 468 LSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQAS 289 LSL ++ + Q+D+++A+ + D++EE Y+ P + K + RLKK LYGLKQ+ Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSG 1388
Query: 288 RQWYLKFHRWMLDH-GFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLK 112 WY +++ G CV+ + + + L+VDDM++ S N+ K + Sbjct: 1389 ANWYETIKSYLIQQCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSNKRII 1443
Query: 111 EELSKSFSMK--DLGAAKR-----ILGMKI 43 E+L + K +LG + ILG++I Sbjct: 1444 EKLKMQYDTKIINLGESDEEIQYDILGLEI 1473
>sp|Q12490|YB11B_YEAST Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-BL PE=1 SV=1 Length = 1755
Score = 66.6 bits (161), Expect = 6e-11 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 8/150 (5%) Frame = -3
Query: 468 LSLVATHDLNLEQMDVNTAFPHGDLEEETYMLQPKGYEVKGKEKMVCRLKKGLYGLKQAS 289 LSL ++ ++ Q+D+++A+ + D++EE Y+ P + K + RLKK LYGLKQ+ Sbjct: 1332 LSLALDNNYHITQLDISSAYLYADIKEELYIRPPPHLGMNDK---LIRLKKSLYGLKQSG 1388
Query: 288 RQWYLKFHRWMLDH-GFTRCNSDHCVYTKNLGDGKFIILMLYVDDMLIASANMQDIKDLK 112 WY +++ G CV+ + + + L+VDDM++ S N+ K + Sbjct: 1389 ANWYETIKSYLIKQCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSNKRII 1443
Query: 111 EELSKSFSMK--DLGAAKR-----ILGMKI 43 ++L + K +LG + ILG++I Sbjct: 1444 DKLKMQYDTKIINLGESDEEIQYDILGLEI 1473
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5MG99 |
Definition |
tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea batatas |
Align length |
161 |
Score (bit) |
207.0 |
E-value |
3.0e-52 |
Report |
|