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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916339
Clone id YMU001_000086_E11
Library
Length 238
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGGTGATCTGAAGCTTCTCGACGCCCTGACTGGCATTGGTGTGGAGGGTATTGAAGCTG
CGTGCTCGGGCTGTTGTAGTACTGCGCTGCCGCTTCAGCTGCCACTTGGCCTTCCGCGAT
ATTGAGCTAGCAGAGTCTCTCGAACCTCCTCTTTAGGGCTTCCTGAGCAGCTGGCCTAAT
TCAAATATTAACAAGTTCCATGCACATCATTCAAAGTCCATTCAATGGCTCCATCTTG
■■Homology search results ■■ -
sp_hit_id O04016
Definition sp|O04016|P5CR_ACTCH Pyrroline-5-carboxylate reductase OS=Actinidia chinensis
Align length 43
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916339|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_E11.
         (238 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O04016|P5CR_ACTCH Pyrroline-5-carboxylate reductase OS=Actini...    29   6.4  

>sp|O04016|P5CR_ACTCH Pyrroline-5-carboxylate reductase OS=Actinidia
           chinensis PE=2 SV=1
          Length = 278

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = +3

Query: 6   DLKLLDALTGIGVEG-------IEAACSGCCSTALPLQLPLGL 113
           D KL DA+TG+   G       IEA   G  +  LP +L LGL
Sbjct: 170 DEKLFDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRELALGL 212
tr_hit_id B1Q2N4
Definition tr|B1Q2N4|B1Q2N4_9SPHN Ferredoxin OS=Sphingomonas sp. AO1
Align length 24
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916339|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_E11.
         (238 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1Q2N4|B1Q2N4_9SPHN Ferredoxin OS=Sphingomonas sp. AO1 GN=bis...    33   5.4  

>tr|B1Q2N4|B1Q2N4_9SPHN Ferredoxin OS=Sphingomonas sp. AO1
          GN=bisdA PE=4 SV=1
          Length = 105

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 15 LLDALTGIGVEGIEAACSGCCSTA 86
          L++AL    ++G+EA C GCCS A
Sbjct: 24 LMEALRDANIDGVEAMCGGCCSCA 47