BP916340
Clone id YMU001_000086_E12
Library
Length 232
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGTGAGCCTGTACGTGGGTCGCGCATGTCCACGCAGAGTAGTTGCATACCCTCTGATTGC
ACAACCCATGATCACTAGCATTCCATTCAGTACCTAGTATGAGCATTTTCCAGTACATGA
ACCACCTTATTTCACTTATTAGTGACTTTCTTGTAGTCCAAAGTCGTGGAGGTTGTGGGA
GCACTGCTCAACTTAGATATCTGCACCTATATAAGGAGCCAATTGGCCGCTT
■■Homology search results ■■ -
sp_hit_id Q8WJ26
Definition sp|Q8WJ26|MATK_MEMEL Maturase K OS=Memecylon elaeagni
Align length 48
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916340|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_E12.
(232 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8WJ26|MATK_MEMEL Maturase K OS=Memecylon elaeagni GN=matK PE... 30 3.8
sp|Q9UUF7|COPB_SCHPO Coatomer subunit beta OS=Schizosaccharomyce... 29 6.5

>sp|Q8WJ26|MATK_MEMEL Maturase K OS=Memecylon elaeagni GN=matK PE=3
SV=1
Length = 510

Score = 30.0 bits (66), Expect = 3.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -1

Query: 226 PIGSLYRCRYLS*AVLPQPPRLWTTRKSLISEIRWFMY----WKMLIL 95
P+ ++ ++ +L Q R W S + +RWF+Y WK LIL
Sbjct: 149 PVSNVLIPYHIHLEILAQTLRYWVKEASSLHLLRWFLYEYCNWKSLIL 196


>sp|Q9UUF7|COPB_SCHPO Coatomer subunit beta OS=Schizosaccharomyces
pombe GN=sec26 PE=2 SV=1
Length = 940

Score = 29.3 bits (64), Expect = 6.5
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +3

Query: 102 SIFQYMNHLI----SLISDFLVVQSRGGCGSTA 188
SI+Q NHLI SL DFL +S G C A
Sbjct: 155 SIYQVSNHLIPDAASLAEDFLAAESEGTCKRNA 187


tr_hit_id O61779
Definition tr|O61779|O61779_CAEEL Putative uncharacterized protein OS=Caenorhabditis elegans
Align length 40
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916340|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_E12.
(232 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|O61779|O61779_CAEEL Putative uncharacterized protein OS=Caeno... 33 5.4
tr|B3RVA8|B3RVA8_TRIAD Putative uncharacterized protein (Fragmen... 33 5.4

>tr|O61779|O61779_CAEEL Putative uncharacterized protein
OS=Caenorhabditis elegans GN=K10E9.1 PE=2 SV=1
Length = 1451

Score = 33.5 bits (75), Expect = 5.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1

Query: 178 PQPPRLWTTRKSLISEIRWFMYWKMLILGTEWNASDHGLC 59
PQPP + T KS + +R+ +Y KM+ + ++ C
Sbjct: 899 PQPPHISTNEKSFLQHLRFHLYLKMMNISKSMTQGEYATC 938


>tr|B3RVA8|B3RVA8_TRIAD Putative uncharacterized protein (Fragment)
OS=Trichoplax adhaerens GN=TRIADDRAFT_24419 PE=4 SV=1
Length = 668

Score = 33.5 bits (75), Expect = 5.4
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3

Query: 99 MSIFQYMNHLISLISDF--LVVQSRGGCGSTAQL-RYLH 206
+ +FQY NH++ ++ + LVV GCG + Q+ +YLH
Sbjct: 30 LPVFQYRNHILYMLEKYSTLVVVGETGCGKSTQIPQYLH 68