BP916342 |
Clone id |
YMU001_000086_F02 |
Library |
YMU01 |
Length |
545 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000086_F02. |
Accession |
BP916342 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTATGGCTGATCCCTTCTCGGGGGTCCTAAATGTGTGGTAGGCATAGGGCGCTCGGTGGC AGCGAGCAGGTGGGTCGAGGAACGGGCAAGGCTCCCCGCTGGTCTCTTCGTCAAGATTGT CCAAGCCGTGCAATGGTCTCTGTTGTTCGGATTTGCTCATCGTGGCGGCTCCTTGGCGGC CGGTGATGGAGTCCTTGGACTCCCCACGTGTGCGATTTGCTTCCCGGTATGTTGCTGTCT TGTTCTCTTTTGTCTCCTTGGGATCTGTTTGGGAAGGTTATACCCTATGGCACGGGGTTG TCCTCGTGTGGCAACCAAGCAGGTTCTTGGCGTTGGTTTTTTTCCTCGAGGGTGGCTCTG TAATCACCATGGGTCGTGGTATGTGGTTTTTAGTTTGTGAATGGAATTGTAGATGATCGA TGTAGTGGGTTAGGACTCCTTGTAAAAGCCCCGAACTCTTCGCTTGATCTGGTGATGATG TAGAGGCTTGTCTGATGTAAATCTTTGGACTTCATGATGGCTCAGTTTGAGCATGGTATG TATGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P61376 |
Definition |
sp|P61376|LHX5_RAT LIM/homeobox protein Lhx5 OS=Rattus norvegicus |
Align length |
73 |
Score (bit) |
35.8 |
E-value |
0.14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B5GB32 |
Definition |
tr|B5GB32|B5GB32_9ACTO Oligopeptide/dipeptide ABC transporter OS=Streptomyces sp. SPB74 |
Align length |
123 |
Score (bit) |
40.8 |
E-value |
0.047 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916342|Adiantum capillus-veneris mRNA, clone: YMU001_000086_F02. (545 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B5GB32|B5GB32_9ACTO Oligopeptide/dipeptide ABC transporter OS... 41 0.047 tr|B5GTH3|B5GTH3_STRCL Two component transcriptional regulator O... 40 0.11 tr|A4H7K2|A4H7K2_LEIBR Putative uncharacterized protein OS=Leish... 39 0.23 tr|Q4S261|Q4S261_TETNG Chromosome undetermined SCAF14764, whole ... 38 0.40 tr|Q5W6S1|Q5W6S1_ORYSJ Putative uncharacterized protein B1036C05... 37 0.52 tr|A7CGB8|A7CGB8_BURPI Putative uncharacterized protein OS=Ralst... 37 0.89 tr|Q4DVZ2|Q4DVZ2_TRYCR Mucin-like glycoprotein, putative OS=Tryp... 37 0.89 tr|B4KWK2|B4KWK2_DROMO GI11416 OS=Drosophila mojavensis GN=GI114... 36 1.2 tr|B3NFR7|B3NFR7_DROER GG14314 OS=Drosophila erecta GN=GG14314 P... 36 1.2 tr|Q543P4|Q543P4_MOUSE Putative uncharacterized protein OS=Mus m... 36 1.5 tr|A8LE29|A8LE29_FRASN Putative uncharacterized protein OS=Frank... 36 1.5 tr|A6QQY6|A6QQY6_BOVIN LHX5 protein OS=Bos taurus GN=LHX5 PE=2 SV=1 36 1.5 tr|B0D7F5|B0D7F5_LACBS Predicted protein OS=Laccaria bicolor (st... 36 1.5 tr|Q9VU83|Q9VU83_DROME Starvin, isoform B OS=Drosophila melanoga... 35 2.0 tr|Q9VU82|Q9VU82_DROME Starvin, isoform C OS=Drosophila melanoga... 35 2.0 tr|Q9VU81|Q9VU81_DROME Starvin, isoform A OS=Drosophila melanoga... 35 2.0 tr|A8JNS4|A8JNS4_DROME Starvin, isoform E OS=Drosophila melanoga... 35 2.0 tr|Q2M1E1|Q2M1E1_DROPS GA20289 OS=Drosophila pseudoobscura pseud... 35 2.6 tr|A7UTG9|A7UTG9_ANOGA AGAP008696-PA (Fragment) OS=Anopheles gam... 35 2.6 tr|Q2U3W3|Q2U3W3_ASPOR Auxilin-like protein and related proteins... 35 2.6 tr|B8PI74|B8PI74_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6 tr|B8P668|B8P668_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.6 tr|A8JC92|A8JC92_CHLRE Cohesin complex subunit OS=Chlamydomonas ... 35 3.4 tr|Q2M0N9|Q2M0N9_DROPS GA10941 OS=Drosophila pseudoobscura pseud... 35 3.4 tr|B6MK72|B6MK72_BRAFL Putative uncharacterized protein OS=Branc... 35 3.4 tr|B4GRD2|B4GRD2_DROPE GL25186 OS=Drosophila persimilis GN=GL251... 35 3.4 tr|B3L343|B3L343_PLAKH Putative uncharacterized protein OS=Plasm... 35 3.4 tr|A2FDM2|A2FDM2_TRIVA Putative uncharacterized protein OS=Trich... 35 3.4 tr|B6DZL2|B6DZL2_ECHTE LIM homeobox 5 (Fragment) OS=Echinops tel... 34 4.4 tr|B0VZQ3|B0VZQ3_CULQU Putative uncharacterized protein OS=Culex... 34 4.4
>tr|B5GB32|B5GB32_9ACTO Oligopeptide/dipeptide ABC transporter OS=Streptomyces sp. SPB74 GN=SSBG_01490 PE=4 SV=1 Length = 474
Score = 40.8 bits (94), Expect = 0.047 Identities = 35/123 (28%), Positives = 42/123 (34%), Gaps = 6/123 (4%) Frame = -3
Query: 354 HPRGKKPTPRT-CLVATRGQPRAIGYNLPKQIPRRQKRTRQQHTGKQIAHVGSPRTPSPA 178 HPR + P P R P P++ P R R R H ++ PR P A Sbjct: 80 HPRPRAPLPPVPARTLRRPAPARHDRRRPRRPPPRPHRRRTHHRPRRHRAAPDPRPPHGA 139
Query: 177 AKEP-----PR*ANPNNRDHCTAWTILTKRPAGSLARSSTHLLAATERPMPTTHLGPPRR 13 A+ P P A P R +R A A P P H PPRR Sbjct: 140 ARAPRHGRRPHHARPRRRRRDRG---PRRRHAPRRGGRERRCRAGLRPPRPPLHPRPPRR 196
Query: 12 DQP 4 D P Sbjct: 197 DTP 199
>tr|B5GTH3|B5GTH3_STRCL Two component transcriptional regulator OS=Streptomyces clavuligerus ATCC 27064 GN=SSCG_02595 PE=4 SV=1 Length = 723
Score = 39.7 bits (91), Expect = 0.11 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Frame = -3
Query: 351 PRGKKPTPRTCLVATRGQPRAIGYNLPKQIPRRQKRTRQQHTGKQIAHV---GSP--RTP 187 PRG+ P PR + RG+PR G L +Q R KR ++Q G ++A + G+P RTP Sbjct: 429 PRGRDPVPRGAGESRRGEPRGDGTGLRQQ--RHGKRRQRQQRGGEMASMTPTGTPADRTP 486
Query: 186 SPAAKE 169 + A E Sbjct: 487 ADRAHE 492
>tr|A4H7K2|A4H7K2_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis GN=LbrM14_V2.0430 PE=4 SV=1 Length = 843
Score = 38.5 bits (88), Expect = 0.23 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 4/117 (3%) Frame = -3
Query: 360 QSHPRGKKPTPRTCLVATRGQPRAIGYNLPKQIPRRQKRTRQQH----TGKQIAHVGSPR 193 ++ P + TP C+ A+ G P ++ Q+R QQ T + + + P Sbjct: 393 EAPPPPPQSTPGPCITASTGVPAGAWPAWVAELENAQQRQHQQQQQSTTTEAVPSLTPPS 452
Query: 192 TPSPAAKEPPR*ANPNNRDHCTAWTILTKRPAGSLARSSTHLLAATERPMPTTHLGP 22 TP PA PP RD+ T T + S ++SS+ A+T P P Sbjct: 453 TPPPAPLLPPPPQQQQQRDYTTGVTAPSPVSPPSHSQSSSTQPASTSPAAPLIQAMP 509
>tr|Q4S261|Q4S261_TETNG Chromosome undetermined SCAF14764, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00025240001 PE=3 SV=1 Length = 579
Score = 37.7 bits (86), Expect = 0.40 Identities = 23/71 (32%), Positives = 37/71 (52%) Frame = -2
Query: 343 KKTNAKNLLGCHTRTTPCHRV*PSQTDPKETKENKTATYREANRTRGESKDSITGRQGAA 164 K+ N ++ C R+ P+Q D KET +N T++ +E N E ++S T R+G Sbjct: 285 KEANLNSVSSCTDRSLSPDLQDPTQDDIKET-DNSTSSDKETNNIENEEQNSGTKRRGPR 343
Query: 163 TMSKSEQQRPL 131 T K++Q L Sbjct: 344 TTIKAKQLETL 354
>tr|Q5W6S1|Q5W6S1_ORYSJ Putative uncharacterized protein B1036C05.10 OS=Oryza sativa subsp. japonica GN=B1036C05.10 PE=4 SV=1 Length = 300
Score = 37.4 bits (85), Expect = 0.52 Identities = 24/78 (30%), Positives = 32/78 (41%) Frame = -3
Query: 273 PKQIPRRQKRTRQQHTGKQIAHVGSPRTPSPAAKEPPR*ANPNNRDHCTAWTILTKRPAG 94 P+++P R R Q G++ H G PR + PPR P R H + P Sbjct: 35 PRRLPVRPARRPQHGVGRRAHHGGRPRRRPGPLRPPPRRLRPLPRRH--------RPPGE 86
Query: 93 SLARSSTHLLAATERPMP 40 R+ H AA RP P Sbjct: 87 GGPRARRHRRAARRRPPP 104
>tr|A7CGB8|A7CGB8_BURPI Putative uncharacterized protein OS=Ralstonia pickettii 12D GN=Rpic12DDRAFT_2475 PE=4 SV=1 Length = 258
Score = 36.6 bits (83), Expect = 0.89 Identities = 20/52 (38%), Positives = 22/52 (42%) Frame = -3
Query: 225 GKQIAHVGSPRTPSPAAKEPPR*ANPNNRDHCTAWTILTKRPAGSLARSSTH 70 GK+ A V P T P A P R NP N D W PA + R S H Sbjct: 166 GKETAEVREPPTQPPEAAVPTRMRNPMNDDGVQTWVASQHFPAAARGRVSLH 217
>tr|Q4DVZ2|Q4DVZ2_TRYCR Mucin-like glycoprotein, putative OS=Trypanosoma cruzi GN=Tc00.1047053506289.94 PE=4 SV=1 Length = 333
Score = 36.6 bits (83), Expect = 0.89 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = -2
Query: 274 SQTDPKETKENKTATYREANRTRGESKDSITGRQGAATMSKSEQQRPLHGLDNLDEETSG 95 S+T+PK+T +N+ + E D ++G A +S +E++ H D++DE+TS Sbjct: 234 SETNPKDTDDNEKHSVEE---------DGVSGEGKEAFVSPAEEENSEHDADDVDEKTSV 284
Query: 94 EPCPFLDPPARCHRA 50 +D H A Sbjct: 285 HDADDVDERTSVHDA 299
>tr|B4KWK2|B4KWK2_DROMO GI11416 OS=Drosophila mojavensis GN=GI11416 PE=4 SV=1 Length = 469
Score = 36.2 bits (82), Expect = 1.2 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Frame = -3
Query: 360 QSHPRGKKPTPRTCLVATRGQPRAIGYNLPKQIPRRQKRTRQQHTGKQIAHVGSPRTPSP 181 Q P+ ++ +P+ + Q GY P+Q PR+Q+ + QQ Q++H GS S Sbjct: 164 QQQPQLQRSSPQQIQQQQQQQQHQQGY--PQQSPRQQQSSPQQQP-PQLSHRGS----SS 216
Query: 180 AAKEPPR*ANP--NNRDHCTAWTILTKRPAGSLARSSTHLLAATERPMPTTHLGPP 19 KEPP+ A+P NN D T A +++ ++ L + P PT P Sbjct: 217 PLKEPPQLASPLANNSDG-------TNNGANNVSDLYSNQLQNSMPPTPTKEPAHP 265
>tr|B3NFR7|B3NFR7_DROER GG14314 OS=Drosophila erecta GN=GG14314 PE=4 SV=1 Length = 1985
Score = 36.2 bits (82), Expect = 1.2 Identities = 30/93 (32%), Positives = 48/93 (51%) Frame = -3
Query: 354 HPRGKKPTPRTCLVATRGQPRAIGYNLPKQIPRRQKRTRQQHTGKQIAHVGSPRTPSPAA 175 HP P ++ +G P+ G+ LP +Q++ +QQ TG G+ RTPSP A Sbjct: 1096 HPHAPMP------LSLQGHPQH-GHGLPPSHTSQQQQQQQQQTG---GPAGTVRTPSP-A 1144
Query: 174 KEPPR*ANPNNRDHCTAWTILTKRPAGSLARSS 76 ++PPR + D +A T +P+ ++A SS Sbjct: 1145 QQPPR----SLHDPQSAREPPTSQPSTTMAGSS 1173
>tr|Q543P4|Q543P4_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Lhx5 PE=2 SV=1 Length = 402
Score = 35.8 bits (81), Expect = 1.5 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -2
Query: 349 SRKKTNAKNLLGCHTRTTPCHRV*PSQTDPKETKENKTATYREANRTRGESKDSITGRQG 170 S K+ + ++ C R+ P Q DPKET +N T++ +E E ++S T R+G Sbjct: 124 SLKEGSLNSVSSCTDRSLSPDLQDPLQDDPKET-DNSTSSDKETANNENEEQNSGTKRRG 182
Query: 169 AATMSKSEQQRPL 131 T K++Q L Sbjct: 183 PRTTIKAKQLETL 195
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