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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916343
Clone id YMU001_000086_F03
Library
Length 476
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGACTAGTCTGTATGAAAATAATTACAACCATAACACTTTTACGACATCTCAGTATAGC
AATAATAGAGAGCATAAACTTCAAATGTAACTTTACGTCGTTTCCCTTATGTCTCCCTAC
AATGCTCAACATCATGAACCTCTGTCGACATAGCTAGCTCTCCCTGTTGGGGGGTAGGGG
GCTAGATATGTTTTGCCTGCATTAGCTCATGGTGTTGTCAATCTGCAATGTGGGAATCAT
AGTGGGAAAATACTTCGGGGCCGGCGGCCCCCTGCCACCCCGTTGCAGCTCCAGCTCGCC
TGCAGAAACTTATGATGTTGTTGCAATACTCAATATTGGAACCATAGAAACCGCTGATAT
TTCGTGTAGTTGTCGCCTCTTGCAAGGCGATTCAAACCACCTTATTTCCCCGACATAGGT
GGCTACCTTAAAGACTTCACTAAAATGAGCTACTGCTTAAATTTATGTGACCAACA
■■Homology search results ■■ -
sp_hit_id Q5I6B8
Definition sp|Q5I6B8|PI51C_RAT Phosphatidylinositol-4-phosphate 5-kinase type-1 gamma OS=Rattus norvegicus
Align length 40
Score (bit) 30.4
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916343|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_F03.
         (476 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5I6B8|PI51C_RAT Phosphatidylinositol-4-phosphate 5-kinase ty...    30   4.2  
sp|Q8Y0H3|UVRC_RALSO UvrABC system protein C OS=Ralstonia solana...    30   5.5  
sp|Q76NV1|DYRK1_DICDI Probable serine/threonine-protein kinase d...    30   5.5  
sp|Q84Z01|CSLCA_ORYSJ Putative xyloglucan glycosyltransferase 10...    30   5.5  
sp|A2YHR9|CSLCA_ORYSI Putative xyloglucan glycosyltransferase 10...    30   5.5  
sp|Q7PC69|CSLC3_ORYSJ Probable xyloglucan glycosyltransferase 3 ...    30   5.5  
sp|P36079|YKI3_YEAST Putative uncharacterized protein YKL083W OS...    30   7.2  
sp|Q9ZQB9|CSLCC_ARATH Probable xyloglucan glycosyltransferase 12...    30   7.2  
sp|Q9SJA2|CSLC8_ARATH Probable xyloglucan glycosyltransferase 8 ...    30   7.2  
sp|Q6L538|CSLC7_ORYSJ Probable xyloglucan glycosyltransferase 7 ...    30   7.2  
sp|Q8LIY0|CSLC1_ORYSJ Probable xyloglucan glycosyltransferase 1 ...    30   7.2  

>sp|Q5I6B8|PI51C_RAT Phosphatidylinositol-4-phosphate 5-kinase
           type-1 gamma OS=Rattus norvegicus GN=Pip5k1c PE=1 SV=1
          Length = 688

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 206 LMVLSICNVGIIVGKYFGAGGPLPPRCSSSSPAETYDVVA 325
           + V  +C VG++V K  GAG  +PP  S +S A T +V A
Sbjct: 575 VQVEPVCGVGVVVPKEQGAGVEVPP--SGASAAATVEVDA 612


>sp|Q8Y0H3|UVRC_RALSO UvrABC system protein C OS=Ralstonia
           solanacearum GN=uvrC PE=3 SV=1
          Length = 654

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -3

Query: 438 EVFKVATYVGEIRWFESPCKRRQLHEISAVSMVPILSIATTS*VSAGELELQRGGRGPPA 259
           E  + AT   +I    +   R+ + E+   S + IL++A     +   L + RGGR    
Sbjct: 237 EFEQAATVRDQIGALSTVLTRQSVEEVGQASDIDILAVAIKGGHACVNLAMVRGGRHLGD 296

Query: 258 PKYFPTMI 235
             YFPT +
Sbjct: 297 KAYFPTHV 304


>sp|Q76NV1|DYRK1_DICDI Probable serine/threonine-protein kinase
           dyrk1 OS=Dictyostelium discoideum GN=dyrk1 PE=3 SV=1
          Length = 836

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 19  NNYNHNTFTTSQYSNNREHK 78
           NNYN+NT TTS  +NN  +K
Sbjct: 258 NNYNNNTTTTSSSNNNNNNK 277


>sp|Q84Z01|CSLCA_ORYSJ Putative xyloglucan glycosyltransferase 10
           OS=Oryza sativa subsp. japonica GN=CSLC10 PE=3 SV=1
          Length = 686

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 264 PAPKYFPTMIPTLQIDNTMS 205
           PAPK FP +IP L  +NTMS
Sbjct: 542 PAPKSFPFIIPYLLFENTMS 561


>sp|A2YHR9|CSLCA_ORYSI Putative xyloglucan glycosyltransferase 10
           OS=Oryza sativa subsp. indica GN=CSLC10 PE=3 SV=1
          Length = 686

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 264 PAPKYFPTMIPTLQIDNTMS 205
           PAPK FP +IP L  +NTMS
Sbjct: 542 PAPKSFPFIIPYLLFENTMS 561


>sp|Q7PC69|CSLC3_ORYSJ Probable xyloglucan glycosyltransferase 3
           OS=Oryza sativa subsp. japonica GN=CSLC3 PE=2 SV=1
          Length = 745

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 264 PAPKYFPTMIPTLQIDNTMS 205
           PAPK FP +IP L  +NTMS
Sbjct: 575 PAPKSFPFVIPYLLFENTMS 594


>sp|P36079|YKI3_YEAST Putative uncharacterized protein YKL083W
           OS=Saccharomyces cerevisiae GN=YKL083W PE=5 SV=1
          Length = 204

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +2

Query: 65  IESINFKCNFTSF---PLCLPTMLNI 133
           + S NFKC+FTSF   P  LP  LN+
Sbjct: 164 LASNNFKCDFTSFLAGPFVLPAFLNL 189


>sp|Q9ZQB9|CSLCC_ARATH Probable xyloglucan glycosyltransferase 12
           OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1
          Length = 699

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 264 PAPKYFPTMIPTLQIDNTMS 205
           PAPK FP ++P L  +NTMS
Sbjct: 555 PAPKSFPFIVPYLLFENTMS 574


>sp|Q9SJA2|CSLC8_ARATH Probable xyloglucan glycosyltransferase 8
           OS=Arabidopsis thaliana GN=CSLC8 PE=2 SV=1
          Length = 690

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 264 PAPKYFPTMIPTLQIDNTMS 205
           PAPK FP ++P L  +NTMS
Sbjct: 541 PAPKSFPFIVPYLLFENTMS 560


>sp|Q6L538|CSLC7_ORYSJ Probable xyloglucan glycosyltransferase 7
           OS=Oryza sativa subsp. japonica GN=CSLC7 PE=2 SV=1
          Length = 688

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 264 PAPKYFPTMIPTLQIDNTMS 205
           PAPK FP ++P L  +NTMS
Sbjct: 544 PAPKSFPFIVPYLLFENTMS 563
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916343|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_F03.
         (476 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******