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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916350
Clone id YMU001_000086_F11
Library
Length 437
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCAAAACTAACAATTGTGAGTGAATTATATTGAGCAATCCAAAAAAATTAAAGGTCATG
CTCTTGTTGAGCCATGACATCATCCAAAGACTATAATGACATCAGGGCAGCCACCCCCAC
CAACCCGTCGCCTCTTCCTCGATACACATGGTCCAAAAAATTGCCCAAAATTGCATCATC
TTAACACATTGCCATTTTTTAAGGCACTGCATGGTTTGTTAAGGCACTGCACGGTTGAGA
ATGTGTTTCCAAGAGTCATTTATTTTGGCAAAGATTGAGGAGAGTTTGCCTATCCACAAC
ACTACGATGGATTTCTTGATCAACTAATGGTAGTCTTCAGATTGACCTTTGTGGCATCAG
AGCTTAATGACACTTTTGAGGTGGTCAAAAGTTGGAACAATCCCATGGGTACTAGTAAGC
TCAAAGAAACTTCACAC
■■Homology search results ■■ -
sp_hit_id Q7T346
Definition sp|Q7T346|DDT4_DANRE DNA-damage-inducible transcript 4 protein OS=Danio rerio
Align length 36
Score (bit) 30.8
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916350|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_F11.
         (437 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7T346|DDT4_DANRE DNA-damage-inducible transcript 4 protein O...    31   2.6  
sp|Q51699|NIRI_PARDP Protein nirI OS=Paracoccus denitrificans (s...    30   3.4  
sp|Q58930|Y1535_METJA Uncharacterized protein MJ1535 OS=Methanoc...    30   5.7  
sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 O...    30   5.7  
sp|Q3UFK8|FRMD8_MOUSE FERM domain-containing protein 8 OS=Mus mu...    30   5.7  
sp|Q01664|TFAP4_HUMAN Transcription factor AP-4 OS=Homo sapiens ...    29   7.5  
sp|P97367|MEIS2_MOUSE Homeobox protein Meis2 OS=Mus musculus GN=...    29   7.5  
sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 OS=Homo sapiens GN=...    29   7.5  
sp|Q9TKS6|MATK_SOYBN Maturase K OS=Glycine max GN=matK PE=3 SV=2       29   7.5  
sp|Q91VB3|PRM2_RATTU Protamine-2 OS=Rattus tunneyi GN=Prm2 PE=2 ...    29   9.8  
sp|Q91VE1|PRM2_RATFU Protamine-2 OS=Rattus fuscipes GN=Prm2 PE=2...    29   9.8  
sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus trop...    29   9.8  

>sp|Q7T346|DDT4_DANRE DNA-damage-inducible transcript 4 protein
           OS=Danio rerio GN=ddit4 PE=2 SV=1
          Length = 220

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 74  MTSSKDYNDIRAATPTNPSPLPRYTWSKKLPKIASS 181
           + SS    D   +TPT+ +P  R +WSK + K+ SS
Sbjct: 5   LISSLSSEDSSPSTPTSDAPAKRLSWSKLMQKLHSS 40


>sp|Q51699|NIRI_PARDP Protein nirI OS=Paracoccus denitrificans
           (strain Pd 1222) GN=nirI PE=4 SV=2
          Length = 681

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 131 PLPRYTWSKKLPKIASS*HIAIF*GTAWFVKAL--HG*ECVSKSHLFWQRLRRVCLSTTL 304
           PL +  W KK+P IA             FV AL   G E + +  + W+R+R   L+TTL
Sbjct: 384 PLWQEFWLKKIPGIAVV-------AAMLFVLALILFGQEALVRRPMLWRRVRLGFLATTL 436

Query: 305 RWIS*STNGSLQI 343
             +    NG L +
Sbjct: 437 VVLGWGLNGQLSV 449


>sp|Q58930|Y1535_METJA Uncharacterized protein MJ1535
           OS=Methanocaldococcus jannaschii GN=MJ1535 PE=4 SV=1
          Length = 299

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 282 EFAYPQHYDGFLDQLMVVFRLTFVASELN-DTFE 380
           E+ Y + Y+   D++  VFR+ FVA  LN DT+E
Sbjct: 198 EYGYYKIYNNQTDRIEKVFRVDFVAKNLNPDTYE 231


>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2
           OS=Mus musculus GN=Mospd2 PE=1 SV=2
          Length = 518

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 300 HYDGFLDQLMVVFRLTFVASELNDTFEVVKSWNNPMGTSKLKETS 434
           +Y  +L ++ V+F + ++   +N  F++VKSW  P   S LK TS
Sbjct: 174 YYPKYLSKI-VIFDMPWI---MNAAFKIVKSWLGPEAVSLLKFTS 214


>sp|Q3UFK8|FRMD8_MOUSE FERM domain-containing protein 8 OS=Mus
           musculus GN=Frmd8 PE=2 SV=2
          Length = 466

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 PPPTRRLFLDTHGPKNCPKLHHLNTLPFFKALHGLLR 224
           PPPT+R  L   G   C ++ HL+T+ + +   G+ R
Sbjct: 396 PPPTQRPKLRRQGSVVCSRIQHLSTIDYVEDGKGIKR 432


>sp|Q01664|TFAP4_HUMAN Transcription factor AP-4 OS=Homo sapiens
           GN=TFAP4 PE=1 SV=2
          Length = 338

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  P*HHPKTIMTSGQPPPPTRRLFLDTHGPKN 161
           P HHP T++    PPPP+  + + T GP +
Sbjct: 229 PTHHP-TVIVPAPPPPPSHHINVVTMGPSS 257


>sp|P97367|MEIS2_MOUSE Homeobox protein Meis2 OS=Mus musculus
           GN=Meis2 PE=2 SV=2
          Length = 477

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 132 LFLDTHGPKNCPKLHHLNTLPFFKALHGLLRHCTVENVFP 251
           ++ D H P+  P +HHLN  P   A      H    NV P
Sbjct: 23  MYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMP 62


>sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 OS=Homo sapiens
           GN=MEIS2 PE=1 SV=2
          Length = 477

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 132 LFLDTHGPKNCPKLHHLNTLPFFKALHGLLRHCTVENVFP 251
           ++ D H P+  P +HHLN  P   A      H    NV P
Sbjct: 23  MYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMP 62


>sp|Q9TKS6|MATK_SOYBN Maturase K OS=Glycine max GN=matK PE=3 SV=2
          Length = 505

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 306 DGFLDQLMVVFRLTFVASELNDTFEVVKSWNN 401
           +GF+  + ++F L F  S L + FE+VKS+NN
Sbjct: 93  EGFVVVVEILFSLQFCISSLRE-FEIVKSYNN 123


>sp|Q91VB3|PRM2_RATTU Protamine-2 OS=Rattus tunneyi GN=Prm2 PE=2
           SV=1
          Length = 105

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 100 HQGSHPHQPVASSSIHMVQKIAQNCIILTH---CHFLRHCMVC*GTARLRMC 246
           H+G H H+  +   +H + K  ++C        CH  RH   C  + R R C
Sbjct: 44  HRGHHRHRRCSRKRLHRIHKRRRSCRRRRRHSCCHRRRHRRGCRRSRRRRRC 95
tr_hit_id A5AA82
Definition tr|A5AA82|A5AA82_ASPNC Similarity to hypothetical protein CAD60743.1 - Podospora anserina OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
Align length 40
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916350|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_F11.
         (437 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AA82|A5AA82_ASPNC Similarity to hypothetical protein CAD607...    36   0.84 
tr|Q2S0S0|Q2S0S0_SALRD Polysulfide reductase chain C OS=Saliniba...    35   1.9  
tr|Q9YNK5|Q9YNK5_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    34   4.1  
tr|B0UFR6|B0UFR6_METS4 Threonine synthase OS=Methylobacterium sp...    34   4.1  
tr|Q8WAK0|Q8WAK0_9HYME Cytochrome b (Fragment) OS=Neozeleboria i...    33   9.2  
tr|Q234U2|Q234U2_TETTH Putative uncharacterized protein OS=Tetra...    33   9.2  
tr|B0DTY1|B0DTY1_LACBS Predicted protein OS=Laccaria bicolor (st...    33   9.2  

>tr|A5AA82|A5AA82_ASPNC Similarity to hypothetical protein
           CAD60743.1 - Podospora anserina OS=Aspergillus niger
           (strain CBS 513.88 / FGSC A1513) GN=An02g06900 PE=4 SV=1
          Length = 356

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +2

Query: 80  SSKDYNDIRAATPTNPSPLPRYTWSKKLPKIASS*HIAIF 199
           SS + +  R+ TP  P PLP  ++SK+LP+ + + H A F
Sbjct: 64  SSSEVSHSRSETPLTPPPLPNSSYSKELPRSSRNRHAATF 103


>tr|Q2S0S0|Q2S0S0_SALRD Polysulfide reductase chain C
           OS=Salinibacter ruber (strain DSM 13855) GN=SRU_2105
           PE=4 SV=1
          Length = 465

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
 Frame = -1

Query: 302 VLWIG------KLSSIFAKINDSWKHILNRAVP*QTMQ---CLKKWQCVKMMQFWAIFWT 150
           V W+G       +S+I       W+  +NRA    T+    C   W    + + WAI+WT
Sbjct: 59  VFWVGIGHAGTLISAILYLFRQHWRTAINRAAEAMTIFAVICALIWPTFHVGRVWAIYWT 118

Query: 149 MCIEEEATGW 120
           + I  +   W
Sbjct: 119 LPIPNQMAMW 128


>tr|Q9YNK5|Q9YNK5_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 72

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 290 GKLSSIFAKINDSWKHILNRAVP*QTMQCLKKW-QCVKMMQFWAIFWTMCIEEEATGWWG 114
           GK+  +   I+DS K+I+    P  TM C++ W Q V+ ++   + W     E  T    
Sbjct: 2   GKIRIMGKNISDSAKNIIVTLNPTITMTCMRPWNQKVQELKIGPMAWYSMSIESITNTTS 61

Query: 113 WLP*CHYS 90
           W   C Y+
Sbjct: 62  WAAYCEYN 69


>tr|B0UFR6|B0UFR6_METS4 Threonine synthase OS=Methylobacterium sp.
           (strain 4-46) GN=M446_2341 PE=4 SV=1
          Length = 471

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 23/108 (21%)
 Frame = -3

Query: 330 PLVDQEIHRSVVDRQT--------------LLNLCQNK*LLETHSQPCSALTNHAVP*KM 193
           PLVD EI R+ +DR                L+ L  N  LLE H  P  A  + A+    
Sbjct: 61  PLVDGEIPRAALDRMIEAAYAGFRHPAVCPLVQLDANLFLLELHHGPTLAFKDVAMQ--- 117

Query: 192 AMC*DDAILGNFLDHVYRGRG---------DGLVGVAALMSL*SLDDV 76
                  +LG  +DHV + RG          G  G AA+ +   LD V
Sbjct: 118 -------LLGRLMDHVLKARGSRATIVGATSGDTGSAAVEAFRGLDQV 158


>tr|Q8WAK0|Q8WAK0_9HYME Cytochrome b (Fragment) OS=Neozeleboria
           impatiens form 1 PE=3 SV=1
          Length = 228

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 161 IFWTMCIEEEATGWWGWLP*CHYSLWMMSWLNKSMTFNFFGLLNIIH 21
           +FWT  +      W G  P   Y    +S +N +M F+FF LLN ++
Sbjct: 175 LFWTFVVNMFMLTWLGAQP-IEYPFMTISQINSTMYFSFFFLLNYVN 220


>tr|Q234U2|Q234U2_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00100080 PE=4
            SV=1
          Length = 1236

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -1

Query: 215  TMQCLKKWQCVKMMQFWAIFWTMCIEEEATGWWGWLP*CHYSLWMMSWLNKSMTFNFF 42
            T   L  + C+ +   W ++W+  + ++ TG + +     Y+L   S+L    +FN F
Sbjct: 1052 TALALSLFSCLVLQDQWIVYWSFILMKQETGNFLFTENLSYNLLDFSFLKSDFSFNIF 1109


>tr|B0DTY1|B0DTY1_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_332743 PE=4 SV=1
          Length = 231

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 78  HHPKTIMTSGQPPPPTRRLFLDTHGPKNCPKLHH 179
           HHP T      PPPP+  + L  H P   P LHH
Sbjct: 201 HHPHTATRLNTPPPPSPPVSLTAHQP---PPLHH 231