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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916356
Clone id YMU001_000086_G06
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACGCAAGGGACATAAGTCAAAGTCCAAGTCTTTTGCCAGCTATTACCCACTTTTTCTGAC
CTAACAGAGAAGGGGTCAAGAAGAAACAAAGACTATGTGTTCACTTCATGGATGAGGATT
TTAGCTCAAGTTCTAATAAAGAAAAAGATTGGCGGCCACGGAAACTGTCACAAAGTGATG
TGATAGTCGACTTGGCCGGAAAGAAAGTCAGAGAATTGACCCGAAGTGATGACGTGGTAG
AATCCCGTATATGTGCTTGGAATTGCATTGAAATTTGTGGGCCGTAACGGTGCTGAAGTA
GCACTACCATAGGAACGCTGATGTGGCAGCTTTTGAGGCGTCAATTAGTAAAGCAGTTGA
CTTCCACTTTTGGGGGCGATCTATTTTAAGCAAGGTGTCATGTGCAATGGAATTGATTGT
ACTGTGCAAGTGAGGGTATGCAACTACCTCTCTAATCATGCACGCCCTTCTAGTGGCTCA
CAAAGTGCGAGGTTAGATCCTAAGCTGACTAAGACTGATGCTG
■■Homology search results ■■ -
sp_hit_id Q2UEA0
Definition sp|Q2UEA0|NUF2_ASPOR Probable kinetochore protein nuf2 OS=Aspergillus oryzae
Align length 63
Score (bit) 30.0
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916356|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_G06.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2UEA0|NUF2_ASPOR Probable kinetochore protein nuf2 OS=Asperg...    30   6.9  
sp|Q66H07|FANK1_RAT Fibronectin type 3 and ankyrin repeat domain...    30   7.0  
sp|Q6B858|FANK1_BOVIN Fibronectin type 3 and ankyrin repeat doma...    30   7.0  
sp|P28908|TNR8_HUMAN Tumor necrosis factor receptor superfamily ...    30   9.0  
sp|P43534|THI5_YEAST Pyrimidine precursor biosynthesis enzyme TH...    30   9.1  
sp|Q07748|THI13_YEAST Pyrimidine precursor biosynthesis enzyme T...    30   9.1  
sp|P42883|THI12_YEAST Pyrimidine precursor biosynthesis enzyme T...    30   9.1  
sp|P47183|THI11_YEAST Pyrimidine precursor biosynthesis enzyme T...    30   9.1  

>sp|Q2UEA0|NUF2_ASPOR Probable kinetochore protein nuf2
           OS=Aspergillus oryzae GN=nuf2 PE=3 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 75  VKKKQRLCVHFMDEDFSSSSNKEKDWRPRKLSQSDVIVDLAGKKVRELTRSDDVVESRIC 254
           V    + CV  + ED S    KE+D   R     + I +  G  VRE+ +++ +++ ++ 
Sbjct: 311 VSNDVQACVKLL-EDISVELQKEEDEESRASRNKEAISE-RGNSVREVEQTEKLLQRQLA 368

Query: 255 AWN 263
            WN
Sbjct: 369 RWN 371


>sp|Q66H07|FANK1_RAT Fibronectin type 3 and ankyrin repeat domains 1
           protein OS=Rattus norvegicus GN=Fank1 PE=2 SV=1
          Length = 344

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
 Frame = -2

Query: 453 REVVAYPHLHSTINSIAHDTLLKI--------DRPQKWKSTALLIDASKAAT 322
           RE ++  H H  +N    D LL+I        D P K+  TAL++ A K  T
Sbjct: 106 REPISSEHFHRAVNVNDEDLLLRILEGGHVMVDVPNKFGFTALMVAAQKGYT 157


>sp|Q6B858|FANK1_BOVIN Fibronectin type 3 and ankyrin repeat domains
           protein 1 OS=Bos taurus GN=FANK1 PE=2 SV=2
          Length = 345

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = -2

Query: 453 REVVAYPHLHSTINSIAHDTLL--------KIDRPQKWKSTALLIDASKAAT 322
           RE ++  HLH  +N    D L+        K+D P K+  TAL++ A +  T
Sbjct: 106 REPISSEHLHRAVNVNDEDLLVRILQGGNVKVDVPNKFGFTALMVAAQRGYT 157


>sp|P28908|TNR8_HUMAN Tumor necrosis factor receptor superfamily
           member 8 OS=Homo sapiens GN=TNFRSF8 PE=1 SV=1
          Length = 595

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 159 RKLSQSDVIVDLAGKKVRELTRS-DDVVESRICAWNCIEIC 278
           RK  + D  +D A +    +T S DD+VE   CAWN   +C
Sbjct: 66  RKQCEPDYYLDEADRCTACVTCSRDDLVEKTPCAWNSSRVC 106


>sp|P43534|THI5_YEAST Pyrimidine precursor biosynthesis enzyme THI5
           OS=Saccharomyces cerevisiae GN=THI5 PE=1 SV=1
          Length = 340

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 409 GIDCTVQVRVCNYLSNHARPSSGSQSARLD 498
           GI+C  QV +  YL+   RP+S ++  R+D
Sbjct: 159 GIECMQQVELEEYLAKQGRPASDAKMLRID 188


>sp|Q07748|THI13_YEAST Pyrimidine precursor biosynthesis enzyme
           THI13 OS=Saccharomyces cerevisiae GN=THI13 PE=1 SV=1
          Length = 340

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 409 GIDCTVQVRVCNYLSNHARPSSGSQSARLD 498
           GI+C  QV +  YL+   RP+S ++  R+D
Sbjct: 159 GIECMQQVELEEYLAKQGRPASDAKMLRID 188


>sp|P42883|THI12_YEAST Pyrimidine precursor biosynthesis enzyme
           THI12 OS=Saccharomyces cerevisiae GN=THI12 PE=3 SV=1
          Length = 340

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 409 GIDCTVQVRVCNYLSNHARPSSGSQSARLD 498
           GI+C  QV +  YL+   RP+S ++  R+D
Sbjct: 159 GIECMQQVELEEYLAKQGRPASDAKMLRID 188


>sp|P47183|THI11_YEAST Pyrimidine precursor biosynthesis enzyme
           THI11 OS=Saccharomyces cerevisiae GN=THI11 PE=1 SV=1
          Length = 340

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 409 GIDCTVQVRVCNYLSNHARPSSGSQSARLD 498
           GI+C  QV +  YL+   RP+S ++  R+D
Sbjct: 159 GIECMQQVELEEYLAKQGRPASDAKMLRID 188
tr_hit_id A8IZF4
Definition tr|A8IZF4|A8IZF4_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii
Align length 60
Score (bit) 33.5
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916356|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_G06.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8IZF4|A8IZF4_CHLRE Predicted protein (Fragment) OS=Chlamydom...    33   6.5  
tr|A7ST61|A7ST61_NEMVE Predicted protein OS=Nematostella vectens...    33   6.5  
tr|A3GFK7|A3GFK7_PICST Vacuolar acid trehalase OS=Pichia stipiti...    33   6.5  
tr|A3DDJ8|A3DDJ8_CLOTH Putative uncharacterized protein OS=Clost...    33   8.5  
tr|B4BD33|B4BD33_CLOTM Alanine racemase domain protein OS=Clostr...    33   8.5  

>tr|A8IZF4|A8IZF4_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_173900 PE=4
           SV=1
          Length = 287

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 141 EKDWRPRKLSQ--SDVIVDLAGKKVRELTRSDDVVESRICAWNCIEICGP*RC*SSTTIG 314
           + DW P    Q  SD+ + LA K +    R DD++ SR+  W   EI    RC SST  G
Sbjct: 151 DSDWNPHNDLQLKSDLSLTLALKSISNEARKDDLLSSRVAHWK-EEI----RCASSTCCG 205


>tr|A7ST61|A7ST61_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g130720 PE=3 SV=1
          Length = 268

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 111 DEDFSSSSNKEKDWRPRKLSQSDVIVDLAGKKVRELTRSDDVVESRICAWNCIEICGP*R 290
           DE+F   + + K+  P  +  S+ ++D+ GKKVR           R+  W  +E+  P  
Sbjct: 208 DEEFIEQTRQLKEGMPFAVVGSNTLIDVCGKKVR----------GRLYPWGVVEVENPIH 257

Query: 291 C*SSTTIGTLM 323
           C  S     LM
Sbjct: 258 CDFSKLRAMLM 268


>tr|A3GFK7|A3GFK7_PICST Vacuolar acid trehalase OS=Pichia stipitis
           GN=ATH1 PE=4 SV=1
          Length = 1083

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 147 DWRPRKLSQSDVIVDLAGKKVRELTRSDDVVESRICAW 260
           D  PR L   D ++  A K  +  T +DDVVES + AW
Sbjct: 382 DLDPRNLDSLDKVLAFAKKVSQTYTNADDVVESHLVAW 419


>tr|A3DDJ8|A3DDJ8_CLOTH Putative uncharacterized protein
           OS=Clostridium thermocellum (strain ATCC 27405 / DSM
           1237) GN=Cthe_0792 PE=4 SV=1
          Length = 234

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 183 IVDLAGKKVRELTRSDDVVESRICAWNCI 269
           +VDL   +V+ELT+  D++ SR C W+ I
Sbjct: 55  VVDLGENRVQELTKKYDILNSRKCKWHLI 83


>tr|B4BD33|B4BD33_CLOTM Alanine racemase domain protein
           OS=Clostridium thermocellum DSM 4150 GN=CtherDRAFT_1298
           PE=4 SV=1
          Length = 234

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 183 IVDLAGKKVRELTRSDDVVESRICAWNCI 269
           +VDL   +V+ELT+  D++ SR C W+ I
Sbjct: 55  VVDLGENRVQELTKKYDILNSRKCKWHLI 83