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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916357
Clone id YMU001_000086_G07
Library
Length 205
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCTATGCGCTGACCCTGTTATCTAAAGCTGAAGTGCAGGATTCATATCAAAGAGGAAACT
CATTTTCCTGCCTCTGCACGCTTTTTGAAAGAAAGCAAAACTCCATTCTGGCATACCATG
GAATCTTACCAAGATGCCCCTATTCTATTGGCACCCAACGCCTATACATTGACTCATCAT
GTGCATAGTGTCAAAACCTTATGTC
■■Homology search results ■■ -
sp_hit_id Q07XW5
Definition sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewanella frigidimarina (strain NCIMB 400)
Align length 43
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916357|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_G07.
         (205 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewane...    32   0.99 
sp|Q0HR40|MUTL_SHESR DNA mismatch repair protein mutL OS=Shewane...    31   2.2  
sp|Q0HMP1|MUTL_SHESM DNA mismatch repair protein mutL OS=Shewane...    31   2.2  
sp|Q8EJ70|MUTL_SHEON DNA mismatch repair protein mutL OS=Shewane...    31   2.2  
sp|A6WSV4|MUTL_SHEB8 DNA mismatch repair protein mutL OS=Shewane...    31   2.2  
sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculu...    30   2.9  
sp|A3D022|MUTL_SHEB5 DNA mismatch repair protein mutL OS=Shewane...    30   3.8  
sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapien...    30   3.8  
sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewane...    30   4.9  
sp|A9L3W1|MUTL_SHEB9 DNA mismatch repair protein mutL OS=Shewane...    29   6.4  
sp|A6VN10|MUTL_ACTSZ DNA mismatch repair protein mutL OS=Actinob...    29   6.4  
sp|Q12J93|MUTL_SHEDO DNA mismatch repair protein mutL OS=Shewane...    29   8.4  
sp|A0KJE0|LFTR_AERHH Leucyl/phenylalanyl-tRNA--protein transfera...    29   8.4  

>sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=mutL PE=3 SV=1
          Length = 619

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 195
           PA  RFLK  KT F H  E  +   I+ +   +TLTH+   V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIAIVRSDIHFTLTHNAKLVR 197


>sp|Q0HR40|MUTL_SHESR DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain MR-7) GN=mutL PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 195
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|Q0HMP1|MUTL_SHESM DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain MR-4) GN=mutL PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 195
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|Q8EJ70|MUTL_SHEON DNA mismatch repair protein mutL OS=Shewanella
           oneidensis GN=mutL PE=3 SV=1
          Length = 631

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 195
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|A6WSV4|MUTL_SHEB8 DNA mismatch repair protein mutL OS=Shewanella
           baltica (strain OS185) GN=mutL PE=3 SV=1
          Length = 630

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 195
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 156 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 198


>sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculus
           GN=Kif13a PE=1 SV=1
          Length = 1749

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 25  KLKCRIHIKEETHFPASARFLKESKTPFWHTMESYQDAPIL 147
           KL CR+ IKE T  P S       +  FW   ES   AP++
Sbjct: 868 KLTCRVIIKEATGLPISLSNFVFCQYTFWDQCESTVAAPVV 908


>sp|A3D022|MUTL_SHEB5 DNA mismatch repair protein mutL OS=Shewanella
           baltica (strain OS155 / ATCC BAA-1091) GN=mutL PE=3 SV=1
          Length = 638

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 195
           PA  RFLK  KT F H  E  +   ++     +TLTH+   V+
Sbjct: 156 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKMVR 198


>sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapiens
           GN=KIF13A PE=1 SV=2
          Length = 1805

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 25  KLKCRIHIKEETHFPASARFLKESKTPFWHTMESYQDAPIL 147
           KL CR+ IKE T  P +       +  FW   ES   AP++
Sbjct: 868 KLTCRVKIKEATGLPLNLSNFVFCQYTFWDQCESTVAAPVV 908


>sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain ANA-3) GN=mutL PE=3 SV=1
          Length = 648

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHH 180
           PA  RFLK  KT F H  E  +   ++     +TLTH+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHN 192


>sp|A9L3W1|MUTL_SHEB9 DNA mismatch repair protein mutL OS=Shewanella
           baltica (strain OS195) GN=mutL PE=3 SV=1
          Length = 638

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 67  PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 195
           PA  RFLK  KT F H  E  +   ++      TLTH+  +V+
Sbjct: 156 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHLTLTHNGKTVR 198
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916357|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_G07.
         (205 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******