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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916362
Clone id YMU001_000086_G12
Library
Length 309
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACACCCGTAGTGGGTTTTGGATCATTGCTCTCCGCCTGGTCTCCACTGAGCCAGAGCGTC
GAGGCCTTGTGTGGCAACTTTGCATTTCCACGTGGTCTCGCTGAGCTAGAGTGTCAGGCC
AGTTCAGAAGTTTTTGGCTGGTCTCTCGACAGAGACTCGCCCCCATTTTTGTTGTATGCC
ATACGGGTGAGCCTGAGGCTCCGAACCCGATTGTATCTCCTTTTTGGATTGAGCCGAGTT
GGCTCCTCTAGTGACGCCGGCCACTATAGACCCGGCCATGGTTTGCTCATTCGCGGCCGC
GAATGAGTA
■■Homology search results ■■ -
sp_hit_id Q5KFQ8
Definition sp|Q5KFQ8|HSE1_CRYNE Class E vacuolar protein-sorting machinery protein HSE1 OS=Cryptococcus neoformans
Align length 86
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916362|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_G12.
         (288 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5KFQ8|HSE1_CRYNE Class E vacuolar protein-sorting machinery ...    30   4.8  
sp|Q4R8T1|EFCB6_MACFA EF-hand calcium-binding domain-containing ...    29   6.3  

>sp|Q5KFQ8|HSE1_CRYNE Class E vacuolar protein-sorting machinery
           protein HSE1 OS=Cryptococcus neoformans GN=HSE1 PE=3
           SV=1
          Length = 660

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 27/86 (31%), Positives = 36/86 (41%)
 Frame = -2

Query: 260 PASLEEPTRLNPKRRYNRVRSLRLTRMAYNKNGGESLSRDQPKTSELA*HSSSARPRGNA 81
           P S EE  R   +    RV  L     +    GG SL   QP  S  A  SS+A    + 
Sbjct: 154 PESAEEVRRRQEEEELQRVLEL-----SKQDKGGRSLFTYQPSGSAGASSSSAANNNTSP 208

Query: 80  KLPHKASTLWLSGDQAESNDPKPTTG 3
            +P ++    L+ DQA+S      TG
Sbjct: 209 SIP-QSQAQPLAQDQAQSQAAPQVTG 233


>sp|Q4R8T1|EFCB6_MACFA EF-hand calcium-binding domain-containing
           protein 6 (Fragment) OS=Macaca fascicularis GN=EFCAB6
           PE=2 SV=2
          Length = 646

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 273 GSIVAGVTRGANSAQS--KKEIQSGSEPQAHP 184
           GS V  V+ G  SA S   +E++ GS+PQ+HP
Sbjct: 406 GSSVPDVSEGIRSALSLPNQELRPGSKPQSHP 437
tr_hit_id B2ATJ2
Definition tr|B2ATJ2|B2ATJ2_PODAN Predicted CDS Pa_1_16050 OS=Podospora anserina
Align length 62
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916362|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_G12.
         (288 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2ATJ2|B2ATJ2_PODAN Predicted CDS Pa_1_16050 OS=Podospora ans...    35   1.9  
tr|Q4KDE6|Q4KDE6_PSEF5 Isochorismatase family protein OS=Pseudom...    35   2.4  
tr|B3V685|B3V685_9EURY Putative uncharacterized protein OS=uncul...    34   3.2  
tr|A4Y1R0|A4Y1R0_SHEPC Type I site-specific deoxyribonuclease, H...    34   4.2  
tr|A8E4W9|A8E4W9_XENTR LOC100127587 protein (Fragment) OS=Xenopu...    33   5.5  
tr|B6H5F1|B6H5F1_PENCH Pc13g14170 protein OS=Penicillium chrysog...    33   9.3  
tr|B4MYS1|B4MYS1_DROWI GK18181 OS=Drosophila willistoni GN=GK181...    33   9.3  
tr|Q872T8|Q872T8_NEUCR Related to transcription factor TFIIH cha...    33   9.3  
tr|Q1DZV8|Q1DZV8_COCIM Putative uncharacterized protein OS=Cocci...    33   9.3  

>tr|B2ATJ2|B2ATJ2_PODAN Predicted CDS Pa_1_16050 OS=Podospora
           anserina PE=4 SV=1
          Length = 724

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -2

Query: 188 TRMAYNKNGGESLSRDQPKTSELA*HSSSARPRGNAKLPHKASTLWLSGDQAESNDPKPT 9
           T + ++ N G+ + R    TS+++  +   RP G A +P +AS + +  D  +SN+ KP 
Sbjct: 277 TCLDWDLNNGQIVRRFDGSTSQIS--AIELRPTGAAPIPAEASEVMVQSDTFQSNNDKPP 334

Query: 8   TG 3
            G
Sbjct: 335 IG 336


>tr|Q4KDE6|Q4KDE6_PSEF5 Isochorismatase family protein
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=PFL_2630 PE=4 SV=1
          Length = 179

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 SRQRLAPIFVVCHTGEPEAPNPIVSPFW 227
           +RQ  APIF V HTG  E+P    SPFW
Sbjct: 43  ARQAGAPIFAVRHTGPAESPIAAGSPFW 70


>tr|B3V685|B3V685_9EURY Putative uncharacterized protein
           OS=uncultured marine group III euryarchaeote
           SAT1000-53-B3 PE=4 SV=1
          Length = 492

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 251 LEEPTRLNPKRRYNRVRSLRLTRMAYNKNGGESLSRDQPKTSELA 117
           + E   LN  RRYN   SL + R  YN+   +SL+ + PK   LA
Sbjct: 346 IAEKFELNSSRRYNGENSLEILRNLYNRVVKDSLTSEYPKFRSLA 390


>tr|A4Y1R0|A4Y1R0_SHEPC Type I site-specific deoxyribonuclease, HsdR
           family OS=Shewanella putrefaciens (strain CN-32 / ATCC
           BAA-453) GN=Sputcn32_0157 PE=4 SV=1
          Length = 1096

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -3

Query: 193 GSPVWHTTKMGASLCRETSQKLLNWPDTLAQ------RDHVEMQSCHTRPRRSGSVETRR 32
           G  +WHTT  G S       K L W + LAQ       D V+++   +R   SG V T R
Sbjct: 346 GGVIWHTTGSGKSFTMVFLSKALTWLEELAQCRVIIVTDRVDLEDQLSRTFASGGVLTDR 405


>tr|A8E4W9|A8E4W9_XENTR LOC100127587 protein (Fragment) OS=Xenopus
           tropicalis GN=LOC100127587 PE=2 SV=1
          Length = 751

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
 Frame = -3

Query: 244 SQLGSIQKGDTIGFGASGS-----PVWHTTKMGASL--CRETSQKLLNWPDTLAQRDHVE 86
           S++ ++ +G+    G SG      P++ T  +G+    C+E+ Q+ +N   +   RDHV 
Sbjct: 408 SEISALNQGN----GRSGDYSTTLPLFQTGLLGSGEGDCQESPQQAVNCILSSGLRDHVC 463

Query: 85  MQSCHTRPRR-----SGSVETRRRAMIQNP 11
            Q+ H RP +     S  ++ R  A+ +NP
Sbjct: 464 EQNTHNRPNKVQSQPSNLLQERSAALSENP 493


>tr|B6H5F1|B6H5F1_PENCH Pc13g14170 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc13g14170 PE=3 SV=1
          Length = 449

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 1   TPVV-GFGSLLSAWSPLSQSVEALCGNFAFPRGLAELECQASSEVFGWSLDRDSP 162
           TPV+  F +L S W+ L  +  AL         LA +EC AS+   GW++D  SP
Sbjct: 323 TPVLPDFNNLKSQWATLHPTGVALSAYKKSASSLAAIECPASTS-GGWAIDPSSP 376


>tr|B4MYS1|B4MYS1_DROWI GK18181 OS=Drosophila willistoni GN=GK18181
            PE=4 SV=1
          Length = 5689

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -2

Query: 242  PTRLNPKRRYNRVRSLRLTRMAYNKNGGESLSRDQPKTSELA*HSSSARPRGNAKLPHKA 63
            PT     ++ +R  S     +   +NGG+S ++D P ++  A  ++S    GN    HK+
Sbjct: 2939 PTEDGEVQKISRDHSGLHNLVPRGRNGGKSNTKDCPGSTTPAPGTASGSNSGNTTPAHKS 2998

Query: 62   STLWLSGD 39
            S L ++GD
Sbjct: 2999 SALEMAGD 3006


>tr|Q872T8|Q872T8_NEUCR Related to transcription factor TFIIH chain
           p47 (Suppressor of stem-loop protein 1) OS=Neurospora
           crassa GN=B23G1.160 PE=4 SV=1
          Length = 416

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 205 FGASGSPVWHTTKMGASLCRETSQKLLNWPD-TLAQRDHVEMQSCHTRPRRSG 50
           F A+  PV  T +   +     S  ++ +P  TLA +DHV   +CH +P R G
Sbjct: 228 FAATTPPVTRTPEQNTA-----SLLMMGFPSRTLAPKDHVSFCACHAKPTREG 275


>tr|Q1DZV8|Q1DZV8_COCIM Putative uncharacterized protein
           OS=Coccidioides immitis GN=CIMG_04155 PE=4 SV=1
          Length = 319

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 110 SSSARPRGNAKLPHKASTLWLSGDQAESNDPKP 12
           S++A P  +  + HKA  +WLS  QA S  P+P
Sbjct: 13  STAAPPAASCPVDHKAREVWLSKSQASSPPPRP 45