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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916366
Clone id YMU001_000086_H06
Library
Length 366
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000086_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACCATTAGGAATCGGCCAAGCACAATCGAGGGCATTGTAAGCTTTGAGAAGACCTTGGGT
CGGGCATTGGTGATTACACACTCTTGGAACTTGCAGGAAATTTGGGTAGCCATAACTAGA
AAATTGGCAAGCTTGAAAGGAATCACAACTGCAATACCGAGCAGAACATTGAAGGCACAC
ATAGTGTGCAGGTAAGCATAGCATCTGCAAATAATCGAGCAATTGGGAAAGTCTGGCTCA
AAGTGAGAGAGTGGAAAATAGCGGAATTTGAAGGGCGAGGCATGGAGCAGGTCAATGCCG
GGTGATGCAGCCAAAGAATAGAGAGAGAGCGCGAGCTTGTGATGGTGTTGCTCTCACACA
CACACG
■■Homology search results ■■ -
sp_hit_id Q6KAS7
Definition sp|Q6KAS7|ZN521_MOUSE Zinc finger protein 521 OS=Mus musculus
Align length 17
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916366|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_H06.
         (366 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6KAS7|ZN521_MOUSE Zinc finger protein 521 OS=Mus musculus GN...    30   3.7  
sp|Q96K83|ZN521_HUMAN Zinc finger protein 521 OS=Homo sapiens GN...    30   3.7  
sp|Q9QY66|ZNHI2_MOUSE Zinc finger HIT domain-containing protein ...    30   4.9  
sp|Q6NUD7|ZN521_XENLA Zinc finger protein 521 OS=Xenopus laevis ...    30   4.9  
sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus (is...    30   4.9  
sp|Q5T2D2|TRML2_HUMAN Trem-like transcript 2 protein OS=Homo sap...    29   6.4  
sp|O54835|SMAD9_RAT Mothers against decapentaplegic homolog 9 OS...    29   6.4  
sp|Q5HBQ7|MUTS_EHRRW DNA mismatch repair protein mutS OS=Ehrlich...    29   6.4  
sp|Q5FHE8|MUTS_EHRRG DNA mismatch repair protein mutS OS=Ehrlich...    29   6.4  
sp|P49920|CBG_SHEEP Corticosteroid-binding globulin OS=Ovis arie...    29   8.3  

>sp|Q6KAS7|ZN521_MOUSE Zinc finger protein 521 OS=Mus musculus
           GN=Znf521 PE=2 SV=2
          Length = 1311

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 183 YVCLQCSARYCSCDSFQ 133
           Y+C QC A+Y S DSFQ
Sbjct: 634 YICNQCGAKYTSLDSFQ 650


>sp|Q96K83|ZN521_HUMAN Zinc finger protein 521 OS=Homo sapiens
           GN=ZNF521 PE=1 SV=1
          Length = 1311

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 183 YVCLQCSARYCSCDSFQ 133
           Y+C QC A+Y S DSFQ
Sbjct: 634 YICNQCGAKYTSLDSFQ 650


>sp|Q9QY66|ZNHI2_MOUSE Zinc finger HIT domain-containing protein 2
           OS=Mus musculus GN=Znhit2 PE=2 SV=2
          Length = 399

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 195 LPAHYVCLQCSARYCSCDSFQA 130
           LPA Y C +C+A YCS   ++A
Sbjct: 16  LPARYTCPRCNAPYCSLRCYRA 37


>sp|Q6NUD7|ZN521_XENLA Zinc finger protein 521 OS=Xenopus laevis
           GN=znf521 PE=2 SV=1
          Length = 1310

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 195 LPAHYVCLQCSARYCSCDSFQ 133
           L   Y+C QC A+Y S D FQ
Sbjct: 629 LAGEYICNQCGAKYTSLDGFQ 649


>sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein OS=Arabis mosaic virus
           (isolate NW) PE=3 SV=1
          Length = 2284

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +3

Query: 39  KL*EDLGSGIGDYTLLELAGNLGSHN*KIGKLERNHNCNTEQNIEGTHSVQVSIASANNR 218
           K+ + +GS +GD+  +  AG L + +  I  L++      ++    T +  +S  +  + 
Sbjct: 426 KMAKGVGSIVGDFARMSGAGVLITFDRCIEYLQKKALTFCQKVFNATMAPYLSHLAEASN 485

Query: 219 AIGKVWLKVREW 254
            I K+W K+ EW
Sbjct: 486 IISKIWKKLAEW 497


>sp|Q5T2D2|TRML2_HUMAN Trem-like transcript 2 protein OS=Homo
           sapiens GN=TREML2 PE=2 SV=2
          Length = 321

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 168 IEG-THSVQVSIASANNRAIGKVWLKVREWK 257
           +EG T SVQ S     NR  GKVW K+R+ K
Sbjct: 32  LEGETLSVQCSYKGYKNRVEGKVWCKIRKKK 62


>sp|O54835|SMAD9_RAT Mothers against decapentaplegic homolog 9
           OS=Rattus norvegicus GN=Smad9 PE=1 SV=1
          Length = 434

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 364 CVCESNTITSSRSLSILWLHHPALTCSMPRPSNSAIFHSLTLSQTFPIARLFADAM 197
           CV +S+    SR+ +     HPA  C +P   +  +F++   +Q   +A+L A ++
Sbjct: 312 CVSDSSIFVQSRNCNYQHGFHPATVCKIPSGCSLKVFNNQLFAQL--LAQLLAQSV 365


>sp|Q5HBQ7|MUTS_EHRRW DNA mismatch repair protein mutS OS=Ehrlichia
           ruminantium (strain Welgevonden) GN=mutS PE=3 SV=1
          Length = 804

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 48  EDLGSGIGDYTLLELAGNLGSHN*KIGKLERNHNCNTEQNIEGTHSVQVSIASANNRAIG 227
           +++G G G Y  L +A ++         +E+ HN N  + I  TH  ++S      + I 
Sbjct: 693 DEIGRGTGTYDGLSIAWSV---------IEQIHNVNKSRAIFATHYHELSKLDKYLKHIK 743

Query: 228 KVWLKVREW 254
              +KV EW
Sbjct: 744 CFCMKVEEW 752


>sp|Q5FHE8|MUTS_EHRRG DNA mismatch repair protein mutS OS=Ehrlichia
           ruminantium (strain Gardel) GN=mutS PE=3 SV=1
          Length = 804

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 48  EDLGSGIGDYTLLELAGNLGSHN*KIGKLERNHNCNTEQNIEGTHSVQVSIASANNRAIG 227
           +++G G G Y  L +A ++         +E+ HN N  + I  TH  ++S      + I 
Sbjct: 693 DEIGRGTGTYDGLSIAWSV---------IEQIHNVNKSRAIFATHYHELSKLDKYLKHIK 743

Query: 228 KVWLKVREW 254
              +KV EW
Sbjct: 744 CFCMKVEEW 752


>sp|P49920|CBG_SHEEP Corticosteroid-binding globulin OS=Ovis aries
           GN=SERPINA6 PE=2 SV=1
          Length = 430

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 28  EGIVSFEKTLGRALVITHSWNLQEIWVAITRKLASLKGITT 150
           E   + E T+G AL + HS  L E + A T+    L+ +TT
Sbjct: 117 ESNTTLEMTMGNALFLDHSLELLESFSADTKHYYELEALTT 157
tr_hit_id Q23AK5
Definition tr|Q23AK5|Q23AK5_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 53
Score (bit) 39.7
E-value 0.076
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916366|Adiantum capillus-veneris mRNA, clone:
YMU001_000086_H06.
         (366 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q23AK5|Q23AK5_TETTH Putative uncharacterized protein OS=Tetra...    40   0.076
tr|Q23AL3|Q23AL3_TETTH Putative uncharacterized protein OS=Tetra...    35   1.9  
tr|Q22DK2|Q22DK2_TETTH Putative uncharacterized protein OS=Tetra...    34   3.2  
tr|A0EBC6|A0EBC6_PARTE Chromosome undetermined scaffold_88, whol...    34   4.2  
tr|Q24DM6|Q24DM6_TETTH Putative uncharacterized protein OS=Tetra...    33   5.4  
tr|Q22WG6|Q22WG6_TETTH EGF-like domain containing protein OS=Tet...    33   5.4  
tr|A0DMF8|A0DMF8_PARTE Chromosome undetermined scaffold_56, whol...    33   5.4  

>tr|Q23AK5|Q23AK5_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00424550 PE=4
           SV=1
          Length = 599

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -1

Query: 180 VCLQCSARYCSCDSFQACQFSSYGYPNFLQVPRVCNHQCPTQGLLKAYNALDC 22
           +C+QC      CD+ Q C      Y  FLQ+   CN QCP+   +   N   C
Sbjct: 287 ICVQCPTNCAQCDTQQKCLVCITNY--FLQLDNSCNTQCPSSSQINPSNNNQC 337


>tr|Q23AL3|Q23AL3_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00424470 PE=4
           SV=1
          Length = 523

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -1

Query: 177 CLQCSARYCSCDSFQACQFSSYGYPNFLQVPRVCNHQCP 61
           C +CSA    C   Q CQ  S GY  FLQ  + C   CP
Sbjct: 187 CEKCSANCLKCSDSQECQKCSDGY--FLQFDKTCQKICP 223


>tr|Q22DK2|Q22DK2_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00942780 PE=4
           SV=1
          Length = 476

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 171 QCSARYCS-CDSFQACQFSSYGYPNFLQVPRVCNHQCPTQGLLKAYN 34
           QC    CS C   Q CQ    G  NFLQ  + CN+ CP+   +   N
Sbjct: 30  QCCISKCSECIDGQTCQVCIQG--NFLQFDKTCNNSCPSSAQVDTIN 74


>tr|A0EBC6|A0EBC6_PARTE Chromosome undetermined scaffold_88, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00025327001 PE=4 SV=1
          Length = 1760

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 216  DYLQMLCLPAHYVCLQCSARYCSCDSFQACQFSSYGYPNFLQVPRVCNHQCPTQGL 49
            D + ++C   HY CL C      CDS   CQ +SY   N L    +CN      G+
Sbjct: 889  DGVNIVCQKCHYSCLTCIITSTRCDS---CQVNSYRTYNPLLQSCLCNDHYYDSGI 941


>tr|Q24DM6|Q24DM6_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_01144950 PE=4
            SV=2
          Length = 1800

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 180  VCLQCSARYCSCDSFQACQFSSYGYPNFLQVPRVCNHQCPT 58
            VC QC +    C S  AC+  + G+  +L +   C  QCPT
Sbjct: 1134 VCQQCPSNCDQCSSQTACKVCTSGF--YLTIDNTCVSQCPT 1172


>tr|Q22WG6|Q22WG6_TETTH EGF-like domain containing protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00156690 PE=4
            SV=1
          Length = 2581

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 180  VCLQCSARYCSCDSFQACQFSSYGYPNFLQVPRVCNHQC 64
            +CLQC+    +C S+ AC     GY  FL    +C   C
Sbjct: 1031 ICLQCNTNCLTCSSYTACLSCQPGY--FLDENNICRQYC 1067


>tr|A0DMF8|A0DMF8_PARTE Chromosome undetermined scaffold_56, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00018443001 PE=4 SV=1
          Length = 1798

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 183 YVCLQCSARYCSCDSFQ---ACQFSSYGYPNFLQVPRVCNHQCPTQGLLKAYNALDC 22
           + CL+C+ +   C SF     CQ  +Y     + V   CN+ CP Q   K  N+  C
Sbjct: 492 FQCLECAQKCKKCTSFSYCTQCQDGNYLEETIIGVQANCNNYCP-QNCTKCKNSSQC 547