BP916373
Clone id YMU001_000087_A04
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATCTTCTGACAGCTTAAGTGGTTCTCCGCCGGTGGATTGTCATGCACTGGCCAGCTGCTC
AGAACCTGAGAATATGAATTTTGGAGAGTGGGAAAATCTTAGAGAAATTCAAAAAGATGA
AGCTCAGCTGCTATCTTGTGGCAATCAGCTTAGAACTAATTATCACTCGTCAAACGGGGA
GCCAGCAGTGCTCCAAGAACATTACAATATTAGGGGAACTGCAAAGAGTCATACTAATAC
CAAACGGAAAATATATACCCGGAGGGAAAGAAGAGGTACCAGTAACCAGATATTTAATGG
GGTCAGTTTCCTACTTACGGGATTTTCTGCCAGTCAAAAGAAGATAGTGGAAGATCTCTC
TAAGAAAGTTCAAGAGCATGGTGGAGTCATCATGTCAAGTATCCCTAGTTTATCAAGTCT
AAATGGACAGAGGAGACTCCTGAAGCAGCATACAACTTCACATTCTATTGTGTTAGCGCC
ACAAAAGGTCCTCTTGGCTTTCGCTGGG
■■Homology search results ■■ -
sp_hit_id Q5ZLK2
Definition sp|Q5ZLK2|UBX2B_CHICK UBX domain-containing protein 2B OS=Gallus gallus
Align length 97
Score (bit) 32.7
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916373|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A04.
(508 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5ZLK2|UBX2B_CHICK UBX domain-containing protein 2B OS=Gallus... 33 1.0
sp|O61643|INHB_DROME Inhibin beta chain OS=Drosophila melanogast... 32 2.3
sp|A4FZL0|TYPH_METM5 Putative thymidine phosphorylase OS=Methano... 30 4.9
sp|Q9PKV2|Y359_CHLMU Uncharacterized protein TC_0359 OS=Chlamydi... 30 5.0
sp|Q15032|R3HD1_HUMAN R3H domain-containing protein 1 OS=Homo sa... 30 5.0
sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis... 30 5.0
sp|P0C064|GRSB_BREBE Gramicidin S synthetase 2 OS=Brevibacillus ... 30 5.0
sp|P0C063|GRSB_ANEMI Gramicidin S synthetase 2 OS=Aneurinibacill... 30 5.0
sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9 O... 30 6.6
sp|A6VIW6|TYPH_METM7 Putative thymidine phosphorylase OS=Methano... 30 8.4
sp|O14299|WIS4_SCHPO MAP kinase kinase kinase wis4 OS=Schizosacc... 30 8.6
sp|Q94AW5|ERF03_ARATH Ethylene-responsive transcription factor E... 30 8.6

>sp|Q5ZLK2|UBX2B_CHICK UBX domain-containing protein 2B OS=Gallus
gallus GN=UBXN2B PE=2 SV=1
Length = 365

Score = 32.7 bits (73), Expect = 1.0
Identities = 25/97 (25%), Positives = 46/97 (47%)
Frame = +2

Query: 98 LREIQKDEAQLLSCGNQLRTNYHSSNGEPAVLQEHYNIRGTAKSHTNTKRKIYTRRERRG 277
L E+ +DEA+ S + T SN + + ++R +S ++ K +R
Sbjct: 44 LAELYEDEAKRQSLRSDKPTTTKMSNSKGLKIDSFRSLRKPERSMSDDKEN-----QRFY 98

Query: 278 TSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGV 388
+ + + G+ + G S + KIV +L K+ +EHG V
Sbjct: 99 SGDSEYRGLQ--IWGASNNPSKIVAELFKEAKEHGAV 133


>sp|O61643|INHB_DROME Inhibin beta chain OS=Drosophila melanogaster
GN=Actbeta PE=2 SV=2
Length = 946

Score = 31.6 bits (70), Expect = 2.3
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2

Query: 119 EAQLLSCGNQLRTNYHSSNGEPAVLQEHYNIRGTAKSHTNTKRKIYTRRERRGTSNQIFN 298
E +L++C +NY++SN L+ H +G H + K IYT ++ T I+N
Sbjct: 293 EVKLINCNGISSSNYYASN-----LESH---KGCTLCHESGKPNIYTDKDNPHTDYNIYN 344


>sp|A4FZL0|TYPH_METM5 Putative thymidine phosphorylase
OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
GN=MmarC5_1346 PE=3 SV=1
Length = 505

Score = 30.4 bits (67), Expect = 4.9
Identities = 26/66 (39%), Positives = 31/66 (46%)
Frame = +3

Query: 60 QNLRI*ILESGKILEKFKKMKLSCYLVAISLELIITRQTGSQQCSKNITILGELQRVILI 239
QNL ILESGK LEKF + IIT Q G+ + + I LG+ IL
Sbjct: 377 QNLAWEILESGKALEKFNQ--------------IITEQGGTPKKPEEIE-LGDYVEEILA 421

Query: 240 PNGKYI 257
P YI
Sbjct: 422 PIDGYI 427


>sp|Q9PKV2|Y359_CHLMU Uncharacterized protein TC_0359 OS=Chlamydia
muridarum GN=TC_0359 PE=3 SV=1
Length = 579

Score = 30.4 bits (67), Expect = 5.0
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2

Query: 311 LLTGFSASQKKI---VEDLSKKVQEHGGVIMSSIPSLSSLNGQRRLLKQHTTS 460
+LT +QK++ DLS + + +++SS PS SSL R LLK+ +S
Sbjct: 57 VLTNLFGTQKRVDLLFPDLSSGIFDQIAILLSSPPSFSSLWQHRSLLKRGLSS 109


>sp|Q15032|R3HD1_HUMAN R3H domain-containing protein 1 OS=Homo
sapiens GN=R3HDM1 PE=1 SV=3
Length = 1099

Score = 30.4 bits (67), Expect = 5.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2

Query: 278 TSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSSIPSLSSL 421
T F+G+S L G S+ K + LSK E G + SS SLS +
Sbjct: 377 TKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHI 424


>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis
GN=ssb-B PE=2 SV=1
Length = 427

Score = 30.4 bits (67), Expect = 5.0
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +2

Query: 224 KSHTNTKRKIYTRRERRGTSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSSI 403
K N K I + RR T + F G FL+ KK +ED + K +++ +I+S
Sbjct: 127 KEWLNDKGPIENIQMRR-TLQREFKGSVFLVFNTEDGAKKFLEDKNLKYKDNDMIILSRE 185

Query: 404 PSLSSLNGQRRLLKQHTTSHS 466
+ N +R+L K + S
Sbjct: 186 EYFAKKNEERKLNKSEEKAKS 206


>sp|P0C064|GRSB_BREBE Gramicidin S synthetase 2 OS=Brevibacillus
brevis GN=grsB PE=1 SV=2
Length = 4450

Score = 30.4 bits (67), Expect = 5.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2

Query: 95 NLREIQKDEAQLLSCGNQLRTNYHSSNGEPAVLQEHYNI 211
N R+++ +L+ LRT++HS NGEP V + H N+
Sbjct: 1097 NYRQLEAAVKKLVERHEALRTSFHSINGEP-VQRVHQNV 1134


>sp|P0C063|GRSB_ANEMI Gramicidin S synthetase 2 OS=Aneurinibacillus
migulanus GN=grsB PE=3 SV=2
Length = 4451

Score = 30.4 bits (67), Expect = 5.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2

Query: 95 NLREIQKDEAQLLSCGNQLRTNYHSSNGEPAVLQEHYNI 211
N R+++ +L+ LRT++HS NGEP V + H N+
Sbjct: 1097 NYRQLEAAVKKLVERHEALRTSFHSINGEP-VQRVHQNV 1134


>sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9
OS=Homo sapiens GN=PRDM9 PE=2 SV=2
Length = 894

Score = 30.0 bits (66), Expect = 6.6
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +2

Query: 77 NFGEWENLREIQKDEAQLLSCGNQLRTNYHSSNGEPAVLQEHYNIRGTAKSHTNTKRKIY 256
+F +L+E+ + L + G++ S +GE + +H ++ + T+RK+Y
Sbjct: 123 SFSNESSLKELSRTANLLNASGSEQAQKPVSPSGEASTSGQHSRLKLELRKK-ETERKMY 181

Query: 257 TRRERRG 277
+ RER+G
Sbjct: 182 SLRERKG 188


>sp|A6VIW6|TYPH_METM7 Putative thymidine phosphorylase
OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
GN=MmarC7_1329 PE=3 SV=1
Length = 505

Score = 29.6 bits (65), Expect = 8.4
Identities = 26/66 (39%), Positives = 30/66 (45%)
Frame = +3

Query: 60 QNLRI*ILESGKILEKFKKMKLSCYLVAISLELIITRQTGSQQCSKNITILGELQRVILI 239
QNL ILESGK LEKF + II Q G+ + + I LGE IL
Sbjct: 377 QNLAWEILESGKALEKFNQ--------------IIVEQGGTPKKPEEIE-LGEYVEEILA 421

Query: 240 PNGKYI 257
P YI
Sbjct: 422 PIDGYI 427


tr_hit_id Q7XZG4
Definition tr|Q7XZG4|Q7XZG4_ORYSJ Putative uncharacterized protein OSJNBb0033J23.7 OS=Oryza sativa subsp. japonica
Align length 79
Score (bit) 45.1
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916373|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A04.
(508 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7XZG4|Q7XZG4_ORYSJ Putative uncharacterized protein OSJNBb00... 45 0.002
tr|Q6ATS1|Q6ATS1_ORYSJ Os03g0811200 protein OS=Oryza sativa subs... 45 0.002
tr|A3ANY0|A3ANY0_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.002
tr|B8AMB9|B8AMB9_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003
tr|A7QME7|A7QME7_VITVI Chromosome undetermined scaffold_125, who... 44 0.005
tr|Q6C437|Q6C437_YARLI YALI0E29997p OS=Yarrowia lipolytica GN=YA... 37 0.55
tr|A7BKK8|A7BKK8_9GAMM WD-40 repeat protein OS=Beggiatoa sp. SS ... 35 2.1
tr|Q6ILZ8|Q6ILZ8_DROME HDC07888 OS=Drosophila melanogaster GN=HD... 35 2.1
tr|B3L0G0|B3L0G0_PLAKH Replication factor C subunit 1, putative ... 35 2.1
tr|Q5CFV7|Q5CFV7_CRYHO Transmembrane protein OS=Cryptosporidium ... 35 2.7
tr|Q1PWG1|Q1PWG1_9BACT Putative uncharacterized protein OS=Candi... 34 3.6
tr|Q7YY16|Q7YY16_CRYPV Putative uncharacterized protein OS=Crypt... 34 3.6
tr|Q5CXF5|Q5CXF5_CRYPV Putative uncharacterized protein OS=Crypt... 34 3.6
tr|Q22NY8|Q22NY8_TETTH Putative uncharacterized protein OS=Tetra... 34 3.6
tr|B3M6K9|B3M6K9_DROAN GF24896 OS=Drosophila ananassae GN=GF2489... 34 3.6
tr|Q8D6K1|Q8D6K1_VIBVU Methyl-accepting chemotaxis protein OS=Vi... 34 4.7
tr|Q7NBE3|Q7NBE3_MYCGA Putative uncharacterized protein OS=Mycop... 34 4.7
tr|Q7MDF9|Q7MDF9_VIBVY Methyl-accepting chemotaxis protein OS=Vi... 34 4.7
tr|A5FNA2|A5FNA2_FLAJ1 FAD dependent oxidoreductase OS=Flavobact... 34 4.7
tr|B4NFN6|B4NFN6_DROWI GK22674 OS=Drosophila willistoni GN=GK226... 34 4.7
tr|A2FD36|A2FD36_TRIVA Viral A-type inclusion protein, putative ... 34 4.7
tr|B2AWA2|B2AWA2_PODAN Predicted CDS Pa_7_6470 OS=Podospora anse... 34 4.7
tr|A7TEV9|A7TEV9_VANPO Putative uncharacterized protein OS=Vande... 33 6.1
tr|Q7RG53|Q7RG53_PLAYO Replication factor C, 140 kDa subunit OS=... 33 8.0
tr|Q22SB2|Q22SB2_TETTH ABC transporter family protein OS=Tetrahy... 33 8.0
tr|B2AA04|B2AA04_PODAN Predicted CDS Pa_1_2390 (Fragment) OS=Pod... 33 8.0
tr|A3LP57|A3LP57_PICST DNA ATP-dependent helicase OS=Pichia stip... 33 8.0

>tr|Q7XZG4|Q7XZG4_ORYSJ Putative uncharacterized protein
OSJNBb0033J23.7 OS=Oryza sativa subsp. japonica
GN=OSJNBb0033J23.7 PE=4 SV=1
Length = 850

Score = 45.1 bits (105), Expect = 0.002
Identities = 27/79 (34%), Positives = 46/79 (58%)
Frame = +2

Query: 263 RERRGTSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSSIPSLSSLNGQRRLL 442
RE +F+G+ FLLTGF + ++K +E L +++ GG ++S +PS L+ + +L
Sbjct: 598 REYIDNKEALFHGLDFLLTGFQSHKEKEIEPL---IRKFGGYVLSRVPS-CPLDKRSKLA 653

Query: 443 KQHTTSHSIVLAPQKVLLA 499
+ IVL+P+KV A
Sbjct: 654 ELARCKPPIVLSPKKVSTA 672


>tr|Q6ATS1|Q6ATS1_ORYSJ Os03g0811200 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0028F23.1 PE=4 SV=1
Length = 883

Score = 45.1 bits (105), Expect = 0.002
Identities = 27/79 (34%), Positives = 46/79 (58%)
Frame = +2

Query: 263 RERRGTSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSSIPSLSSLNGQRRLL 442
RE +F+G+ FLLTGF + ++K +E L +++ GG ++S +PS L+ + +L
Sbjct: 631 REYIDNKEALFHGLDFLLTGFQSHKEKEIEPL---IRKFGGYVLSRVPS-CPLDKRSKLA 686

Query: 443 KQHTTSHSIVLAPQKVLLA 499
+ IVL+P+KV A
Sbjct: 687 ELARCKPPIVLSPKKVSTA 705


>tr|A3ANY0|A3ANY0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_012502 PE=4 SV=1
Length = 863

Score = 45.1 bits (105), Expect = 0.002
Identities = 27/79 (34%), Positives = 46/79 (58%)
Frame = +2

Query: 263 RERRGTSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSSIPSLSSLNGQRRLL 442
RE +F+G+ FLLTGF + ++K +E L +++ GG ++S +PS L+ + +L
Sbjct: 598 REYIDNKEALFHGLDFLLTGFQSHKEKEIEPL---IRKFGGYVLSRVPS-CPLDKRSKLA 653

Query: 443 KQHTTSHSIVLAPQKVLLA 499
+ IVL+P+KV A
Sbjct: 654 ELARCKPPIVLSPKKVSTA 672


>tr|B8AMB9|B8AMB9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_14021 PE=4 SV=1
Length = 883

Score = 44.7 bits (104), Expect = 0.003
Identities = 27/79 (34%), Positives = 46/79 (58%)
Frame = +2

Query: 263 RERRGTSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSSIPSLSSLNGQRRLL 442
RE +F+G+ FLLTGF + ++K +E L +++ GG ++S +PS L+ + +L
Sbjct: 631 REYIDNKEALFHGLDFLLTGFQSHKEKEIEPL---IRKFGGYVLSRVPS-CPLDKRSKLA 686

Query: 443 KQHTTSHSIVLAPQKVLLA 499
+ IVL+P+KV A
Sbjct: 687 ELARCKPLIVLSPKKVSTA 705


>tr|A7QME7|A7QME7_VITVI Chromosome undetermined scaffold_125, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00002037001 PE=4 SV=1
Length = 693

Score = 43.9 bits (102), Expect = 0.005
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2

Query: 290 IFNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSSIPSLSSLNGQRRLLKQHTTSH-S 466
IF G+ FLLTGFS+ ++K +E L ++++GG+++ IPS S N +R+ H
Sbjct: 451 IFQGLEFLLTGFSSCKEKEIEGL---IRKYGGIVLPDIPSPS--NSRRKRNSNFNQKHLP 505

Query: 467 IVLAPQKV 490
IVL +K+
Sbjct: 506 IVLCSKKL 513


>tr|Q6C437|Q6C437_YARLI YALI0E29997p OS=Yarrowia lipolytica
GN=YALI0E29997g PE=4 SV=1
Length = 674

Score = 37.0 bits (84), Expect = 0.55
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +2

Query: 326 SASQKKIVEDLSKKVQEHGGVIMSSIPSLSSLNGQRRLLKQHTTSHSIVLAPQKVLLA 499
S +++ +EDL+ V+ G + S +L+S + ++KQ +H I+LA Q+VLLA
Sbjct: 136 SQDKEEEIEDLADNVRNLQGQMASLKKTLASKERETSIVKQQNQAHKILLAKQEVLLA 193


>tr|A7BKK8|A7BKK8_9GAMM WD-40 repeat protein OS=Beggiatoa sp. SS
GN=BGS_0124 PE=4 SV=1
Length = 222

Score = 35.0 bits (79), Expect = 2.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2

Query: 41 HALASCSEPENMNFGEWENLREIQK--DEAQLLSCGNQLRTNYHSSNGE 181
H + S S + + F EW++ +E K D+ QLL G QL NY +N +
Sbjct: 163 HEIISASADKTVRFWEWQHFKEKAKSDDQTQLLDKGCQLLKNYLENNNK 211


>tr|Q6ILZ8|Q6ILZ8_DROME HDC07888 OS=Drosophila melanogaster
GN=HDC07888 PE=4 SV=1
Length = 194

Score = 35.0 bits (79), Expect = 2.1
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Frame = +2

Query: 92 ENLREIQKDEAQLLSCGNQLRTNYHSS-------NGEPAVLQEHYNIRGTAKSHTNTKRK 250
++L + ++ L CG QL+ YH S N P VL NI+ + T + R
Sbjct: 90 QSLGARSRSRSKKLGCGAQLKYVYHQSERHGYLYNLLPTVLG---NIKNSLTGSTQSHRP 146

Query: 251 IYTRRERRGTSNQIFNGVSFLLTGFSASQKKIVEDLSKKVQE 376
+ R E +G+ F+ +SF + +K +E L+ K +E
Sbjct: 147 VERRMEAKGSCCSFFDFLSFRKRVEKDNSRKSLELLAYKDEE 188


>tr|B3L0G0|B3L0G0_PLAKH Replication factor C subunit 1, putative
OS=Plasmodium knowlesi (strain H) GN=PKH_040080 PE=4
SV=1
Length = 900

Score = 35.0 bits (79), Expect = 2.1
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +2

Query: 164 HSSNGEPAVLQEHYNIRG---TAKSHTNTKRKIYTRRERRGTSNQIFNGVSFLLTGFSAS 334
H++ G A + N G T K + T + F+ + F+LTG +
Sbjct: 146 HTTTGGKAKEESDLNNSGGNITKKKNDTTSTSTINANKNNNFDYLPFHSLKFVLTGVFKN 205

Query: 335 QKKIVEDLSKKVQEHGGVIMSSIPS 409
+ ++L K++EHGG +MS++ S
Sbjct: 206 FSR--DELQSKIKEHGGNVMSAVSS 228


>tr|Q5CFV7|Q5CFV7_CRYHO Transmembrane protein OS=Cryptosporidium
hominis GN=Chro.60162 PE=4 SV=1
Length = 608

Score = 34.7 bits (78), Expect = 2.7
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2

Query: 227 SHTNTKRKIYTRRERRGTSNQI-FNGVSFLLTGFSASQKKIVEDLSKKVQEHGGVIMSS 400
S+T +K+ I+ GTSN+I ++G+S + G +S+ + +E+LS ++ +HG + +S
Sbjct: 225 SNTISKKSIFNFNNINGTSNEINYHGLSTIHEGSESSEAEEIENLS-EIDKHGSKLRNS 282