BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916374|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A05.
         (381 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription...    37   0.039
sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription...    34   0.26 
sp|Q9FLX3|FB293_ARATH F-box protein At5g52880 OS=Arabidopsis tha...    29   8.2  
sp|Q5FLL4|DNLJ_LACAC DNA ligase OS=Lactobacillus acidophilus GN=...    29   8.2  

>sp|A1D887|SRB8_NEOFI Mediator of RNA polymerase II transcription
           subunit 12 OS=Neosartorya fischeri (strain ATCC 1020 /
           DSM 3700 / NRRL 181) GN=srb8 PE=3 SV=1
          Length = 1612

 Score = 36.6 bits (83), Expect = 0.039
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
 Frame = +2

Query: 65  PRETNRT-----RRRIYELFVAVSVSNDVCFLRASSL*NRGDISYA*VLRLQLWALTKFY 229
           PR+   T     ++R+ +LF ++  SND+  + A+SL    D   A VL+L  WA T F 
Sbjct: 545 PRKCEETTQQPPQQRVIQLFDSIGSSNDITSVSAASL-GAIDDKAALVLKLLEWAATPFR 603

Query: 230 YVILRVF------RRW 259
           Y + RV+      R+W
Sbjct: 604 YGVSRVYTGARLLRKW 619


>sp|Q4WWL0|SRB8_ASPFU Mediator of RNA polymerase II transcription
           subunit 12 OS=Aspergillus fumigatus GN=srb8 PE=3 SV=2
          Length = 1617

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
 Frame = +2

Query: 86  RRRIYELFVAVSVSNDVCFLRASSL*NRGDISYA*VLRLQLWALTKFYYVILRVF----- 250
           ++R+ +LF ++  S+D+  + A+SL    D   A VL+L  WA T F Y + RV+     
Sbjct: 557 QQRVIQLFDSICSSHDITSVSAASL-RAIDDKAALVLKLLEWAATPFRYGVSRVYTGARL 615

Query: 251 -RRW 259
            R+W
Sbjct: 616 LRKW 619


>sp|Q9FLX3|FB293_ARATH F-box protein At5g52880 OS=Arabidopsis
           thaliana GN=At5g52880 PE=2 SV=1
          Length = 269

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 300 RGWCDLSDERIWHDKVSCLPYVC 368
           RG+C   D  +WH+ + CL   C
Sbjct: 195 RGYCSYCDSIVWHENLRCLNKQC 217


>sp|Q5FLL4|DNLJ_LACAC DNA ligase OS=Lactobacillus acidophilus
           GN=ligA PE=3 SV=1
          Length = 668

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -2

Query: 167 DSIDY*HAEN----RHRLIHLRPQIARRCVDVCDSSRVE 63
           DS+ Y   EN     H+L+HL+ ++A RC++    ++VE
Sbjct: 396 DSVPYVIPENCPSCGHKLVHLQDEVALRCINPSCPAQVE 434

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916374|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A05.
         (381 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0XZ16|B0XZ16_ASPFC RNA polymerase II mediator complex compon...    34   4.1  
tr|Q4Q7X5|Q4Q7X5_LEIMA Putative uncharacterized protein OS=Leish...    33   5.3  

>tr|B0XZ16|B0XZ16_ASPFC RNA polymerase II mediator complex component
           Srb8, putative OS=Aspergillus fumigatus (strain CEA10 /
           CBS 144.89 / FGSC A1163) GN=AFUB_042820 PE=4 SV=1
          Length = 1614

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
 Frame = +2

Query: 86  RRRIYELFVAVSVSNDVCFLRASSL*NRGDISYA*VLRLQLWALTKFYYVILRVF----- 250
           ++R+ +LF ++  S+D+  + A+SL    D   A VL+L  WA T F Y + RV+     
Sbjct: 554 QQRVIQLFDSICSSHDITSVSAASL-RAIDDKAALVLKLLEWAATPFRYGVSRVYTGARL 612

Query: 251 -RRW 259
            R+W
Sbjct: 613 LRKW 616


>tr|Q4Q7X5|Q4Q7X5_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF28.2870 PE=4 SV=1
          Length = 250

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +3

Query: 192 YSDCSCGH*QNSTMSSYVFSADGFRV*KLRDRCILVRGWCDLSD 323
           Y+D  C H      S +VFSADG +V ++  R +L RG  DL+D
Sbjct: 195 YADAECSHAFFDVRSVFVFSADGAKVERI-SRELLPRGGHDLND 237