BP916379 |
Clone id |
YMU001_000087_A10 |
Library |
YMU01 |
Length |
556 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000087_A10. |
Accession |
BP916379 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTGCATAGACAGACTGCTGCTTCAGCAGTGAAGCATATGGCTCTTGGTGTTGCTGGACTT GGTTGTGAAGATGCATTGGTCCATCTTTTAAATTATGTGTGGCCGAACATATTTGAAACA TCTCCACATGTGATAAATGCAGTAACTGAGGCTATTGAGGGAATGAGAGTGGCGTTGGGT CCTGCAGTGGTTCTCAATTACTGCCTCCAGGGTTTGTTCCATCCTGCGAGAAAAGTGCGT GAGGTTTATTGGAAGATTTACAATTCTCTGTACATTGGCTCTCAAGACAGCCTTGTTGCA GCCTATCCAGTCCTAGAGGACGATGCTAACAACATATACAGCAGACCTGAGTTGGCCATG TTTGTTTAAGAAGCTTGTTGATATCAAAGGATTACAGTTAAAGAAGACTGTTCAAGAAGT TGTGGATATTTGGGTTTTTAACAGATGAGCCTCCTTCCCTCGCCTTTTTTTATGAGCTGA TTCCAAACCATTTGGCCAGTTCATCTTAGTTTCACATTGTACAAGTTAAGTGGTTGTCTA TGTGTGAACAAGCTAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O75533 |
Definition |
sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens |
Align length |
118 |
Score (bit) |
183.0 |
E-value |
4.0e-46 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0E3Z8 |
Definition |
tr|Q0E3Z8|Q0E3Z8_ORYSJ Os02g0146400 protein (Fragment) OS=Oryza sativa subsp. japonica |
Align length |
122 |
Score (bit) |
238.0 |
E-value |
1.0e-61 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916379|Adiantum capillus-veneris mRNA, clone: YMU001_000087_A10. (556 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0E3Z8|Q0E3Z8_ORYSJ Os02g0146400 protein (Fragment) OS=Oryza ... 238 1e-61 tr|Q0E3Z1|Q0E3Z1_ORYSJ Os02g0147300 protein OS=Oryza sativa subs... 238 1e-61 tr|B8AHR1|B8AHR1_ORYSI Putative uncharacterized protein OS=Oryza... 238 1e-61 tr|A3A338|A3A338_ORYSJ Putative uncharacterized protein OS=Oryza... 238 1e-61 tr|A2X0V2|A2X0V2_ORYSI Putative uncharacterized protein OS=Oryza... 238 1e-61 tr|A7PTH6|A7PTH6_VITVI Chromosome chr8 scaffold_29, whole genome... 234 2e-60 tr|Q9FMF9|Q9FMF9_ARATH Nuclear protein-like OS=Arabidopsis thali... 234 2e-60 tr|A9RIM7|A9RIM7_PHYPA Predicted protein OS=Physcomitrella paten... 231 2e-59 tr|Q56YD2|Q56YD2_ARATH Nuclear protein-like OS=Arabidopsis thali... 228 2e-58 tr|A2X4T8|A2X4T8_ORYSI Putative uncharacterized protein OS=Oryza... 226 6e-58 tr|A7S041|A7S041_NEMVE Predicted protein OS=Nematostella vectens... 204 2e-51 tr|B6N3G7|B6N3G7_BRAFL Putative uncharacterized protein OS=Branc... 196 5e-49 tr|B6L9N8|B6L9N8_BRAFL Putative uncharacterized protein OS=Branc... 196 5e-49 tr|Q01DC6|Q01DC6_OSTTA Splicing factor, putative (ISS) OS=Ostreo... 193 6e-48 tr|A4RTQ4|A4RTQ4_OSTLU Predicted protein OS=Ostreococcus lucimar... 191 3e-47 tr|B3RQX5|B3RQX5_TRIAD Splicing factor 3B subunit 1 OS=Trichopla... 188 2e-46 tr|Q17F20|Q17F20_AEDAE U2 small nuclear ribonucleoprotein, putat... 187 3e-46 tr|B0WPC8|B0WPC8_CULQU U2 small nuclear ribonucleoprotein OS=Cul... 186 7e-46 tr|Q7QEW2|Q7QEW2_ANOGA AGAP000178-PA OS=Anopheles gambiae GN=AGA... 186 1e-45 tr|Q4RAH6|Q4RAH6_TETNG Chromosome undetermined SCAF23647, whole ... 185 1e-45 tr|A9V286|A9V286_MONBE Predicted protein OS=Monosiga brevicollis... 185 2e-45 tr|B7PZV0|B7PZV0_IXOSC Splicing factor 3B subunit, putative (Fra... 184 2e-45 tr|Q8C839|Q8C839_MOUSE Putative uncharacterized protein OS=Mus m... 183 5e-45 tr|Q9NTB4|Q9NTB4_HUMAN Putative uncharacterized protein DKFZp434... 183 5e-45 tr|B8BYH0|B8BYH0_THAPS Putative uncharacterized protein OS=Thala... 183 6e-45 tr|Q9VPR5|Q9VPR5_DROME CG2807 OS=Drosophila melanogaster GN=CG28... 183 6e-45 tr|B4P2G3|B4P2G3_DROYA GE16924 OS=Drosophila yakuba GN=GE16924 P... 183 6e-45 tr|B4N0T4|B4N0T4_DROWI GK24416 OS=Drosophila willistoni GN=GK244... 183 6e-45 tr|B4ICZ1|B4ICZ1_DROSE GM16752 OS=Drosophila sechellia GN=GM1675... 183 6e-45 tr|B3N7S3|B3N7S3_DROER GG24729 OS=Drosophila erecta GN=GG24729 P... 183 6e-45
>tr|Q0E3Z8|Q0E3Z8_ORYSJ Os02g0146400 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0146400 PE=4 SV=1 Length = 358
Score = 238 bits (608), Expect = 1e-61 Identities = 114/122 (93%), Positives = 119/122 (97%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAV EAIEGMRVALG Sbjct: 237 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALG 296
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 PAV+LNYCLQGLFHPARKVREVYWKIYNSLYIG+QD+LVAAYP L+DD +NIYSRPELAM Sbjct: 297 PAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAM 356
Query: 361 FV 366 FV Sbjct: 357 FV 358
>tr|Q0E3Z1|Q0E3Z1_ORYSJ Os02g0147300 protein OS=Oryza sativa subsp. japonica GN=Os02g0147300 PE=4 SV=1 Length = 1158
Score = 238 bits (608), Expect = 1e-61 Identities = 114/122 (93%), Positives = 119/122 (97%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAV EAIEGMRVALG Sbjct: 1037 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALG 1096
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 PAV+LNYCLQGLFHPARKVREVYWKIYNSLYIG+QD+LVAAYP L+DD +NIYSRPELAM Sbjct: 1097 PAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAM 1156
Query: 361 FV 366 FV Sbjct: 1157 FV 1158
>tr|B8AHR1|B8AHR1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05843 PE=4 SV=1 Length = 522
Score = 238 bits (608), Expect = 1e-61 Identities = 114/122 (93%), Positives = 119/122 (97%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAV EAIEGMRVALG Sbjct: 401 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALG 460
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 PAV+LNYCLQGLFHPARKVREVYWKIYNSLYIG+QD+LVAAYP L+DD +NIYSRPELAM Sbjct: 461 PAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAM 520
Query: 361 FV 366 FV Sbjct: 521 FV 522
>tr|A3A338|A3A338_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_005210 PE=4 SV=1 Length = 1283
Score = 238 bits (608), Expect = 1e-61 Identities = 114/122 (93%), Positives = 119/122 (97%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAV EAIEGMRVALG Sbjct: 1162 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALG 1221
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 PAV+LNYCLQGLFHPARKVREVYWKIYNSLYIG+QD+LVAAYP L+DD +NIYSRPELAM Sbjct: 1222 PAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAM 1281
Query: 361 FV 366 FV Sbjct: 1282 FV 1283
>tr|A2X0V2|A2X0V2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05837 PE=4 SV=1 Length = 249
Score = 238 bits (608), Expect = 1e-61 Identities = 114/122 (93%), Positives = 119/122 (97%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAV EAIEGMRVALG Sbjct: 128 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMRVALG 187
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 PAV+LNYCLQGLFHPARKVREVYWKIYNSLYIG+QD+LVAAYP L+DD +NIYSRPELAM Sbjct: 188 PAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPALDDDGDNIYSRPELAM 247
Query: 361 FV 366 FV Sbjct: 248 FV 249
>tr|A7PTH6|A7PTH6_VITVI Chromosome chr8 scaffold_29, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023361001 PE=4 SV=1 Length = 522
Score = 234 bits (598), Expect = 2e-60 Identities = 112/122 (91%), Positives = 118/122 (96%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHL+NYVWPNIFETSPHVINAV EAIEGMRVALG Sbjct: 401 VHRQTAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVMEAIEGMRVALG 460
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 AVVLNYCLQGLFHPARKVREVYWKIYNSLYIG+QD+LVAAYP+LED+ NNIYSRPEL M Sbjct: 461 AAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPLLEDEQNNIYSRPELVM 520
Query: 361 FV 366 F+ Sbjct: 521 FI 522
>tr|Q9FMF9|Q9FMF9_ARATH Nuclear protein-like OS=Arabidopsis thaliana GN=At5g64270 PE=4 SV=1 Length = 1269
Score = 234 bits (597), Expect = 2e-60 Identities = 111/122 (90%), Positives = 118/122 (96%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLN++WPNIFETSPHVINAV EAIEGMRVALG Sbjct: 1148 VHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALG 1207
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 AV+LNYCLQGLFHPARKVREVYWKIYNSLYIG+QD+LVAAYPVLED+ NN+YSRPEL M Sbjct: 1208 AAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPELTM 1267
Query: 361 FV 366 FV Sbjct: 1268 FV 1269
>tr|A9RIM7|A9RIM7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_175218 PE=4 SV=1 Length = 1292
Score = 231 bits (590), Expect = 2e-59 Identities = 109/122 (89%), Positives = 116/122 (95%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDAL+HLLNY+WPNIFETSPHVINAV EAIEGMRVALG Sbjct: 1171 VHRQTAASAVKHMALGVAGLGCEDALIHLLNYLWPNIFETSPHVINAVMEAIEGMRVALG 1230
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 P ++LNYCLQGLFHPARKVREVYWKIYNSLYIG+QD LVAAYPVLED+ NIYSRPEL M Sbjct: 1231 PTILLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDGLVAAYPVLEDEGENIYSRPELKM 1290
Query: 361 FV 366 F+ Sbjct: 1291 FL 1292
>tr|Q56YD2|Q56YD2_ARATH Nuclear protein-like OS=Arabidopsis thaliana GN=At5g64270 PE=2 SV=1 Length = 296
Score = 228 bits (580), Expect = 2e-58 Identities = 109/122 (89%), Positives = 116/122 (95%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLN++WPNIFETSPHVINAV EAIEGMRVALG Sbjct: 175 VHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALG 234
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 AV+LNY LQGLFHPARKVREVYW IYNSLYIG+QD+LVAAYPVLED+ NN+YSRPEL M Sbjct: 235 AAVILNYYLQGLFHPARKVREVYWTIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPELTM 294
Query: 361 FV 366 FV Sbjct: 295 FV 296
>tr|A2X4T8|A2X4T8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07210 PE=4 SV=1 Length = 1224
Score = 226 bits (576), Expect = 6e-58 Identities = 109/121 (90%), Positives = 114/121 (94%) Frame = +1
Query: 1 VHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVALG 180 VHRQTAASAVKHMALGVAGLGCEDALVHLLN VWPNIFETSPHVINAV EAI+GMRVALG Sbjct: 1078 VHRQTAASAVKHMALGVAGLGCEDALVHLLNLVWPNIFETSPHVINAVMEAIDGMRVALG 1137
Query: 181 PAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDSLVAAYPVLEDDANNIYSRPELAM 360 AV+LNYCLQGLFHPARKVREVYWK YNSLYIG+QD+LVAAYP L+ D NNIYSRPELAM Sbjct: 1138 SAVILNYCLQGLFHPARKVREVYWKTYNSLYIGAQDALVAAYPALDIDGNNIYSRPELAM 1197
Query: 361 F 363 F Sbjct: 1198 F 1198
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