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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916380
Clone id YMU001_000087_A11
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000087_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCCACACTACAAACGCCATGATCAAGATTATTAAGTAATAATAAGAATTGGCTTGGAACA
AAAGGTTGCACATATAGAAGCACCAACATTTTCACCACAAAGATTCTTGAATCACAACCT
TTGGTTCAAGAATCCATTGAAACCCTCCCTCAACCCACAAGCACTGGCCCTAGCATCAAA
ACACGCGTACAAAATTCTCCAACCATATTTCTGTTCCCCACAACATGCAAAGAATCATTG
CACAAAGTAAACGGGCATCCAAATGAAACAAGGTGACGAGCCATGTTTACATTCTAAAAC
AATTCAATGGAAGGACCCATACTAGGCTCTTAAATGAAAGGGCTCCTTTTACAATCTGAT
TACCACAAAAAATTTCAATCATTCAATGCTTTACATGCAAAGGTCAAATGTAAGCTGCAC
ACCTTCGTTCATTAAGGCCTGTTTCACAAAGCCAATAAGATGGTTCAATTGGATGTTATG
CATGACACACAAGCTTTAACTAAGGCAGTT
■■Homology search results ■■ -
sp_hit_id Q9FQ19
Definition sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
Align length 39
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916380|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A11.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=A...    32   2.2  
sp|Q8YMW6|CINAL_ANASP CinA-like protein OS=Anabaena sp. (strain ...    32   2.2  
sp|P15393|C11B1_RAT Cytochrome P450 11B1, mitochondrial OS=Rattu...    32   2.3  
sp|Q3MBD6|CINAL_ANAVT CinA-like protein OS=Anabaena variabilis (...    31   2.9  
sp|Q61SK8|MEP1_CAEBR MOG interacting and ectopic P-granules prot...    31   2.9  
sp|P15539|C11B2_MOUSE Cytochrome P450 11B2, mitochondrial OS=Mus...    31   3.9  
sp|Q54RY6|SRFB_DICDI Serum response factor homolog B OS=Dictyost...    30   6.5  
sp|Q6CNI5|SHE1_KLULA Mitotic spindle-associated protein SHE1 OS=...    30   8.5  
sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=...    30   8.5  

>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3
           OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2
          Length = 693

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 85  NIFTTKILESQPLVQESIETLPQPTSTGPSIKTRVQNSP 201
           N+F    + S+P +  S ETLP+P S  P+ +  V+ +P
Sbjct: 422 NVFEKDYVASKPHLAVSDETLPEPASVSPTREAEVEINP 460


>sp|Q8YMW6|CINAL_ANASP CinA-like protein OS=Anabaena sp. (strain PCC
           7120) GN=alr4808 PE=3 SV=1
          Length = 424

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 115 QPLVQESIETLPQPTSTGPSIKTRVQNSPTIFLFPTTCKESLHKV 249
           Q L+ +  + LP PT T P I    + + TIF FP    E +H++
Sbjct: 117 QALIPQGADILPNPTGTAPGIIWEPRPNMTIFTFPGVPSE-MHRM 160


>sp|P15393|C11B1_RAT Cytochrome P450 11B1, mitochondrial OS=Rattus
           norvegicus GN=Cyp11b1 PE=1 SV=1
          Length = 499

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 116 NLWFKNPLKPSLNPQALALASKHAYKILQPYFCSPQHAKNHCTK*TGIQMKQGDE 280
           ++W   P +     +AL   +K A K L+P+   PQ+++N   K   I  +QG E
Sbjct: 8   DVWLARPWQCLHRTRALGTTAKVAPKTLKPFEAIPQYSRNKWLKMIQILREQGQE 62


>sp|Q3MBD6|CINAL_ANAVT CinA-like protein OS=Anabaena variabilis
           (strain ATCC 29413 / PCC 7937) GN=Ava_2078 PE=3 SV=1
          Length = 416

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 115 QPLVQESIETLPQPTSTGPSIKTRVQNSPTIFLFPTTCKESLHKV 249
           Q L+ +  + LP PT T P I    +   TIF FP    E +H++
Sbjct: 117 QALIPQGADILPNPTGTAPGIIWEPRPDMTIFTFPGVPSE-MHRM 160


>sp|Q61SK8|MEP1_CAEBR MOG interacting and ectopic P-granules protein
           1 OS=Caenorhabditis briggsae GN=mep-1 PE=3 SV=1
          Length = 851

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 5   HYKRHDQDY*VIIRIGLEQKVAHIEAPTFSPQRFLNHNLWFKNPLKPSL--NPQALALAS 178
           HYK+  +DY  I  I + ++  H+         +LN  LW + P+ PS+    QA AL  
Sbjct: 513 HYKQCKKDYIRIRNIMMPKQEDHL---------YLNRWLWERPPVDPSIIQQQQAAALQQ 563

Query: 179 KHAYKILQPYFCSPQHAK 232
               K  Q      QHA+
Sbjct: 564 AEQKKRHQQALLREQHAQ 581


>sp|P15539|C11B2_MOUSE Cytochrome P450 11B2, mitochondrial OS=Mus
           musculus GN=Cyp11b2 PE=2 SV=2
          Length = 500

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 116 NLWFKNPLKPSLNPQALALASKHAYKILQPYFCSPQHAKNHCTK*TGIQMKQGDE 280
           ++W   P +     +AL   +  A K LQP+   PQ+++N   K   I  +QG E
Sbjct: 8   DVWLARPWQCLHRTRALGTTATLAPKTLQPFEAIPQYSRNKWLKMIQILREQGQE 62


>sp|Q54RY6|SRFB_DICDI Serum response factor homolog B
           OS=Dictyostelium discoideum GN=srfB PE=3 SV=1
          Length = 467

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 34  SNNKNWLGTKGCTYRSTNIFTTKILESQPLVQESIETLPQPTSTGPSIKTRVQNSP 201
           +NN N          S NI    +    P++ + + ++P P+S+  +I     +SP
Sbjct: 375 NNNSNSSNGNNSNNNSNNILPQNLTTPSPIISQPLPSIPSPSSSSSNIGNSGYSSP 430


>sp|Q6CNI5|SHE1_KLULA Mitotic spindle-associated protein SHE1
           OS=Kluyveromyces lactis GN=SHE1 PE=3 SV=1
          Length = 331

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 76  RSTNIFTTKILESQPLVQESIETLPQPTSTGPSIKTRVQNSP 201
           R  NI +   L  Q  + ESI T  QPT+T  S+K +  N+P
Sbjct: 163 RRRNIISNTPLSRQRQLHESIPTFAQPTAT--SLKRKQMNNP 202


>sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=Homo
            sapiens GN=MXRA5 PE=2 SV=2
          Length = 2828

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 52   LGTKGCTYRSTNIFTT--KILESQPLVQESIETLPQPTSTGPSIKTRV 189
            L T+G  Y S +  TT  KI  S P VQE++    +PTS G  IK  V
Sbjct: 1284 LKTEG-PYDSLDYMTTTRKIYSSYPKVQETLPVTYKPTSDGKEIKDDV 1330
tr_hit_id A5X2L2
Definition tr|A5X2L2|A5X2L2_9MUSC Carbamoylphosphate synthetase (Fragment) OS=Chelifera sp. JKM-2006
Align length 80
Score (bit) 33.1
E-value 8.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916380|Adiantum capillus-veneris mRNA, clone:
YMU001_000087_A11.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5X2L2|A5X2L2_9MUSC Carbamoylphosphate synthetase (Fragment) ...    33   8.1  

>tr|A5X2L2|A5X2L2_9MUSC Carbamoylphosphate synthetase (Fragment)
           OS=Chelifera sp. JKM-2006 PE=4 SV=1
          Length = 1297

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = +1

Query: 22  SRLLSNNKNWLGTKGCTYRSTNIFTTKILESQPLVQESIETLPQPTSTGPSIKTRVQNSP 201
           ++ LSN     G  G +   T   T KI ES  L+   I  LP+P   G  +K +  NS 
Sbjct: 56  TQTLSNWMEMQGIPGISDIDTRALTKKIRESGSLLGRIIYDLPKP---GTDLKLQDPNSR 112

Query: 202 TIFLFPTTCKESLHKVNGHP 261
            +    +  + +++ VNG P
Sbjct: 113 NLVAACSIKQPAIYNVNGFP 132